Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02773

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02771 and OHPLBJKB_02772 are separated by 34 nucleotidesOHPLBJKB_02772 and OHPLBJKB_02773 are separated by 1 nucleotidesOHPLBJKB_02773 and OHPLBJKB_02774 are separated by 10 nucleotides OHPLBJKB_02771: OHPLBJKB_02771 - putative hydrolase YcaC, at 2,896,738 to 2,897,364 _02771 OHPLBJKB_02772: OHPLBJKB_02772 - Anaerobic dimethyl sulfoxide reductase chain C, at 2,897,399 to 2,898,262 _02772 OHPLBJKB_02773: OHPLBJKB_02773 - Anaerobic dimethyl sulfoxide reductase chain B, at 2,898,264 to 2,898,881 _02773 OHPLBJKB_02774: OHPLBJKB_02774 - Dimethyl sulfoxide reductase DmsA, at 2,898,892 to 2,901,336 _02774 Position (kb) 2898 2899Strain fitness (log2 ratio) -2 -1 0 1 2at 2897.268 kb on + strand, within OHPLBJKB_02771at 2897.394 kb on + strandat 2897.394 kb on + strandat 2897.395 kb on - strandat 2897.400 kb on + strandat 2897.400 kb on + strandat 2897.400 kb on + strandat 2897.428 kb on + strandat 2897.439 kb on + strandat 2897.440 kb on - strandat 2897.440 kb on - strandat 2897.440 kb on - strandat 2897.440 kb on - strandat 2897.525 kb on + strand, within OHPLBJKB_02772at 2897.526 kb on - strand, within OHPLBJKB_02772at 2897.595 kb on + strand, within OHPLBJKB_02772at 2897.596 kb on - strand, within OHPLBJKB_02772at 2897.596 kb on - strand, within OHPLBJKB_02772at 2897.596 kb on - strand, within OHPLBJKB_02772at 2897.632 kb on + strand, within OHPLBJKB_02772at 2897.632 kb on + strand, within OHPLBJKB_02772at 2897.633 kb on - strand, within OHPLBJKB_02772at 2897.633 kb on - strand, within OHPLBJKB_02772at 2897.697 kb on - strand, within OHPLBJKB_02772at 2897.761 kb on - strand, within OHPLBJKB_02772at 2897.824 kb on - strand, within OHPLBJKB_02772at 2897.853 kb on + strand, within OHPLBJKB_02772at 2897.854 kb on - strand, within OHPLBJKB_02772at 2898.076 kb on + strand, within OHPLBJKB_02772at 2898.076 kb on + strand, within OHPLBJKB_02772at 2898.077 kb on - strand, within OHPLBJKB_02772at 2898.077 kb on - strand, within OHPLBJKB_02772at 2898.191 kb on - strandat 2898.203 kb on + strandat 2898.353 kb on + strand, within OHPLBJKB_02773at 2898.494 kb on - strand, within OHPLBJKB_02773at 2898.515 kb on + strand, within OHPLBJKB_02773at 2898.535 kb on + strand, within OHPLBJKB_02773at 2898.536 kb on - strand, within OHPLBJKB_02773at 2898.564 kb on - strand, within OHPLBJKB_02773at 2898.626 kb on + strand, within OHPLBJKB_02773at 2898.654 kb on - strand, within OHPLBJKB_02773at 2898.656 kb on + strand, within OHPLBJKB_02773at 2898.657 kb on - strand, within OHPLBJKB_02773at 2898.697 kb on + strand, within OHPLBJKB_02773at 2898.697 kb on + strand, within OHPLBJKB_02773at 2898.698 kb on - strand, within OHPLBJKB_02773at 2898.700 kb on + strand, within OHPLBJKB_02773at 2898.758 kb on - strand, within OHPLBJKB_02773at 2898.763 kb on + strand, within OHPLBJKB_02773at 2898.764 kb on - strand, within OHPLBJKB_02773at 2898.764 kb on - strand, within OHPLBJKB_02773at 2898.893 kb on + strandat 2898.893 kb on + strandat 2898.893 kb on + strandat 2898.893 kb on + strandat 2898.894 kb on - strandat 2898.921 kb on + strandat 2898.921 kb on + strandat 2898.922 kb on - strandat 2898.922 kb on - strandat 2898.970 kb on + strandat 2898.971 kb on - strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.978 kb on + strandat 2898.979 kb on - strandat 2898.979 kb on - strandat 2898.979 kb on - strandat 2899.017 kb on - strandat 2899.230 kb on + strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.231 kb on - strand, within OHPLBJKB_02774at 2899.350 kb on + strand, within OHPLBJKB_02774at 2899.443 kb on + strand, within OHPLBJKB_02774at 2899.444 kb on - strand, within OHPLBJKB_02774at 2899.446 kb on - strand, within OHPLBJKB_02774at 2899.547 kb on + strand, within OHPLBJKB_02774at 2899.548 kb on - strand, within OHPLBJKB_02774at 2899.637 kb on + strand, within OHPLBJKB_02774at 2899.638 kb on - strand, within OHPLBJKB_02774at 2899.638 kb on - strand, within OHPLBJKB_02774at 2899.647 kb on + strand, within OHPLBJKB_02774at 2899.647 kb on + strand, within OHPLBJKB_02774at 2899.691 kb on + strand, within OHPLBJKB_02774at 2899.692 kb on - strand, within OHPLBJKB_02774at 2899.692 kb on - strand, within OHPLBJKB_02774at 2899.699 kb on - strand, within OHPLBJKB_02774at 2899.699 kb on - strand, within OHPLBJKB_02774at 2899.828 kb on - strand, within OHPLBJKB_02774

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,897,268 + OHPLBJKB_02771 0.85 +1.8
2,897,394 + +0.3
2,897,394 + +0.0
2,897,395 - +0.2
2,897,400 + -1.4
2,897,400 + -0.9
2,897,400 + +0.5
2,897,428 + +0.6
2,897,439 + -0.2
2,897,440 - +0.9
2,897,440 - +0.8
2,897,440 - -1.9
2,897,440 - -0.1
2,897,525 + OHPLBJKB_02772 0.15 +0.3
2,897,526 - OHPLBJKB_02772 0.15 -0.9
2,897,595 + OHPLBJKB_02772 0.23 +0.4
2,897,596 - OHPLBJKB_02772 0.23 +0.6
2,897,596 - OHPLBJKB_02772 0.23 -0.5
2,897,596 - OHPLBJKB_02772 0.23 +0.3
2,897,632 + OHPLBJKB_02772 0.27 -0.8
2,897,632 + OHPLBJKB_02772 0.27 +0.6
2,897,633 - OHPLBJKB_02772 0.27 -1.2
2,897,633 - OHPLBJKB_02772 0.27 +0.9
2,897,697 - OHPLBJKB_02772 0.34 -0.6
2,897,761 - OHPLBJKB_02772 0.42 +0.3
2,897,824 - OHPLBJKB_02772 0.49 +0.8
2,897,853 + OHPLBJKB_02772 0.53 +0.3
2,897,854 - OHPLBJKB_02772 0.53 +0.3
2,898,076 + OHPLBJKB_02772 0.78 +0.5
2,898,076 + OHPLBJKB_02772 0.78 -1.0
2,898,077 - OHPLBJKB_02772 0.78 -0.5
2,898,077 - OHPLBJKB_02772 0.78 +0.1
2,898,191 - -0.6
2,898,203 + +1.0
2,898,353 + OHPLBJKB_02773 0.14 -0.7
2,898,494 - OHPLBJKB_02773 0.37 +1.0
2,898,515 + OHPLBJKB_02773 0.41 +0.1
2,898,535 + OHPLBJKB_02773 0.44 -0.9
2,898,536 - OHPLBJKB_02773 0.44 -0.1
2,898,564 - OHPLBJKB_02773 0.49 -0.1
2,898,626 + OHPLBJKB_02773 0.59 -0.4
2,898,654 - OHPLBJKB_02773 0.63 -1.7
2,898,656 + OHPLBJKB_02773 0.63 -1.2
2,898,657 - OHPLBJKB_02773 0.64 +0.5
2,898,697 + OHPLBJKB_02773 0.70 -0.9
2,898,697 + OHPLBJKB_02773 0.70 +0.5
2,898,698 - OHPLBJKB_02773 0.70 -1.1
2,898,700 + OHPLBJKB_02773 0.71 +0.1
2,898,758 - OHPLBJKB_02773 0.80 -0.5
2,898,763 + OHPLBJKB_02773 0.81 +0.8
2,898,764 - OHPLBJKB_02773 0.81 -0.8
2,898,764 - OHPLBJKB_02773 0.81 -0.1
2,898,893 + +0.1
2,898,893 + +0.1
2,898,893 + +0.8
2,898,893 + +0.1
2,898,894 - -0.2
2,898,921 + -0.1
2,898,921 + +0.2
2,898,922 - -0.3
2,898,922 - +1.7
2,898,970 + -0.0
2,898,971 - -0.9
2,898,978 + +0.2
2,898,978 + +0.3
2,898,978 + +0.1
2,898,978 + -0.6
2,898,978 + +0.2
2,898,979 - +0.7
2,898,979 - -0.6
2,898,979 - +0.7
2,899,017 - -0.0
2,899,230 + OHPLBJKB_02774 0.14 +1.3
2,899,231 - OHPLBJKB_02774 0.14 -0.2
2,899,231 - OHPLBJKB_02774 0.14 -0.0
2,899,231 - OHPLBJKB_02774 0.14 -0.2
2,899,231 - OHPLBJKB_02774 0.14 -0.0
2,899,350 + OHPLBJKB_02774 0.19 -0.2
2,899,443 + OHPLBJKB_02774 0.23 -0.5
2,899,444 - OHPLBJKB_02774 0.23 +0.1
2,899,446 - OHPLBJKB_02774 0.23 +1.6
2,899,547 + OHPLBJKB_02774 0.27 +0.1
2,899,548 - OHPLBJKB_02774 0.27 -0.7
2,899,637 + OHPLBJKB_02774 0.30 -0.2
2,899,638 - OHPLBJKB_02774 0.31 -0.4
2,899,638 - OHPLBJKB_02774 0.31 +0.0
2,899,647 + OHPLBJKB_02774 0.31 +0.9
2,899,647 + OHPLBJKB_02774 0.31 -0.2
2,899,691 + OHPLBJKB_02774 0.33 -0.2
2,899,692 - OHPLBJKB_02774 0.33 -0.2
2,899,692 - OHPLBJKB_02774 0.33 -0.0
2,899,699 - OHPLBJKB_02774 0.33 -2.1
2,899,699 - OHPLBJKB_02774 0.33 +1.4
2,899,828 - OHPLBJKB_02774 0.38 -0.2

Or see this region's nucleotide sequence