Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02748

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02746 and OHPLBJKB_02747 are separated by 135 nucleotidesOHPLBJKB_02747 and OHPLBJKB_02748 overlap by 24 nucleotidesOHPLBJKB_02748 and OHPLBJKB_02749 are separated by 153 nucleotidesOHPLBJKB_02749 and OHPLBJKB_02750 overlap by 4 nucleotides OHPLBJKB_02746: OHPLBJKB_02746 - tRNA 5-carboxymethoxyuridine methyltransferase, at 2,867,979 to 2,868,764 _02746 OHPLBJKB_02747: OHPLBJKB_02747 - hypothetical protein, at 2,868,900 to 2,869,679 _02747 OHPLBJKB_02748: OHPLBJKB_02748 - hypothetical protein, at 2,869,656 to 2,870,549 _02748 OHPLBJKB_02749: OHPLBJKB_02749 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,870,703 to 2,871,449 _02749 OHPLBJKB_02750: OHPLBJKB_02750 - hypothetical protein, at 2,871,446 to 2,871,628 _02750 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -2 -1 0 1at 2868.741 kb on - strandat 2868.810 kb on - strandat 2868.810 kb on - strandat 2868.810 kb on - strandat 2868.849 kb on + strandat 2868.849 kb on + strandat 2868.850 kb on - strandat 2868.872 kb on + strandat 2868.872 kb on + strandat 2868.872 kb on + strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.873 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.875 kb on - strandat 2868.908 kb on + strandat 2868.933 kb on - strandat 2868.933 kb on - strandat 2868.966 kb on - strandat 2869.025 kb on + strand, within OHPLBJKB_02747at 2869.029 kb on - strand, within OHPLBJKB_02747at 2869.121 kb on + strand, within OHPLBJKB_02747at 2869.140 kb on + strand, within OHPLBJKB_02747at 2869.140 kb on + strand, within OHPLBJKB_02747at 2869.140 kb on + strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.141 kb on - strand, within OHPLBJKB_02747at 2869.143 kb on - strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.164 kb on + strand, within OHPLBJKB_02747at 2869.166 kb on + strand, within OHPLBJKB_02747at 2869.167 kb on - strand, within OHPLBJKB_02747at 2869.167 kb on - strand, within OHPLBJKB_02747at 2869.197 kb on - strand, within OHPLBJKB_02747at 2869.208 kb on + strand, within OHPLBJKB_02747at 2869.321 kb on + strand, within OHPLBJKB_02747at 2869.322 kb on - strand, within OHPLBJKB_02747at 2869.322 kb on - strand, within OHPLBJKB_02747at 2869.504 kb on + strand, within OHPLBJKB_02747at 2869.710 kb on - strandat 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.756 kb on + strand, within OHPLBJKB_02748at 2869.757 kb on - strand, within OHPLBJKB_02748at 2869.757 kb on - strand, within OHPLBJKB_02748at 2869.757 kb on - strand, within OHPLBJKB_02748at 2869.807 kb on + strand, within OHPLBJKB_02748at 2869.861 kb on + strand, within OHPLBJKB_02748at 2869.862 kb on - strand, within OHPLBJKB_02748at 2869.884 kb on + strand, within OHPLBJKB_02748at 2869.944 kb on + strand, within OHPLBJKB_02748at 2869.956 kb on - strand, within OHPLBJKB_02748at 2870.061 kb on - strand, within OHPLBJKB_02748at 2870.085 kb on + strand, within OHPLBJKB_02748at 2870.135 kb on + strand, within OHPLBJKB_02748at 2870.323 kb on + strand, within OHPLBJKB_02748at 2870.323 kb on + strand, within OHPLBJKB_02748at 2870.323 kb on + strand, within OHPLBJKB_02748at 2870.323 kb on + strand, within OHPLBJKB_02748at 2870.324 kb on - strand, within OHPLBJKB_02748at 2870.324 kb on - strand, within OHPLBJKB_02748at 2870.324 kb on - strand, within OHPLBJKB_02748at 2870.324 kb on - strand, within OHPLBJKB_02748at 2870.324 kb on - strand, within OHPLBJKB_02748at 2870.324 kb on - strand, within OHPLBJKB_02748at 2870.327 kb on + strand, within OHPLBJKB_02748at 2870.328 kb on - strand, within OHPLBJKB_02748at 2870.328 kb on - strand, within OHPLBJKB_02748at 2870.402 kb on + strand, within OHPLBJKB_02748at 2870.449 kb on + strand, within OHPLBJKB_02748at 2870.449 kb on + strand, within OHPLBJKB_02748at 2870.449 kb on + strand, within OHPLBJKB_02748at 2870.495 kb on + strandat 2870.495 kb on + strandat 2870.527 kb on - strandat 2870.565 kb on - strandat 2870.595 kb on + strandat 2870.595 kb on + strandat 2870.597 kb on + strandat 2870.598 kb on - strandat 2870.598 kb on - strandat 2870.598 kb on - strandat 2870.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,868,741 - +0.1
2,868,810 - +0.7
2,868,810 - +0.3
2,868,810 - -0.0
2,868,849 + +0.8
2,868,849 + -0.4
2,868,850 - -0.2
2,868,872 + +0.4
2,868,872 + -1.0
2,868,872 + -0.3
2,868,873 - +0.7
2,868,873 - -0.4
2,868,873 - +0.1
2,868,873 - -0.6
2,868,873 - -0.4
2,868,873 - +0.3
2,868,873 - -0.2
2,868,873 - +0.2
2,868,873 - +0.4
2,868,875 - -0.2
2,868,875 - -0.4
2,868,875 - -0.9
2,868,875 - -0.5
2,868,875 - -0.2
2,868,875 - -0.6
2,868,875 - +0.3
2,868,908 + +1.0
2,868,933 - +1.1
2,868,933 - -0.8
2,868,966 - +1.1
2,869,025 + OHPLBJKB_02747 0.16 -1.1
2,869,029 - OHPLBJKB_02747 0.17 -0.4
2,869,121 + OHPLBJKB_02747 0.28 -0.3
2,869,140 + OHPLBJKB_02747 0.31 -0.2
2,869,140 + OHPLBJKB_02747 0.31 -0.7
2,869,140 + OHPLBJKB_02747 0.31 -0.2
2,869,141 - OHPLBJKB_02747 0.31 -0.7
2,869,141 - OHPLBJKB_02747 0.31 +0.6
2,869,141 - OHPLBJKB_02747 0.31 +1.3
2,869,141 - OHPLBJKB_02747 0.31 -0.2
2,869,141 - OHPLBJKB_02747 0.31 -0.1
2,869,141 - OHPLBJKB_02747 0.31 -0.2
2,869,143 - OHPLBJKB_02747 0.31 -0.6
2,869,164 + OHPLBJKB_02747 0.34 -1.0
2,869,164 + OHPLBJKB_02747 0.34 +0.5
2,869,164 + OHPLBJKB_02747 0.34 -0.6
2,869,164 + OHPLBJKB_02747 0.34 +0.9
2,869,166 + OHPLBJKB_02747 0.34 -0.6
2,869,167 - OHPLBJKB_02747 0.34 -0.8
2,869,167 - OHPLBJKB_02747 0.34 +0.1
2,869,197 - OHPLBJKB_02747 0.38 -0.3
2,869,208 + OHPLBJKB_02747 0.39 -2.3
2,869,321 + OHPLBJKB_02747 0.54 +0.6
2,869,322 - OHPLBJKB_02747 0.54 +0.0
2,869,322 - OHPLBJKB_02747 0.54 -1.5
2,869,504 + OHPLBJKB_02747 0.77 +0.0
2,869,710 - -0.4
2,869,756 + OHPLBJKB_02748 0.11 -1.6
2,869,756 + OHPLBJKB_02748 0.11 -0.7
2,869,756 + OHPLBJKB_02748 0.11 +0.9
2,869,756 + OHPLBJKB_02748 0.11 -0.3
2,869,757 - OHPLBJKB_02748 0.11 +0.1
2,869,757 - OHPLBJKB_02748 0.11 -2.2
2,869,757 - OHPLBJKB_02748 0.11 -0.0
2,869,807 + OHPLBJKB_02748 0.17 +1.3
2,869,861 + OHPLBJKB_02748 0.23 +1.4
2,869,862 - OHPLBJKB_02748 0.23 -0.6
2,869,884 + OHPLBJKB_02748 0.26 -0.6
2,869,944 + OHPLBJKB_02748 0.32 -0.2
2,869,956 - OHPLBJKB_02748 0.34 +0.5
2,870,061 - OHPLBJKB_02748 0.45 +0.6
2,870,085 + OHPLBJKB_02748 0.48 +0.8
2,870,135 + OHPLBJKB_02748 0.54 -0.1
2,870,323 + OHPLBJKB_02748 0.75 +0.6
2,870,323 + OHPLBJKB_02748 0.75 -0.5
2,870,323 + OHPLBJKB_02748 0.75 +0.8
2,870,323 + OHPLBJKB_02748 0.75 -0.3
2,870,324 - OHPLBJKB_02748 0.75 +0.2
2,870,324 - OHPLBJKB_02748 0.75 -0.5
2,870,324 - OHPLBJKB_02748 0.75 -0.9
2,870,324 - OHPLBJKB_02748 0.75 -0.3
2,870,324 - OHPLBJKB_02748 0.75 -0.4
2,870,324 - OHPLBJKB_02748 0.75 -0.3
2,870,327 + OHPLBJKB_02748 0.75 +0.7
2,870,328 - OHPLBJKB_02748 0.75 +0.3
2,870,328 - OHPLBJKB_02748 0.75 +1.1
2,870,402 + OHPLBJKB_02748 0.83 -0.2
2,870,449 + OHPLBJKB_02748 0.89 -1.3
2,870,449 + OHPLBJKB_02748 0.89 +1.3
2,870,449 + OHPLBJKB_02748 0.89 -0.6
2,870,495 + +0.4
2,870,495 + -0.3
2,870,527 - -0.0
2,870,565 - -0.8
2,870,595 + -0.5
2,870,595 + -0.1
2,870,597 + -1.2
2,870,598 - -0.1
2,870,598 - +0.3
2,870,598 - -0.9
2,870,659 + -0.3

Or see this region's nucleotide sequence