Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02610

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02608 and OHPLBJKB_02609 are separated by 3 nucleotidesOHPLBJKB_02609 and OHPLBJKB_02610 are separated by 41 nucleotidesOHPLBJKB_02610 and OHPLBJKB_02611 are separated by 224 nucleotides OHPLBJKB_02608: OHPLBJKB_02608 - Cytochrome b561, at 2,719,917 to 2,720,483 _02608 OHPLBJKB_02609: OHPLBJKB_02609 - Protein YceI, at 2,720,487 to 2,721,062 _02609 OHPLBJKB_02610: OHPLBJKB_02610 - hypothetical protein, at 2,721,104 to 2,722,156 _02610 OHPLBJKB_02611: OHPLBJKB_02611 - Lipid A biosynthesis lauroyltransferase, at 2,722,381 to 2,723,301 _02611 Position (kb) 2721 2722 2723Strain fitness (log2 ratio) -2 -1 0 1 2at 2720.109 kb on - strand, within OHPLBJKB_02608at 2720.109 kb on - strand, within OHPLBJKB_02608at 2720.131 kb on + strand, within OHPLBJKB_02608at 2720.132 kb on - strand, within OHPLBJKB_02608at 2720.208 kb on + strand, within OHPLBJKB_02608at 2720.208 kb on + strand, within OHPLBJKB_02608at 2720.209 kb on - strand, within OHPLBJKB_02608at 2720.209 kb on - strand, within OHPLBJKB_02608at 2720.209 kb on - strand, within OHPLBJKB_02608at 2720.209 kb on - strand, within OHPLBJKB_02608at 2720.209 kb on - strand, within OHPLBJKB_02608at 2720.212 kb on + strand, within OHPLBJKB_02608at 2720.212 kb on + strand, within OHPLBJKB_02608at 2720.212 kb on + strand, within OHPLBJKB_02608at 2720.213 kb on - strand, within OHPLBJKB_02608at 2720.213 kb on - strand, within OHPLBJKB_02608at 2720.213 kb on - strand, within OHPLBJKB_02608at 2720.213 kb on - strand, within OHPLBJKB_02608at 2720.213 kb on - strand, within OHPLBJKB_02608at 2720.374 kb on + strand, within OHPLBJKB_02608at 2720.375 kb on - strand, within OHPLBJKB_02608at 2720.377 kb on + strand, within OHPLBJKB_02608at 2720.377 kb on + strand, within OHPLBJKB_02608at 2720.378 kb on - strand, within OHPLBJKB_02608at 2720.480 kb on - strandat 2720.622 kb on - strand, within OHPLBJKB_02609at 2720.711 kb on + strand, within OHPLBJKB_02609at 2720.712 kb on - strand, within OHPLBJKB_02609at 2720.712 kb on - strand, within OHPLBJKB_02609at 2720.732 kb on + strand, within OHPLBJKB_02609at 2720.732 kb on + strand, within OHPLBJKB_02609at 2720.733 kb on - strand, within OHPLBJKB_02609at 2720.733 kb on - strand, within OHPLBJKB_02609at 2720.847 kb on - strand, within OHPLBJKB_02609at 2720.906 kb on - strand, within OHPLBJKB_02609at 2720.936 kb on + strand, within OHPLBJKB_02609at 2720.970 kb on - strand, within OHPLBJKB_02609at 2721.002 kb on - strand, within OHPLBJKB_02609at 2721.101 kb on + strandat 2721.102 kb on - strandat 2721.102 kb on - strandat 2721.102 kb on - strandat 2721.102 kb on - strandat 2721.102 kb on - strandat 2721.102 kb on - strandat 2721.102 kb on - strandat 2721.105 kb on + strandat 2721.106 kb on - strandat 2721.136 kb on + strandat 2721.136 kb on + strandat 2721.136 kb on + strandat 2721.157 kb on + strandat 2721.157 kb on + strandat 2721.158 kb on - strandat 2721.160 kb on + strandat 2721.169 kb on + strandat 2721.170 kb on - strandat 2721.289 kb on + strand, within OHPLBJKB_02610at 2721.325 kb on + strand, within OHPLBJKB_02610at 2721.325 kb on + strand, within OHPLBJKB_02610at 2721.326 kb on - strand, within OHPLBJKB_02610at 2721.326 kb on - strand, within OHPLBJKB_02610at 2721.382 kb on + strand, within OHPLBJKB_02610at 2721.382 kb on + strand, within OHPLBJKB_02610at 2721.382 kb on + strand, within OHPLBJKB_02610at 2721.382 kb on + strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.383 kb on - strand, within OHPLBJKB_02610at 2721.425 kb on - strand, within OHPLBJKB_02610at 2721.472 kb on + strand, within OHPLBJKB_02610at 2721.472 kb on + strand, within OHPLBJKB_02610at 2721.473 kb on - strand, within OHPLBJKB_02610at 2721.488 kb on - strand, within OHPLBJKB_02610at 2721.561 kb on + strand, within OHPLBJKB_02610at 2721.561 kb on + strand, within OHPLBJKB_02610at 2721.561 kb on + strand, within OHPLBJKB_02610at 2721.562 kb on - strand, within OHPLBJKB_02610at 2721.562 kb on - strand, within OHPLBJKB_02610at 2721.562 kb on - strand, within OHPLBJKB_02610at 2721.577 kb on + strand, within OHPLBJKB_02610at 2721.583 kb on + strand, within OHPLBJKB_02610at 2721.584 kb on - strand, within OHPLBJKB_02610at 2721.632 kb on - strand, within OHPLBJKB_02610at 2721.632 kb on - strand, within OHPLBJKB_02610at 2721.676 kb on - strand, within OHPLBJKB_02610at 2721.676 kb on - strand, within OHPLBJKB_02610at 2721.681 kb on + strand, within OHPLBJKB_02610at 2721.681 kb on + strand, within OHPLBJKB_02610at 2721.682 kb on - strand, within OHPLBJKB_02610at 2721.868 kb on + strand, within OHPLBJKB_02610at 2721.879 kb on - strand, within OHPLBJKB_02610at 2721.879 kb on - strand, within OHPLBJKB_02610at 2721.887 kb on + strand, within OHPLBJKB_02610at 2721.888 kb on - strand, within OHPLBJKB_02610at 2721.981 kb on + strand, within OHPLBJKB_02610at 2721.982 kb on - strand, within OHPLBJKB_02610at 2722.020 kb on + strand, within OHPLBJKB_02610at 2722.021 kb on - strand, within OHPLBJKB_02610at 2722.021 kb on - strand, within OHPLBJKB_02610at 2722.022 kb on + strand, within OHPLBJKB_02610at 2722.022 kb on + strand, within OHPLBJKB_02610at 2722.023 kb on - strand, within OHPLBJKB_02610at 2722.042 kb on + strand, within OHPLBJKB_02610at 2722.063 kb on - strandat 2722.063 kb on - strandat 2722.146 kb on - strandat 2722.146 kb on - strandat 2722.146 kb on - strandat 2722.161 kb on + strandat 2722.161 kb on + strandat 2722.161 kb on + strandat 2722.185 kb on + strandat 2722.203 kb on + strandat 2722.205 kb on + strandat 2722.205 kb on + strandat 2722.205 kb on + strandat 2722.205 kb on + strandat 2722.206 kb on - strandat 2722.206 kb on - strandat 2722.206 kb on - strandat 2722.206 kb on - strandat 2722.206 kb on - strandat 2722.270 kb on + strandat 2722.341 kb on + strandat 2722.341 kb on + strandat 2722.345 kb on + strandat 2722.345 kb on + strandat 2722.345 kb on + strandat 2722.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,720,109 - OHPLBJKB_02608 0.34 -1.2
2,720,109 - OHPLBJKB_02608 0.34 +1.6
2,720,131 + OHPLBJKB_02608 0.38 -0.4
2,720,132 - OHPLBJKB_02608 0.38 -0.1
2,720,208 + OHPLBJKB_02608 0.51 -0.1
2,720,208 + OHPLBJKB_02608 0.51 +0.2
2,720,209 - OHPLBJKB_02608 0.51 -1.2
2,720,209 - OHPLBJKB_02608 0.51 +0.7
2,720,209 - OHPLBJKB_02608 0.51 -1.5
2,720,209 - OHPLBJKB_02608 0.51 -0.3
2,720,209 - OHPLBJKB_02608 0.51 -2.0
2,720,212 + OHPLBJKB_02608 0.52 -0.5
2,720,212 + OHPLBJKB_02608 0.52 -2.3
2,720,212 + OHPLBJKB_02608 0.52 +0.5
2,720,213 - OHPLBJKB_02608 0.52 -0.9
2,720,213 - OHPLBJKB_02608 0.52 +0.9
2,720,213 - OHPLBJKB_02608 0.52 -0.3
2,720,213 - OHPLBJKB_02608 0.52 -0.2
2,720,213 - OHPLBJKB_02608 0.52 +0.4
2,720,374 + OHPLBJKB_02608 0.81 -0.5
2,720,375 - OHPLBJKB_02608 0.81 -1.5
2,720,377 + OHPLBJKB_02608 0.81 +0.9
2,720,377 + OHPLBJKB_02608 0.81 +1.2
2,720,378 - OHPLBJKB_02608 0.81 +0.3
2,720,480 - -0.8
2,720,622 - OHPLBJKB_02609 0.23 -0.3
2,720,711 + OHPLBJKB_02609 0.39 +0.1
2,720,712 - OHPLBJKB_02609 0.39 -0.6
2,720,712 - OHPLBJKB_02609 0.39 -1.9
2,720,732 + OHPLBJKB_02609 0.43 -0.1
2,720,732 + OHPLBJKB_02609 0.43 -1.6
2,720,733 - OHPLBJKB_02609 0.43 +0.8
2,720,733 - OHPLBJKB_02609 0.43 +0.5
2,720,847 - OHPLBJKB_02609 0.62 -0.5
2,720,906 - OHPLBJKB_02609 0.73 -0.0
2,720,936 + OHPLBJKB_02609 0.78 -0.2
2,720,970 - OHPLBJKB_02609 0.84 +0.0
2,721,002 - OHPLBJKB_02609 0.89 -0.0
2,721,101 + +1.0
2,721,102 - +0.3
2,721,102 - +1.1
2,721,102 - +0.1
2,721,102 - +0.3
2,721,102 - +0.8
2,721,102 - +0.8
2,721,102 - +0.9
2,721,105 + +0.3
2,721,106 - -0.0
2,721,136 + -0.9
2,721,136 + +0.7
2,721,136 + -2.0
2,721,157 + +0.9
2,721,157 + -0.9
2,721,158 - -0.6
2,721,160 + -0.6
2,721,169 + +0.7
2,721,170 - +0.3
2,721,289 + OHPLBJKB_02610 0.18 -0.6
2,721,325 + OHPLBJKB_02610 0.21 +2.7
2,721,325 + OHPLBJKB_02610 0.21 +0.0
2,721,326 - OHPLBJKB_02610 0.21 +0.4
2,721,326 - OHPLBJKB_02610 0.21 -0.5
2,721,382 + OHPLBJKB_02610 0.26 -2.2
2,721,382 + OHPLBJKB_02610 0.26 +0.3
2,721,382 + OHPLBJKB_02610 0.26 +2.3
2,721,382 + OHPLBJKB_02610 0.26 -0.8
2,721,383 - OHPLBJKB_02610 0.26 +0.4
2,721,383 - OHPLBJKB_02610 0.26 -0.5
2,721,383 - OHPLBJKB_02610 0.26 -0.2
2,721,383 - OHPLBJKB_02610 0.26 +0.5
2,721,383 - OHPLBJKB_02610 0.26 -0.7
2,721,383 - OHPLBJKB_02610 0.26 +0.6
2,721,383 - OHPLBJKB_02610 0.26 -0.4
2,721,383 - OHPLBJKB_02610 0.26 +0.8
2,721,383 - OHPLBJKB_02610 0.26 +0.9
2,721,425 - OHPLBJKB_02610 0.30 +0.2
2,721,472 + OHPLBJKB_02610 0.35 +0.8
2,721,472 + OHPLBJKB_02610 0.35 -0.0
2,721,473 - OHPLBJKB_02610 0.35 -2.3
2,721,488 - OHPLBJKB_02610 0.36 +0.5
2,721,561 + OHPLBJKB_02610 0.43 -0.0
2,721,561 + OHPLBJKB_02610 0.43 +0.3
2,721,561 + OHPLBJKB_02610 0.43 +0.3
2,721,562 - OHPLBJKB_02610 0.43 -0.4
2,721,562 - OHPLBJKB_02610 0.43 +0.1
2,721,562 - OHPLBJKB_02610 0.43 +0.3
2,721,577 + OHPLBJKB_02610 0.45 +0.2
2,721,583 + OHPLBJKB_02610 0.45 -0.9
2,721,584 - OHPLBJKB_02610 0.46 -0.5
2,721,632 - OHPLBJKB_02610 0.50 +1.3
2,721,632 - OHPLBJKB_02610 0.50 -0.5
2,721,676 - OHPLBJKB_02610 0.54 +0.2
2,721,676 - OHPLBJKB_02610 0.54 +0.6
2,721,681 + OHPLBJKB_02610 0.55 +0.7
2,721,681 + OHPLBJKB_02610 0.55 -0.4
2,721,682 - OHPLBJKB_02610 0.55 -0.4
2,721,868 + OHPLBJKB_02610 0.73 +0.7
2,721,879 - OHPLBJKB_02610 0.74 -0.4
2,721,879 - OHPLBJKB_02610 0.74 -0.3
2,721,887 + OHPLBJKB_02610 0.74 -1.2
2,721,888 - OHPLBJKB_02610 0.74 -1.5
2,721,981 + OHPLBJKB_02610 0.83 +0.5
2,721,982 - OHPLBJKB_02610 0.83 +1.2
2,722,020 + OHPLBJKB_02610 0.87 -0.1
2,722,021 - OHPLBJKB_02610 0.87 -0.5
2,722,021 - OHPLBJKB_02610 0.87 -0.2
2,722,022 + OHPLBJKB_02610 0.87 -0.8
2,722,022 + OHPLBJKB_02610 0.87 -0.5
2,722,023 - OHPLBJKB_02610 0.87 -0.4
2,722,042 + OHPLBJKB_02610 0.89 +0.7
2,722,063 - -0.0
2,722,063 - -0.3
2,722,146 - +0.8
2,722,146 - +0.4
2,722,146 - -0.9
2,722,161 + +0.8
2,722,161 + +0.5
2,722,161 + +0.0
2,722,185 + +1.5
2,722,203 + +0.3
2,722,205 + +0.2
2,722,205 + +1.0
2,722,205 + -0.0
2,722,205 + -0.2
2,722,206 - -0.9
2,722,206 - -0.3
2,722,206 - -0.3
2,722,206 - -1.2
2,722,206 - +1.0
2,722,270 + +0.4
2,722,341 + +0.1
2,722,341 + +0.1
2,722,345 + +0.9
2,722,345 + +1.4
2,722,345 + +0.5
2,722,345 + -0.2

Or see this region's nucleotide sequence