Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02568

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02567 and OHPLBJKB_02568 overlap by 4 nucleotidesOHPLBJKB_02568 and OHPLBJKB_02569 overlap by 11 nucleotides OHPLBJKB_02567: OHPLBJKB_02567 - 'DNA polymerase III subunit delta'' transl_table=11, at 2,682,198 to 2,683,202 _02567 OHPLBJKB_02568: OHPLBJKB_02568 - Thymidylate kinase, at 2,683,199 to 2,683,840 _02568 OHPLBJKB_02569: OHPLBJKB_02569 - Endolytic murein transglycosylase, at 2,683,830 to 2,684,852 _02569 Position (kb) 2683 2684Strain fitness (log2 ratio) -1 0 1at 2682.238 kb on + strandat 2682.238 kb on + strandat 2683.902 kb on - strandat 2683.905 kb on - strandat 2683.940 kb on - strand, within OHPLBJKB_02569at 2684.033 kb on - strand, within OHPLBJKB_02569at 2684.033 kb on - strand, within OHPLBJKB_02569at 2684.042 kb on - strand, within OHPLBJKB_02569at 2684.042 kb on - strand, within OHPLBJKB_02569at 2684.042 kb on - strand, within OHPLBJKB_02569at 2684.042 kb on - strand, within OHPLBJKB_02569at 2684.087 kb on - strand, within OHPLBJKB_02569at 2684.087 kb on - strand, within OHPLBJKB_02569at 2684.087 kb on - strand, within OHPLBJKB_02569at 2684.087 kb on - strand, within OHPLBJKB_02569at 2684.135 kb on + strand, within OHPLBJKB_02569at 2684.157 kb on - strand, within OHPLBJKB_02569at 2684.157 kb on - strand, within OHPLBJKB_02569at 2684.160 kb on + strand, within OHPLBJKB_02569at 2684.211 kb on - strand, within OHPLBJKB_02569at 2684.246 kb on + strand, within OHPLBJKB_02569at 2684.246 kb on + strand, within OHPLBJKB_02569at 2684.247 kb on - strand, within OHPLBJKB_02569at 2684.247 kb on - strand, within OHPLBJKB_02569at 2684.248 kb on + strand, within OHPLBJKB_02569at 2684.248 kb on + strand, within OHPLBJKB_02569at 2684.249 kb on - strand, within OHPLBJKB_02569at 2684.350 kb on + strand, within OHPLBJKB_02569at 2684.350 kb on + strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.351 kb on - strand, within OHPLBJKB_02569at 2684.418 kb on + strand, within OHPLBJKB_02569at 2684.428 kb on + strand, within OHPLBJKB_02569at 2684.428 kb on + strand, within OHPLBJKB_02569at 2684.428 kb on + strand, within OHPLBJKB_02569at 2684.428 kb on + strand, within OHPLBJKB_02569at 2684.429 kb on - strand, within OHPLBJKB_02569at 2684.485 kb on + strand, within OHPLBJKB_02569at 2684.509 kb on - strand, within OHPLBJKB_02569at 2684.606 kb on + strand, within OHPLBJKB_02569at 2684.673 kb on - strand, within OHPLBJKB_02569at 2684.681 kb on - strand, within OHPLBJKB_02569at 2684.727 kb on - strand, within OHPLBJKB_02569at 2684.731 kb on - strand, within OHPLBJKB_02569at 2684.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,682,238 + -1.1
2,682,238 + -0.1
2,683,902 - +0.1
2,683,905 - -0.3
2,683,940 - OHPLBJKB_02569 0.11 -0.2
2,684,033 - OHPLBJKB_02569 0.20 +0.2
2,684,033 - OHPLBJKB_02569 0.20 +0.6
2,684,042 - OHPLBJKB_02569 0.21 -0.4
2,684,042 - OHPLBJKB_02569 0.21 -0.5
2,684,042 - OHPLBJKB_02569 0.21 -1.2
2,684,042 - OHPLBJKB_02569 0.21 -0.4
2,684,087 - OHPLBJKB_02569 0.25 +0.3
2,684,087 - OHPLBJKB_02569 0.25 +1.0
2,684,087 - OHPLBJKB_02569 0.25 -0.2
2,684,087 - OHPLBJKB_02569 0.25 -0.7
2,684,135 + OHPLBJKB_02569 0.30 -0.4
2,684,157 - OHPLBJKB_02569 0.32 +0.7
2,684,157 - OHPLBJKB_02569 0.32 +1.2
2,684,160 + OHPLBJKB_02569 0.32 +0.3
2,684,211 - OHPLBJKB_02569 0.37 +0.7
2,684,246 + OHPLBJKB_02569 0.41 +1.0
2,684,246 + OHPLBJKB_02569 0.41 +0.4
2,684,247 - OHPLBJKB_02569 0.41 +0.3
2,684,247 - OHPLBJKB_02569 0.41 -0.6
2,684,248 + OHPLBJKB_02569 0.41 +0.6
2,684,248 + OHPLBJKB_02569 0.41 +0.2
2,684,249 - OHPLBJKB_02569 0.41 -1.7
2,684,350 + OHPLBJKB_02569 0.51 +0.2
2,684,350 + OHPLBJKB_02569 0.51 +0.7
2,684,351 - OHPLBJKB_02569 0.51 -0.3
2,684,351 - OHPLBJKB_02569 0.51 -1.2
2,684,351 - OHPLBJKB_02569 0.51 +0.3
2,684,351 - OHPLBJKB_02569 0.51 -1.4
2,684,351 - OHPLBJKB_02569 0.51 +0.4
2,684,351 - OHPLBJKB_02569 0.51 -0.4
2,684,351 - OHPLBJKB_02569 0.51 +0.6
2,684,351 - OHPLBJKB_02569 0.51 -1.4
2,684,418 + OHPLBJKB_02569 0.57 -0.8
2,684,428 + OHPLBJKB_02569 0.58 -0.8
2,684,428 + OHPLBJKB_02569 0.58 +1.3
2,684,428 + OHPLBJKB_02569 0.58 -0.3
2,684,428 + OHPLBJKB_02569 0.58 +1.1
2,684,429 - OHPLBJKB_02569 0.59 -0.8
2,684,485 + OHPLBJKB_02569 0.64 -0.2
2,684,509 - OHPLBJKB_02569 0.66 -0.4
2,684,606 + OHPLBJKB_02569 0.76 -0.7
2,684,673 - OHPLBJKB_02569 0.82 -0.4
2,684,681 - OHPLBJKB_02569 0.83 +0.2
2,684,727 - OHPLBJKB_02569 0.88 -0.2
2,684,731 - OHPLBJKB_02569 0.88 +1.2
2,684,833 - +1.2

Or see this region's nucleotide sequence