Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02309 and OHPLBJKB_02310 are separated by 102 nucleotides OHPLBJKB_02310 and OHPLBJKB_02311 are separated by 81 nucleotides OHPLBJKB_02311 and OHPLBJKB_02312 overlap by 19 nucleotides OHPLBJKB_02312 and OHPLBJKB_02313 are separated by 100 nucleotides
OHPLBJKB_02309: OHPLBJKB_02309 - hypothetical protein, at 2,408,204 to 2,414,059
_02309
OHPLBJKB_02310: OHPLBJKB_02310 - hypothetical protein, at 2,414,162 to 2,414,308
_02310
OHPLBJKB_02311: OHPLBJKB_02311 - Carnitine operon protein CaiE, at 2,414,390 to 2,414,980
_02311
OHPLBJKB_02312: OHPLBJKB_02312 - Transcriptional repressor PaaX, at 2,414,962 to 2,415,912
_02312
OHPLBJKB_02313: OHPLBJKB_02313 - Phenylacetate-coenzyme A ligase, at 2,416,013 to 2,417,326
_02313
Position (kb)
2414
2415
2416 Strain fitness (log2 ratio)
-2
-1
0
1 at 2413.979 kb on + strand at 2414.021 kb on + strand at 2414.022 kb on - strand at 2414.022 kb on - strand at 2414.022 kb on - strand at 2414.062 kb on + strand at 2414.082 kb on - strand at 2414.245 kb on - strand, within OHPLBJKB_02310 at 2414.483 kb on - strand, within OHPLBJKB_02311 at 2414.505 kb on + strand, within OHPLBJKB_02311 at 2414.515 kb on + strand, within OHPLBJKB_02311 at 2414.516 kb on - strand, within OHPLBJKB_02311 at 2414.549 kb on - strand, within OHPLBJKB_02311 at 2414.589 kb on + strand, within OHPLBJKB_02311 at 2414.593 kb on + strand, within OHPLBJKB_02311 at 2414.594 kb on - strand, within OHPLBJKB_02311 at 2414.694 kb on - strand, within OHPLBJKB_02311 at 2414.734 kb on + strand, within OHPLBJKB_02311 at 2414.744 kb on - strand, within OHPLBJKB_02311 at 2414.744 kb on - strand, within OHPLBJKB_02311 at 2414.801 kb on - strand, within OHPLBJKB_02311 at 2414.874 kb on + strand, within OHPLBJKB_02311 at 2414.894 kb on - strand, within OHPLBJKB_02311 at 2414.963 kb on + strand at 2414.963 kb on + strand at 2414.963 kb on + strand at 2414.964 kb on - strand at 2414.964 kb on - strand at 2415.086 kb on - strand, within OHPLBJKB_02312 at 2415.110 kb on + strand, within OHPLBJKB_02312 at 2415.120 kb on + strand, within OHPLBJKB_02312 at 2415.121 kb on - strand, within OHPLBJKB_02312 at 2415.121 kb on - strand, within OHPLBJKB_02312 at 2415.121 kb on - strand, within OHPLBJKB_02312 at 2415.220 kb on + strand, within OHPLBJKB_02312 at 2415.274 kb on + strand, within OHPLBJKB_02312 at 2415.317 kb on + strand, within OHPLBJKB_02312 at 2415.317 kb on + strand, within OHPLBJKB_02312 at 2415.318 kb on - strand, within OHPLBJKB_02312 at 2415.338 kb on - strand, within OHPLBJKB_02312 at 2415.338 kb on - strand, within OHPLBJKB_02312 at 2415.355 kb on + strand, within OHPLBJKB_02312 at 2415.356 kb on - strand, within OHPLBJKB_02312 at 2415.356 kb on - strand, within OHPLBJKB_02312 at 2415.454 kb on + strand, within OHPLBJKB_02312 at 2415.454 kb on + strand, within OHPLBJKB_02312 at 2415.454 kb on + strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.455 kb on - strand, within OHPLBJKB_02312 at 2415.560 kb on - strand, within OHPLBJKB_02312 at 2415.589 kb on - strand, within OHPLBJKB_02312 at 2415.717 kb on + strand, within OHPLBJKB_02312 at 2415.717 kb on + strand, within OHPLBJKB_02312 at 2415.718 kb on - strand, within OHPLBJKB_02312 at 2415.720 kb on + strand, within OHPLBJKB_02312 at 2415.790 kb on - strand, within OHPLBJKB_02312 at 2415.790 kb on - strand, within OHPLBJKB_02312 at 2415.877 kb on + strand at 2415.877 kb on + strand at 2415.898 kb on - strand at 2415.898 kb on - strand at 2415.907 kb on - strand at 2415.930 kb on + strand at 2415.930 kb on + strand at 2415.953 kb on - strand at 2416.028 kb on - strand at 2416.088 kb on - strand at 2416.265 kb on + strand, within OHPLBJKB_02313 at 2416.464 kb on - strand, within OHPLBJKB_02313 at 2416.528 kb on - strand, within OHPLBJKB_02313 at 2416.562 kb on - strand, within OHPLBJKB_02313 at 2416.614 kb on + strand, within OHPLBJKB_02313 at 2416.618 kb on + strand, within OHPLBJKB_02313 at 2416.619 kb on - strand, within OHPLBJKB_02313 at 2416.619 kb on - strand, within OHPLBJKB_02313 at 2416.767 kb on + strand, within OHPLBJKB_02313 at 2416.767 kb on + strand, within OHPLBJKB_02313 at 2416.768 kb on - strand, within OHPLBJKB_02313 at 2416.790 kb on - strand, within OHPLBJKB_02313 at 2416.790 kb on - strand, within OHPLBJKB_02313 at 2416.790 kb on - strand, within OHPLBJKB_02313 at 2416.881 kb on + strand, within OHPLBJKB_02313
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 2,413,979 + -0.6 2,414,021 + +1.6 2,414,022 - -0.3 2,414,022 - +0.4 2,414,022 - -0.4 2,414,062 + -1.6 2,414,082 - +0.3 2,414,245 - OHPLBJKB_02310 0.56 -0.0 2,414,483 - OHPLBJKB_02311 0.16 +0.3 2,414,505 + OHPLBJKB_02311 0.19 -2.1 2,414,515 + OHPLBJKB_02311 0.21 +0.2 2,414,516 - OHPLBJKB_02311 0.21 +0.2 2,414,549 - OHPLBJKB_02311 0.27 -0.1 2,414,589 + OHPLBJKB_02311 0.34 -0.7 2,414,593 + OHPLBJKB_02311 0.34 -0.2 2,414,594 - OHPLBJKB_02311 0.35 -1.3 2,414,694 - OHPLBJKB_02311 0.51 -0.7 2,414,734 + OHPLBJKB_02311 0.58 -0.2 2,414,744 - OHPLBJKB_02311 0.60 +0.3 2,414,744 - OHPLBJKB_02311 0.60 -1.9 2,414,801 - OHPLBJKB_02311 0.70 -0.4 2,414,874 + OHPLBJKB_02311 0.82 +1.3 2,414,894 - OHPLBJKB_02311 0.85 -0.3 2,414,963 + +0.7 2,414,963 + +0.4 2,414,963 + -0.8 2,414,964 - -0.4 2,414,964 - -1.1 2,415,086 - OHPLBJKB_02312 0.13 +0.2 2,415,110 + OHPLBJKB_02312 0.16 +1.6 2,415,120 + OHPLBJKB_02312 0.17 -1.1 2,415,121 - OHPLBJKB_02312 0.17 -0.4 2,415,121 - OHPLBJKB_02312 0.17 -0.1 2,415,121 - OHPLBJKB_02312 0.17 -0.0 2,415,220 + OHPLBJKB_02312 0.27 -2.3 2,415,274 + OHPLBJKB_02312 0.33 -0.2 2,415,317 + OHPLBJKB_02312 0.37 -1.6 2,415,317 + OHPLBJKB_02312 0.37 -0.9 2,415,318 - OHPLBJKB_02312 0.37 +0.1 2,415,338 - OHPLBJKB_02312 0.40 +0.2 2,415,338 - OHPLBJKB_02312 0.40 +0.5 2,415,355 + OHPLBJKB_02312 0.41 -1.4 2,415,356 - OHPLBJKB_02312 0.41 -0.2 2,415,356 - OHPLBJKB_02312 0.41 -0.4 2,415,454 + OHPLBJKB_02312 0.52 -0.2 2,415,454 + OHPLBJKB_02312 0.52 -1.0 2,415,454 + OHPLBJKB_02312 0.52 -1.4 2,415,455 - OHPLBJKB_02312 0.52 +1.0 2,415,455 - OHPLBJKB_02312 0.52 +0.2 2,415,455 - OHPLBJKB_02312 0.52 -1.1 2,415,455 - OHPLBJKB_02312 0.52 +0.3 2,415,560 - OHPLBJKB_02312 0.63 -1.5 2,415,589 - OHPLBJKB_02312 0.66 +1.1 2,415,717 + OHPLBJKB_02312 0.79 +0.1 2,415,717 + OHPLBJKB_02312 0.79 -0.9 2,415,718 - OHPLBJKB_02312 0.79 -0.4 2,415,720 + OHPLBJKB_02312 0.80 +0.6 2,415,790 - OHPLBJKB_02312 0.87 -0.4 2,415,790 - OHPLBJKB_02312 0.87 -0.9 2,415,877 + -1.0 2,415,877 + -0.7 2,415,898 - +0.7 2,415,898 - -0.6 2,415,907 - -1.0 2,415,930 + +0.3 2,415,930 + -1.8 2,415,953 - +0.1 2,416,028 - +1.4 2,416,088 - -0.1 2,416,265 + OHPLBJKB_02313 0.19 -0.6 2,416,464 - OHPLBJKB_02313 0.34 +0.0 2,416,528 - OHPLBJKB_02313 0.39 +0.4 2,416,562 - OHPLBJKB_02313 0.42 -0.2 2,416,614 + OHPLBJKB_02313 0.46 +1.6 2,416,618 + OHPLBJKB_02313 0.46 +1.1 2,416,619 - OHPLBJKB_02313 0.46 +0.5 2,416,619 - OHPLBJKB_02313 0.46 +0.3 2,416,767 + OHPLBJKB_02313 0.57 +1.4 2,416,767 + OHPLBJKB_02313 0.57 -1.0 2,416,768 - OHPLBJKB_02313 0.57 -0.6 2,416,790 - OHPLBJKB_02313 0.59 +0.3 2,416,790 - OHPLBJKB_02313 0.59 +0.4 2,416,790 - OHPLBJKB_02313 0.59 +0.6 2,416,881 + OHPLBJKB_02313 0.66 +0.9
Or see this region's nucleotide sequence