Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02303

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02301 and OHPLBJKB_02302 are separated by 200 nucleotidesOHPLBJKB_02302 and OHPLBJKB_02303 are separated by 53 nucleotidesOHPLBJKB_02303 and OHPLBJKB_02304 overlap by 11 nucleotides OHPLBJKB_02301: OHPLBJKB_02301 - hypothetical protein, at 2,395,253 to 2,399,155 _02301 OHPLBJKB_02302: OHPLBJKB_02302 - FMN-dependent NADH-azoreductase, at 2,399,356 to 2,399,961 _02302 OHPLBJKB_02303: OHPLBJKB_02303 - putative protein YnbD, at 2,400,015 to 2,401,331 _02303 OHPLBJKB_02304: OHPLBJKB_02304 - putative protein YnbC, at 2,401,321 to 2,403,078 _02304 Position (kb) 2400 2401 2402Strain fitness (log2 ratio) -2 -1 0 1 2at 2399.203 kb on - strandat 2399.206 kb on + strandat 2399.206 kb on + strandat 2399.206 kb on + strandat 2399.206 kb on + strandat 2399.207 kb on - strandat 2399.208 kb on + strandat 2399.208 kb on + strandat 2399.208 kb on + strandat 2399.208 kb on + strandat 2399.208 kb on + strandat 2399.208 kb on + strandat 2399.208 kb on + strandat 2399.209 kb on - strandat 2399.209 kb on - strandat 2399.209 kb on - strandat 2399.209 kb on - strandat 2399.300 kb on + strandat 2399.342 kb on + strandat 2399.343 kb on - strandat 2399.343 kb on - strandat 2399.343 kb on - strandat 2399.344 kb on + strandat 2399.344 kb on + strandat 2399.344 kb on + strandat 2399.366 kb on + strandat 2399.366 kb on + strandat 2399.367 kb on - strandat 2399.367 kb on - strandat 2399.369 kb on + strandat 2399.369 kb on + strandat 2399.369 kb on + strandat 2399.369 kb on + strandat 2399.369 kb on + strandat 2399.370 kb on - strandat 2399.370 kb on - strandat 2399.370 kb on - strandat 2399.377 kb on - strandat 2399.398 kb on + strandat 2399.644 kb on + strand, within OHPLBJKB_02302at 2399.645 kb on - strand, within OHPLBJKB_02302at 2399.645 kb on - strand, within OHPLBJKB_02302at 2399.645 kb on - strand, within OHPLBJKB_02302at 2399.645 kb on - strand, within OHPLBJKB_02302at 2399.646 kb on + strand, within OHPLBJKB_02302at 2399.647 kb on - strand, within OHPLBJKB_02302at 2399.677 kb on + strand, within OHPLBJKB_02302at 2399.706 kb on + strand, within OHPLBJKB_02302at 2399.716 kb on + strand, within OHPLBJKB_02302at 2399.988 kb on - strandat 2399.988 kb on - strandat 2399.988 kb on - strandat 2399.991 kb on + strandat 2400.091 kb on + strandat 2400.091 kb on + strandat 2400.091 kb on + strandat 2400.091 kb on + strandat 2400.091 kb on + strandat 2400.092 kb on - strandat 2400.092 kb on - strandat 2400.132 kb on + strandat 2400.133 kb on - strandat 2400.133 kb on - strandat 2400.365 kb on + strand, within OHPLBJKB_02303at 2400.366 kb on - strand, within OHPLBJKB_02303at 2400.366 kb on - strand, within OHPLBJKB_02303at 2400.366 kb on - strand, within OHPLBJKB_02303at 2400.384 kb on + strand, within OHPLBJKB_02303at 2400.385 kb on - strand, within OHPLBJKB_02303at 2400.385 kb on - strand, within OHPLBJKB_02303at 2400.388 kb on + strand, within OHPLBJKB_02303at 2400.484 kb on + strand, within OHPLBJKB_02303at 2400.512 kb on + strand, within OHPLBJKB_02303at 2400.588 kb on + strand, within OHPLBJKB_02303at 2400.607 kb on - strand, within OHPLBJKB_02303at 2400.618 kb on + strand, within OHPLBJKB_02303at 2400.624 kb on + strand, within OHPLBJKB_02303at 2400.664 kb on + strand, within OHPLBJKB_02303at 2400.664 kb on + strand, within OHPLBJKB_02303at 2400.665 kb on - strand, within OHPLBJKB_02303at 2400.676 kb on - strand, within OHPLBJKB_02303at 2400.676 kb on - strand, within OHPLBJKB_02303at 2400.744 kb on + strand, within OHPLBJKB_02303at 2400.744 kb on + strand, within OHPLBJKB_02303at 2400.744 kb on + strand, within OHPLBJKB_02303at 2400.744 kb on + strand, within OHPLBJKB_02303at 2400.745 kb on - strand, within OHPLBJKB_02303at 2400.745 kb on - strand, within OHPLBJKB_02303at 2400.749 kb on + strand, within OHPLBJKB_02303at 2400.749 kb on + strand, within OHPLBJKB_02303at 2400.749 kb on + strand, within OHPLBJKB_02303at 2400.749 kb on + strand, within OHPLBJKB_02303at 2400.749 kb on + strand, within OHPLBJKB_02303at 2400.750 kb on - strand, within OHPLBJKB_02303at 2400.750 kb on - strand, within OHPLBJKB_02303at 2400.753 kb on + strand, within OHPLBJKB_02303at 2400.780 kb on - strand, within OHPLBJKB_02303at 2400.846 kb on - strand, within OHPLBJKB_02303at 2400.888 kb on + strand, within OHPLBJKB_02303at 2400.888 kb on + strand, within OHPLBJKB_02303at 2400.903 kb on - strand, within OHPLBJKB_02303at 2400.903 kb on - strand, within OHPLBJKB_02303at 2400.903 kb on - strand, within OHPLBJKB_02303at 2400.905 kb on + strand, within OHPLBJKB_02303at 2400.905 kb on + strand, within OHPLBJKB_02303at 2400.905 kb on + strand, within OHPLBJKB_02303at 2400.926 kb on + strand, within OHPLBJKB_02303at 2400.928 kb on + strand, within OHPLBJKB_02303at 2400.928 kb on + strand, within OHPLBJKB_02303at 2400.929 kb on - strand, within OHPLBJKB_02303at 2400.961 kb on - strand, within OHPLBJKB_02303at 2400.961 kb on - strand, within OHPLBJKB_02303at 2400.995 kb on + strand, within OHPLBJKB_02303at 2401.001 kb on + strand, within OHPLBJKB_02303at 2401.055 kb on + strand, within OHPLBJKB_02303at 2401.119 kb on + strand, within OHPLBJKB_02303at 2401.119 kb on + strand, within OHPLBJKB_02303at 2401.119 kb on + strand, within OHPLBJKB_02303at 2401.119 kb on + strand, within OHPLBJKB_02303at 2401.119 kb on + strand, within OHPLBJKB_02303at 2401.120 kb on - strand, within OHPLBJKB_02303at 2401.149 kb on - strand, within OHPLBJKB_02303at 2401.149 kb on - strand, within OHPLBJKB_02303at 2401.149 kb on - strand, within OHPLBJKB_02303at 2401.203 kb on - strandat 2401.242 kb on - strandat 2401.252 kb on + strandat 2401.253 kb on - strandat 2401.302 kb on + strandat 2401.308 kb on + strandat 2401.326 kb on + strandat 2401.390 kb on - strandat 2401.467 kb on + strandat 2401.477 kb on + strandat 2401.478 kb on - strandat 2401.583 kb on - strand, within OHPLBJKB_02304at 2401.610 kb on + strand, within OHPLBJKB_02304at 2401.611 kb on - strand, within OHPLBJKB_02304at 2401.611 kb on - strand, within OHPLBJKB_02304at 2401.751 kb on - strand, within OHPLBJKB_02304at 2401.814 kb on - strand, within OHPLBJKB_02304at 2401.817 kb on + strand, within OHPLBJKB_02304at 2401.818 kb on - strand, within OHPLBJKB_02304at 2401.989 kb on + strand, within OHPLBJKB_02304at 2401.990 kb on - strand, within OHPLBJKB_02304at 2401.990 kb on - strand, within OHPLBJKB_02304at 2402.015 kb on + strand, within OHPLBJKB_02304at 2402.015 kb on + strand, within OHPLBJKB_02304at 2402.016 kb on - strand, within OHPLBJKB_02304at 2402.120 kb on - strand, within OHPLBJKB_02304at 2402.231 kb on + strand, within OHPLBJKB_02304at 2402.232 kb on - strand, within OHPLBJKB_02304at 2402.232 kb on - strand, within OHPLBJKB_02304at 2402.232 kb on - strand, within OHPLBJKB_02304at 2402.233 kb on + strand, within OHPLBJKB_02304at 2402.233 kb on + strand, within OHPLBJKB_02304at 2402.244 kb on + strand, within OHPLBJKB_02304

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,399,203 - +0.2
2,399,206 + -0.3
2,399,206 + +0.3
2,399,206 + +0.8
2,399,206 + +0.3
2,399,207 - -0.2
2,399,208 + +0.4
2,399,208 + +1.7
2,399,208 + -2.3
2,399,208 + +0.9
2,399,208 + +1.0
2,399,208 + +0.4
2,399,208 + +0.7
2,399,209 - +0.2
2,399,209 - +1.1
2,399,209 - +0.1
2,399,209 - -0.3
2,399,300 + +0.0
2,399,342 + -0.1
2,399,343 - +1.0
2,399,343 - -0.2
2,399,343 - +0.2
2,399,344 + -0.7
2,399,344 + -1.3
2,399,344 + -0.3
2,399,366 + +1.9
2,399,366 + +1.3
2,399,367 - +1.0
2,399,367 - -0.5
2,399,369 + +1.4
2,399,369 + +1.5
2,399,369 + -0.2
2,399,369 + +0.1
2,399,369 + +0.8
2,399,370 - -0.0
2,399,370 - -0.0
2,399,370 - +0.7
2,399,377 - +0.0
2,399,398 + +1.4
2,399,644 + OHPLBJKB_02302 0.48 -0.2
2,399,645 - OHPLBJKB_02302 0.48 +0.3
2,399,645 - OHPLBJKB_02302 0.48 -0.8
2,399,645 - OHPLBJKB_02302 0.48 -0.5
2,399,645 - OHPLBJKB_02302 0.48 -0.7
2,399,646 + OHPLBJKB_02302 0.48 +1.1
2,399,647 - OHPLBJKB_02302 0.48 +1.1
2,399,677 + OHPLBJKB_02302 0.53 +0.3
2,399,706 + OHPLBJKB_02302 0.58 -1.4
2,399,716 + OHPLBJKB_02302 0.59 +1.2
2,399,988 - -0.4
2,399,988 - +0.1
2,399,988 - -0.2
2,399,991 + -1.0
2,400,091 + -1.7
2,400,091 + +0.7
2,400,091 + +0.0
2,400,091 + +0.5
2,400,091 + +0.0
2,400,092 - +0.6
2,400,092 - -0.7
2,400,132 + +0.6
2,400,133 - -0.2
2,400,133 - -0.2
2,400,365 + OHPLBJKB_02303 0.27 +1.9
2,400,366 - OHPLBJKB_02303 0.27 -0.7
2,400,366 - OHPLBJKB_02303 0.27 -1.3
2,400,366 - OHPLBJKB_02303 0.27 +0.3
2,400,384 + OHPLBJKB_02303 0.28 +0.4
2,400,385 - OHPLBJKB_02303 0.28 -1.0
2,400,385 - OHPLBJKB_02303 0.28 -0.1
2,400,388 + OHPLBJKB_02303 0.28 -0.4
2,400,484 + OHPLBJKB_02303 0.36 -0.8
2,400,512 + OHPLBJKB_02303 0.38 -1.4
2,400,588 + OHPLBJKB_02303 0.44 +1.3
2,400,607 - OHPLBJKB_02303 0.45 +1.0
2,400,618 + OHPLBJKB_02303 0.46 -0.6
2,400,624 + OHPLBJKB_02303 0.46 -1.3
2,400,664 + OHPLBJKB_02303 0.49 -1.0
2,400,664 + OHPLBJKB_02303 0.49 -0.7
2,400,665 - OHPLBJKB_02303 0.49 -0.3
2,400,676 - OHPLBJKB_02303 0.50 +0.6
2,400,676 - OHPLBJKB_02303 0.50 -0.0
2,400,744 + OHPLBJKB_02303 0.55 -1.0
2,400,744 + OHPLBJKB_02303 0.55 -0.4
2,400,744 + OHPLBJKB_02303 0.55 -0.2
2,400,744 + OHPLBJKB_02303 0.55 -0.6
2,400,745 - OHPLBJKB_02303 0.55 -0.2
2,400,745 - OHPLBJKB_02303 0.55 +0.6
2,400,749 + OHPLBJKB_02303 0.56 -1.3
2,400,749 + OHPLBJKB_02303 0.56 +0.1
2,400,749 + OHPLBJKB_02303 0.56 +0.4
2,400,749 + OHPLBJKB_02303 0.56 -1.3
2,400,749 + OHPLBJKB_02303 0.56 +1.0
2,400,750 - OHPLBJKB_02303 0.56 -0.3
2,400,750 - OHPLBJKB_02303 0.56 -0.5
2,400,753 + OHPLBJKB_02303 0.56 -0.6
2,400,780 - OHPLBJKB_02303 0.58 +1.0
2,400,846 - OHPLBJKB_02303 0.63 -0.6
2,400,888 + OHPLBJKB_02303 0.66 -2.3
2,400,888 + OHPLBJKB_02303 0.66 -1.9
2,400,903 - OHPLBJKB_02303 0.67 +1.3
2,400,903 - OHPLBJKB_02303 0.67 +0.6
2,400,903 - OHPLBJKB_02303 0.67 +0.1
2,400,905 + OHPLBJKB_02303 0.68 -0.5
2,400,905 + OHPLBJKB_02303 0.68 +1.1
2,400,905 + OHPLBJKB_02303 0.68 -0.9
2,400,926 + OHPLBJKB_02303 0.69 +0.5
2,400,928 + OHPLBJKB_02303 0.69 -0.9
2,400,928 + OHPLBJKB_02303 0.69 +0.3
2,400,929 - OHPLBJKB_02303 0.69 +1.1
2,400,961 - OHPLBJKB_02303 0.72 -0.4
2,400,961 - OHPLBJKB_02303 0.72 -1.7
2,400,995 + OHPLBJKB_02303 0.74 -0.2
2,401,001 + OHPLBJKB_02303 0.75 -1.6
2,401,055 + OHPLBJKB_02303 0.79 +0.2
2,401,119 + OHPLBJKB_02303 0.84 +0.8
2,401,119 + OHPLBJKB_02303 0.84 -0.7
2,401,119 + OHPLBJKB_02303 0.84 +0.4
2,401,119 + OHPLBJKB_02303 0.84 -0.8
2,401,119 + OHPLBJKB_02303 0.84 +0.4
2,401,120 - OHPLBJKB_02303 0.84 +1.2
2,401,149 - OHPLBJKB_02303 0.86 -0.1
2,401,149 - OHPLBJKB_02303 0.86 +0.1
2,401,149 - OHPLBJKB_02303 0.86 +1.9
2,401,203 - -0.7
2,401,242 - +1.7
2,401,252 + -0.0
2,401,253 - -0.7
2,401,302 + +1.1
2,401,308 + +0.2
2,401,326 + +2.1
2,401,390 - -0.9
2,401,467 + +0.6
2,401,477 + +0.7
2,401,478 - +0.4
2,401,583 - OHPLBJKB_02304 0.15 +0.8
2,401,610 + OHPLBJKB_02304 0.16 +1.4
2,401,611 - OHPLBJKB_02304 0.16 +0.1
2,401,611 - OHPLBJKB_02304 0.16 -2.3
2,401,751 - OHPLBJKB_02304 0.24 -0.3
2,401,814 - OHPLBJKB_02304 0.28 +0.1
2,401,817 + OHPLBJKB_02304 0.28 -0.9
2,401,818 - OHPLBJKB_02304 0.28 +0.6
2,401,989 + OHPLBJKB_02304 0.38 -0.2
2,401,990 - OHPLBJKB_02304 0.38 -1.3
2,401,990 - OHPLBJKB_02304 0.38 -1.0
2,402,015 + OHPLBJKB_02304 0.39 +0.9
2,402,015 + OHPLBJKB_02304 0.39 -0.0
2,402,016 - OHPLBJKB_02304 0.40 +0.6
2,402,120 - OHPLBJKB_02304 0.45 +0.2
2,402,231 + OHPLBJKB_02304 0.52 +0.8
2,402,232 - OHPLBJKB_02304 0.52 -1.4
2,402,232 - OHPLBJKB_02304 0.52 +0.1
2,402,232 - OHPLBJKB_02304 0.52 -0.8
2,402,233 + OHPLBJKB_02304 0.52 -1.1
2,402,233 + OHPLBJKB_02304 0.52 -1.2
2,402,244 + OHPLBJKB_02304 0.53 -0.0

Or see this region's nucleotide sequence