Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02132

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02131 and OHPLBJKB_02132 are separated by 134 nucleotidesOHPLBJKB_02132 and OHPLBJKB_02133 are separated by 124 nucleotidesOHPLBJKB_02133 and OHPLBJKB_02134 overlap by 48 nucleotides OHPLBJKB_02131: OHPLBJKB_02131 - Hca operon transcriptional activator HcaR, at 2,210,917 to 2,211,810 _02131 OHPLBJKB_02132: OHPLBJKB_02132 - Protein mlc, at 2,211,945 to 2,213,165 _02132 OHPLBJKB_02133: OHPLBJKB_02133 - ATP-dependent dethiobiotin synthetase BioD 1, at 2,213,290 to 2,213,985 _02133 OHPLBJKB_02134: OHPLBJKB_02134 - Voltage-gated ClC-type chloride channel ClcB, at 2,213,938 to 2,215,194 _02134 Position (kb) 2211 2212 2213 2214Strain fitness (log2 ratio) -2 -1 0 1at 2211.000 kb on + strandat 2211.087 kb on - strand, within OHPLBJKB_02131at 2211.124 kb on - strand, within OHPLBJKB_02131at 2211.124 kb on - strand, within OHPLBJKB_02131at 2211.141 kb on + strand, within OHPLBJKB_02131at 2211.142 kb on - strand, within OHPLBJKB_02131at 2211.142 kb on - strand, within OHPLBJKB_02131at 2211.213 kb on + strand, within OHPLBJKB_02131at 2211.214 kb on - strand, within OHPLBJKB_02131at 2211.250 kb on - strand, within OHPLBJKB_02131at 2211.274 kb on + strand, within OHPLBJKB_02131at 2211.290 kb on + strand, within OHPLBJKB_02131at 2211.367 kb on - strand, within OHPLBJKB_02131at 2211.468 kb on - strand, within OHPLBJKB_02131at 2211.468 kb on - strand, within OHPLBJKB_02131at 2211.563 kb on - strand, within OHPLBJKB_02131at 2211.784 kb on - strandat 2211.860 kb on + strandat 2211.861 kb on - strandat 2211.882 kb on + strandat 2211.905 kb on + strandat 2212.328 kb on + strand, within OHPLBJKB_02132at 2212.382 kb on - strand, within OHPLBJKB_02132at 2212.396 kb on + strand, within OHPLBJKB_02132at 2212.412 kb on + strand, within OHPLBJKB_02132at 2212.430 kb on + strand, within OHPLBJKB_02132at 2212.430 kb on + strand, within OHPLBJKB_02132at 2212.430 kb on + strand, within OHPLBJKB_02132at 2212.436 kb on - strand, within OHPLBJKB_02132at 2212.517 kb on + strand, within OHPLBJKB_02132at 2212.665 kb on - strand, within OHPLBJKB_02132at 2212.763 kb on + strand, within OHPLBJKB_02132at 2212.764 kb on - strand, within OHPLBJKB_02132at 2212.813 kb on + strand, within OHPLBJKB_02132at 2212.813 kb on + strand, within OHPLBJKB_02132at 2212.943 kb on + strand, within OHPLBJKB_02132at 2212.979 kb on + strand, within OHPLBJKB_02132at 2212.979 kb on + strand, within OHPLBJKB_02132at 2212.991 kb on + strand, within OHPLBJKB_02132at 2213.043 kb on + strand, within OHPLBJKB_02132at 2213.044 kb on - strandat 2213.045 kb on + strandat 2213.045 kb on + strandat 2213.045 kb on + strandat 2213.046 kb on - strandat 2213.127 kb on + strandat 2213.127 kb on + strandat 2213.128 kb on - strandat 2213.128 kb on - strandat 2213.128 kb on - strandat 2213.128 kb on - strandat 2213.128 kb on - strandat 2213.222 kb on + strandat 2213.222 kb on + strandat 2213.222 kb on + strandat 2213.223 kb on - strandat 2213.227 kb on + strandat 2213.227 kb on + strandat 2213.227 kb on + strandat 2213.361 kb on - strand, within OHPLBJKB_02133at 2213.361 kb on - strand, within OHPLBJKB_02133at 2213.401 kb on - strand, within OHPLBJKB_02133at 2213.401 kb on - strand, within OHPLBJKB_02133at 2213.401 kb on - strand, within OHPLBJKB_02133at 2213.448 kb on + strand, within OHPLBJKB_02133at 2213.449 kb on - strand, within OHPLBJKB_02133at 2213.494 kb on + strand, within OHPLBJKB_02133at 2213.495 kb on - strand, within OHPLBJKB_02133at 2213.506 kb on - strand, within OHPLBJKB_02133at 2213.511 kb on + strand, within OHPLBJKB_02133at 2213.536 kb on - strand, within OHPLBJKB_02133at 2213.621 kb on + strand, within OHPLBJKB_02133at 2213.929 kb on + strandat 2213.929 kb on + strandat 2213.930 kb on - strandat 2213.930 kb on - strandat 2213.939 kb on + strandat 2213.939 kb on + strandat 2213.940 kb on - strandat 2213.940 kb on - strandat 2213.943 kb on + strandat 2213.966 kb on + strandat 2213.970 kb on + strandat 2213.971 kb on - strandat 2213.971 kb on - strandat 2214.037 kb on + strandat 2214.038 kb on - strandat 2214.038 kb on - strandat 2214.065 kb on - strand, within OHPLBJKB_02134at 2214.082 kb on - strand, within OHPLBJKB_02134at 2214.144 kb on + strand, within OHPLBJKB_02134at 2214.144 kb on + strand, within OHPLBJKB_02134at 2214.145 kb on - strand, within OHPLBJKB_02134

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,211,000 + +0.0
2,211,087 - OHPLBJKB_02131 0.19 +0.3
2,211,124 - OHPLBJKB_02131 0.23 +0.4
2,211,124 - OHPLBJKB_02131 0.23 +1.4
2,211,141 + OHPLBJKB_02131 0.25 +0.7
2,211,142 - OHPLBJKB_02131 0.25 -1.8
2,211,142 - OHPLBJKB_02131 0.25 +0.8
2,211,213 + OHPLBJKB_02131 0.33 -1.8
2,211,214 - OHPLBJKB_02131 0.33 +0.0
2,211,250 - OHPLBJKB_02131 0.37 -0.7
2,211,274 + OHPLBJKB_02131 0.40 +0.4
2,211,290 + OHPLBJKB_02131 0.42 +0.9
2,211,367 - OHPLBJKB_02131 0.50 +0.4
2,211,468 - OHPLBJKB_02131 0.62 +0.7
2,211,468 - OHPLBJKB_02131 0.62 -0.1
2,211,563 - OHPLBJKB_02131 0.72 +0.9
2,211,784 - -0.6
2,211,860 + -0.5
2,211,861 - -0.7
2,211,882 + -0.5
2,211,905 + -1.1
2,212,328 + OHPLBJKB_02132 0.31 -1.3
2,212,382 - OHPLBJKB_02132 0.36 -0.3
2,212,396 + OHPLBJKB_02132 0.37 +0.7
2,212,412 + OHPLBJKB_02132 0.38 -0.8
2,212,430 + OHPLBJKB_02132 0.40 +0.9
2,212,430 + OHPLBJKB_02132 0.40 +0.2
2,212,430 + OHPLBJKB_02132 0.40 -0.6
2,212,436 - OHPLBJKB_02132 0.40 -1.1
2,212,517 + OHPLBJKB_02132 0.47 -0.1
2,212,665 - OHPLBJKB_02132 0.59 -1.1
2,212,763 + OHPLBJKB_02132 0.67 -1.3
2,212,764 - OHPLBJKB_02132 0.67 -0.9
2,212,813 + OHPLBJKB_02132 0.71 +0.3
2,212,813 + OHPLBJKB_02132 0.71 +1.2
2,212,943 + OHPLBJKB_02132 0.82 -0.1
2,212,979 + OHPLBJKB_02132 0.85 +0.6
2,212,979 + OHPLBJKB_02132 0.85 -0.1
2,212,991 + OHPLBJKB_02132 0.86 +0.4
2,213,043 + OHPLBJKB_02132 0.90 -2.1
2,213,044 - -0.8
2,213,045 + +0.9
2,213,045 + +1.0
2,213,045 + -1.9
2,213,046 - +1.0
2,213,127 + +0.9
2,213,127 + +0.6
2,213,128 - +0.6
2,213,128 - +0.1
2,213,128 - +0.2
2,213,128 - +0.6
2,213,128 - -0.3
2,213,222 + -0.7
2,213,222 + +0.1
2,213,222 + -0.1
2,213,223 - +0.2
2,213,227 + +1.2
2,213,227 + +0.3
2,213,227 + -1.5
2,213,361 - OHPLBJKB_02133 0.10 -0.1
2,213,361 - OHPLBJKB_02133 0.10 -0.8
2,213,401 - OHPLBJKB_02133 0.16 -0.8
2,213,401 - OHPLBJKB_02133 0.16 -1.0
2,213,401 - OHPLBJKB_02133 0.16 +0.9
2,213,448 + OHPLBJKB_02133 0.23 -0.6
2,213,449 - OHPLBJKB_02133 0.23 +0.6
2,213,494 + OHPLBJKB_02133 0.29 +0.6
2,213,495 - OHPLBJKB_02133 0.29 +0.4
2,213,506 - OHPLBJKB_02133 0.31 +0.7
2,213,511 + OHPLBJKB_02133 0.32 -0.4
2,213,536 - OHPLBJKB_02133 0.35 +0.7
2,213,621 + OHPLBJKB_02133 0.48 +0.2
2,213,929 + -0.4
2,213,929 + -1.5
2,213,930 - +1.2
2,213,930 - -0.3
2,213,939 + +0.9
2,213,939 + +0.5
2,213,940 - -0.6
2,213,940 - -1.4
2,213,943 + +0.3
2,213,966 + +1.6
2,213,970 + -0.0
2,213,971 - -0.2
2,213,971 - +0.0
2,214,037 + -0.3
2,214,038 - -1.0
2,214,038 - +1.1
2,214,065 - OHPLBJKB_02134 0.10 -0.3
2,214,082 - OHPLBJKB_02134 0.11 +0.7
2,214,144 + OHPLBJKB_02134 0.16 -1.0
2,214,144 + OHPLBJKB_02134 0.16 -1.6
2,214,145 - OHPLBJKB_02134 0.16 +0.6

Or see this region's nucleotide sequence