Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02034 and OHPLBJKB_02035 are separated by 159 nucleotides OHPLBJKB_02035 and OHPLBJKB_02036 are separated by 428 nucleotides OHPLBJKB_02036 and OHPLBJKB_02037 are separated by 388 nucleotides
OHPLBJKB_02034: OHPLBJKB_02034 - Inner membrane transport protein YdiM, at 2,108,335 to 2,109,489
_02034
OHPLBJKB_02035: OHPLBJKB_02035 - hypothetical protein, at 2,109,649 to 2,110,005
_02035
OHPLBJKB_02036: OHPLBJKB_02036 - Putative transport protein YdiK, at 2,110,434 to 2,111,546
_02036
OHPLBJKB_02037: OHPLBJKB_02037 - hypothetical protein, at 2,111,935 to 2,114,991
_02037
Position (kb)
2110
2111
2112 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2109.557 kb on - strand at 2109.677 kb on + strand at 2109.677 kb on + strand at 2109.678 kb on - strand at 2109.679 kb on + strand at 2109.679 kb on + strand at 2109.799 kb on + strand, within OHPLBJKB_02035 at 2109.799 kb on + strand, within OHPLBJKB_02035 at 2110.039 kb on - strand at 2110.040 kb on + strand at 2110.085 kb on - strand at 2110.221 kb on - strand at 2110.254 kb on - strand at 2110.259 kb on + strand at 2110.259 kb on + strand at 2110.260 kb on - strand at 2110.629 kb on + strand, within OHPLBJKB_02036 at 2110.749 kb on - strand, within OHPLBJKB_02036 at 2110.806 kb on + strand, within OHPLBJKB_02036 at 2110.829 kb on - strand, within OHPLBJKB_02036 at 2110.879 kb on - strand, within OHPLBJKB_02036 at 2111.058 kb on - strand, within OHPLBJKB_02036 at 2111.111 kb on + strand, within OHPLBJKB_02036 at 2111.113 kb on + strand, within OHPLBJKB_02036 at 2111.114 kb on - strand, within OHPLBJKB_02036 at 2111.177 kb on - strand, within OHPLBJKB_02036 at 2111.177 kb on - strand, within OHPLBJKB_02036 at 2111.177 kb on - strand, within OHPLBJKB_02036 at 2111.177 kb on - strand, within OHPLBJKB_02036 at 2111.205 kb on - strand, within OHPLBJKB_02036 at 2111.208 kb on - strand, within OHPLBJKB_02036 at 2111.256 kb on - strand, within OHPLBJKB_02036 at 2111.256 kb on - strand, within OHPLBJKB_02036 at 2111.282 kb on + strand, within OHPLBJKB_02036 at 2111.328 kb on + strand, within OHPLBJKB_02036 at 2111.329 kb on - strand, within OHPLBJKB_02036 at 2111.388 kb on + strand, within OHPLBJKB_02036 at 2111.388 kb on + strand, within OHPLBJKB_02036 at 2111.388 kb on + strand, within OHPLBJKB_02036 at 2111.388 kb on + strand, within OHPLBJKB_02036 at 2111.420 kb on + strand, within OHPLBJKB_02036 at 2111.541 kb on + strand at 2111.541 kb on + strand at 2111.547 kb on - strand at 2111.550 kb on + strand at 2111.551 kb on - strand at 2111.551 kb on - strand at 2111.614 kb on + strand at 2111.693 kb on + strand at 2111.693 kb on + strand at 2111.732 kb on + strand at 2111.732 kb on + strand at 2111.758 kb on - strand at 2111.780 kb on + strand at 2111.780 kb on + strand at 2111.788 kb on + strand at 2111.788 kb on + strand at 2111.788 kb on + strand at 2111.788 kb on + strand at 2111.788 kb on + strand at 2111.789 kb on - strand at 2111.789 kb on - strand at 2111.844 kb on - strand at 2111.844 kb on - strand at 2111.869 kb on + strand at 2111.891 kb on - strand at 2111.891 kb on - strand at 2111.895 kb on + strand at 2111.895 kb on + strand at 2111.896 kb on - strand at 2111.903 kb on + strand at 2111.904 kb on - strand at 2111.904 kb on - strand at 2111.904 kb on - strand at 2111.904 kb on - strand at 2111.931 kb on + strand at 2111.932 kb on - strand at 2111.932 kb on - strand at 2111.932 kb on - strand at 2111.932 kb on - strand at 2111.932 kb on - strand at 2111.934 kb on - strand at 2111.934 kb on - strand at 2111.934 kb on - strand at 2111.982 kb on + strand at 2111.983 kb on - strand at 2112.072 kb on + strand at 2112.073 kb on - strand at 2112.232 kb on - strand at 2112.240 kb on + strand at 2112.240 kb on + strand at 2112.240 kb on + strand at 2112.240 kb on + strand at 2112.241 kb on - strand, within OHPLBJKB_02037 at 2112.241 kb on - strand, within OHPLBJKB_02037 at 2112.334 kb on + strand, within OHPLBJKB_02037 at 2112.443 kb on - strand, within OHPLBJKB_02037 at 2112.464 kb on + strand, within OHPLBJKB_02037
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 2,109,557 - -0.6 2,109,677 + -0.3 2,109,677 + +0.4 2,109,678 - +1.8 2,109,679 + +1.1 2,109,679 + -2.2 2,109,799 + OHPLBJKB_02035 0.42 +1.2 2,109,799 + OHPLBJKB_02035 0.42 +0.2 2,110,039 - -0.1 2,110,040 + +0.4 2,110,085 - +0.2 2,110,221 - +0.5 2,110,254 - -0.0 2,110,259 + -0.8 2,110,259 + +1.3 2,110,260 - +1.1 2,110,629 + OHPLBJKB_02036 0.18 +0.6 2,110,749 - OHPLBJKB_02036 0.28 -0.3 2,110,806 + OHPLBJKB_02036 0.33 +0.2 2,110,829 - OHPLBJKB_02036 0.35 -0.5 2,110,879 - OHPLBJKB_02036 0.40 -0.6 2,111,058 - OHPLBJKB_02036 0.56 +0.3 2,111,111 + OHPLBJKB_02036 0.61 -1.6 2,111,113 + OHPLBJKB_02036 0.61 +0.7 2,111,114 - OHPLBJKB_02036 0.61 -0.7 2,111,177 - OHPLBJKB_02036 0.67 +0.9 2,111,177 - OHPLBJKB_02036 0.67 -0.6 2,111,177 - OHPLBJKB_02036 0.67 -2.0 2,111,177 - OHPLBJKB_02036 0.67 -1.1 2,111,205 - OHPLBJKB_02036 0.69 +0.0 2,111,208 - OHPLBJKB_02036 0.70 +0.7 2,111,256 - OHPLBJKB_02036 0.74 +0.3 2,111,256 - OHPLBJKB_02036 0.74 -0.3 2,111,282 + OHPLBJKB_02036 0.76 +0.3 2,111,328 + OHPLBJKB_02036 0.80 -0.1 2,111,329 - OHPLBJKB_02036 0.80 -1.9 2,111,388 + OHPLBJKB_02036 0.86 -0.4 2,111,388 + OHPLBJKB_02036 0.86 -0.3 2,111,388 + OHPLBJKB_02036 0.86 +0.2 2,111,388 + OHPLBJKB_02036 0.86 -0.6 2,111,420 + OHPLBJKB_02036 0.89 -1.2 2,111,541 + +0.6 2,111,541 + -2.6 2,111,547 - +1.3 2,111,550 + +0.3 2,111,551 - -0.5 2,111,551 - +0.5 2,111,614 + -0.5 2,111,693 + +0.3 2,111,693 + -0.3 2,111,732 + +0.3 2,111,732 + +1.0 2,111,758 - +0.6 2,111,780 + -0.4 2,111,780 + -1.3 2,111,788 + -1.8 2,111,788 + +1.1 2,111,788 + -0.7 2,111,788 + +0.2 2,111,788 + -0.0 2,111,789 - +3.6 2,111,789 - -0.0 2,111,844 - -2.1 2,111,844 - +0.3 2,111,869 + +0.2 2,111,891 - +0.7 2,111,891 - +0.3 2,111,895 + +0.8 2,111,895 + -1.1 2,111,896 - -0.1 2,111,903 + -0.0 2,111,904 - +0.1 2,111,904 - +0.5 2,111,904 - +0.4 2,111,904 - +0.8 2,111,931 + +1.0 2,111,932 - -0.4 2,111,932 - +0.2 2,111,932 - +0.3 2,111,932 - -0.0 2,111,932 - +0.3 2,111,934 - +0.3 2,111,934 - -0.3 2,111,934 - -0.8 2,111,982 + +1.2 2,111,983 - -0.7 2,112,072 + -0.7 2,112,073 - +0.6 2,112,232 - +1.1 2,112,240 + -1.2 2,112,240 + -0.7 2,112,240 + -0.0 2,112,240 + +0.2 2,112,241 - OHPLBJKB_02037 0.10 -0.4 2,112,241 - OHPLBJKB_02037 0.10 -2.3 2,112,334 + OHPLBJKB_02037 0.13 -0.3 2,112,443 - OHPLBJKB_02037 0.17 +0.5 2,112,464 + OHPLBJKB_02037 0.17 -0.6
Or see this region's nucleotide sequence