Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02036

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02034 and OHPLBJKB_02035 are separated by 159 nucleotidesOHPLBJKB_02035 and OHPLBJKB_02036 are separated by 428 nucleotidesOHPLBJKB_02036 and OHPLBJKB_02037 are separated by 388 nucleotides OHPLBJKB_02034: OHPLBJKB_02034 - Inner membrane transport protein YdiM, at 2,108,335 to 2,109,489 _02034 OHPLBJKB_02035: OHPLBJKB_02035 - hypothetical protein, at 2,109,649 to 2,110,005 _02035 OHPLBJKB_02036: OHPLBJKB_02036 - Putative transport protein YdiK, at 2,110,434 to 2,111,546 _02036 OHPLBJKB_02037: OHPLBJKB_02037 - hypothetical protein, at 2,111,935 to 2,114,991 _02037 Position (kb) 2110 2111 2112Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2109.557 kb on - strandat 2109.677 kb on + strandat 2109.677 kb on + strandat 2109.678 kb on - strandat 2109.679 kb on + strandat 2109.679 kb on + strandat 2109.799 kb on + strand, within OHPLBJKB_02035at 2109.799 kb on + strand, within OHPLBJKB_02035at 2110.039 kb on - strandat 2110.040 kb on + strandat 2110.085 kb on - strandat 2110.221 kb on - strandat 2110.254 kb on - strandat 2110.259 kb on + strandat 2110.259 kb on + strandat 2110.260 kb on - strandat 2110.629 kb on + strand, within OHPLBJKB_02036at 2110.749 kb on - strand, within OHPLBJKB_02036at 2110.806 kb on + strand, within OHPLBJKB_02036at 2110.829 kb on - strand, within OHPLBJKB_02036at 2110.879 kb on - strand, within OHPLBJKB_02036at 2111.058 kb on - strand, within OHPLBJKB_02036at 2111.111 kb on + strand, within OHPLBJKB_02036at 2111.113 kb on + strand, within OHPLBJKB_02036at 2111.114 kb on - strand, within OHPLBJKB_02036at 2111.177 kb on - strand, within OHPLBJKB_02036at 2111.177 kb on - strand, within OHPLBJKB_02036at 2111.177 kb on - strand, within OHPLBJKB_02036at 2111.177 kb on - strand, within OHPLBJKB_02036at 2111.205 kb on - strand, within OHPLBJKB_02036at 2111.208 kb on - strand, within OHPLBJKB_02036at 2111.256 kb on - strand, within OHPLBJKB_02036at 2111.256 kb on - strand, within OHPLBJKB_02036at 2111.282 kb on + strand, within OHPLBJKB_02036at 2111.328 kb on + strand, within OHPLBJKB_02036at 2111.329 kb on - strand, within OHPLBJKB_02036at 2111.388 kb on + strand, within OHPLBJKB_02036at 2111.388 kb on + strand, within OHPLBJKB_02036at 2111.388 kb on + strand, within OHPLBJKB_02036at 2111.388 kb on + strand, within OHPLBJKB_02036at 2111.420 kb on + strand, within OHPLBJKB_02036at 2111.541 kb on + strandat 2111.541 kb on + strandat 2111.547 kb on - strandat 2111.550 kb on + strandat 2111.551 kb on - strandat 2111.551 kb on - strandat 2111.614 kb on + strandat 2111.693 kb on + strandat 2111.693 kb on + strandat 2111.732 kb on + strandat 2111.732 kb on + strandat 2111.758 kb on - strandat 2111.780 kb on + strandat 2111.780 kb on + strandat 2111.788 kb on + strandat 2111.788 kb on + strandat 2111.788 kb on + strandat 2111.788 kb on + strandat 2111.788 kb on + strandat 2111.789 kb on - strandat 2111.789 kb on - strandat 2111.844 kb on - strandat 2111.844 kb on - strandat 2111.869 kb on + strandat 2111.891 kb on - strandat 2111.891 kb on - strandat 2111.895 kb on + strandat 2111.895 kb on + strandat 2111.896 kb on - strandat 2111.903 kb on + strandat 2111.904 kb on - strandat 2111.904 kb on - strandat 2111.904 kb on - strandat 2111.904 kb on - strandat 2111.931 kb on + strandat 2111.932 kb on - strandat 2111.932 kb on - strandat 2111.932 kb on - strandat 2111.932 kb on - strandat 2111.932 kb on - strandat 2111.934 kb on - strandat 2111.934 kb on - strandat 2111.934 kb on - strandat 2111.982 kb on + strandat 2111.983 kb on - strandat 2112.072 kb on + strandat 2112.073 kb on - strandat 2112.232 kb on - strandat 2112.240 kb on + strandat 2112.240 kb on + strandat 2112.240 kb on + strandat 2112.240 kb on + strandat 2112.241 kb on - strand, within OHPLBJKB_02037at 2112.241 kb on - strand, within OHPLBJKB_02037at 2112.334 kb on + strand, within OHPLBJKB_02037at 2112.443 kb on - strand, within OHPLBJKB_02037at 2112.464 kb on + strand, within OHPLBJKB_02037

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,109,557 - -0.6
2,109,677 + -0.3
2,109,677 + +0.4
2,109,678 - +1.8
2,109,679 + +1.1
2,109,679 + -2.2
2,109,799 + OHPLBJKB_02035 0.42 +1.2
2,109,799 + OHPLBJKB_02035 0.42 +0.2
2,110,039 - -0.1
2,110,040 + +0.4
2,110,085 - +0.2
2,110,221 - +0.5
2,110,254 - -0.0
2,110,259 + -0.8
2,110,259 + +1.3
2,110,260 - +1.1
2,110,629 + OHPLBJKB_02036 0.18 +0.6
2,110,749 - OHPLBJKB_02036 0.28 -0.3
2,110,806 + OHPLBJKB_02036 0.33 +0.2
2,110,829 - OHPLBJKB_02036 0.35 -0.5
2,110,879 - OHPLBJKB_02036 0.40 -0.6
2,111,058 - OHPLBJKB_02036 0.56 +0.3
2,111,111 + OHPLBJKB_02036 0.61 -1.6
2,111,113 + OHPLBJKB_02036 0.61 +0.7
2,111,114 - OHPLBJKB_02036 0.61 -0.7
2,111,177 - OHPLBJKB_02036 0.67 +0.9
2,111,177 - OHPLBJKB_02036 0.67 -0.6
2,111,177 - OHPLBJKB_02036 0.67 -2.0
2,111,177 - OHPLBJKB_02036 0.67 -1.1
2,111,205 - OHPLBJKB_02036 0.69 +0.0
2,111,208 - OHPLBJKB_02036 0.70 +0.7
2,111,256 - OHPLBJKB_02036 0.74 +0.3
2,111,256 - OHPLBJKB_02036 0.74 -0.3
2,111,282 + OHPLBJKB_02036 0.76 +0.3
2,111,328 + OHPLBJKB_02036 0.80 -0.1
2,111,329 - OHPLBJKB_02036 0.80 -1.9
2,111,388 + OHPLBJKB_02036 0.86 -0.4
2,111,388 + OHPLBJKB_02036 0.86 -0.3
2,111,388 + OHPLBJKB_02036 0.86 +0.2
2,111,388 + OHPLBJKB_02036 0.86 -0.6
2,111,420 + OHPLBJKB_02036 0.89 -1.2
2,111,541 + +0.6
2,111,541 + -2.6
2,111,547 - +1.3
2,111,550 + +0.3
2,111,551 - -0.5
2,111,551 - +0.5
2,111,614 + -0.5
2,111,693 + +0.3
2,111,693 + -0.3
2,111,732 + +0.3
2,111,732 + +1.0
2,111,758 - +0.6
2,111,780 + -0.4
2,111,780 + -1.3
2,111,788 + -1.8
2,111,788 + +1.1
2,111,788 + -0.7
2,111,788 + +0.2
2,111,788 + -0.0
2,111,789 - +3.6
2,111,789 - -0.0
2,111,844 - -2.1
2,111,844 - +0.3
2,111,869 + +0.2
2,111,891 - +0.7
2,111,891 - +0.3
2,111,895 + +0.8
2,111,895 + -1.1
2,111,896 - -0.1
2,111,903 + -0.0
2,111,904 - +0.1
2,111,904 - +0.5
2,111,904 - +0.4
2,111,904 - +0.8
2,111,931 + +1.0
2,111,932 - -0.4
2,111,932 - +0.2
2,111,932 - +0.3
2,111,932 - -0.0
2,111,932 - +0.3
2,111,934 - +0.3
2,111,934 - -0.3
2,111,934 - -0.8
2,111,982 + +1.2
2,111,983 - -0.7
2,112,072 + -0.7
2,112,073 - +0.6
2,112,232 - +1.1
2,112,240 + -1.2
2,112,240 + -0.7
2,112,240 + -0.0
2,112,240 + +0.2
2,112,241 - OHPLBJKB_02037 0.10 -0.4
2,112,241 - OHPLBJKB_02037 0.10 -2.3
2,112,334 + OHPLBJKB_02037 0.13 -0.3
2,112,443 - OHPLBJKB_02037 0.17 +0.5
2,112,464 + OHPLBJKB_02037 0.17 -0.6

Or see this region's nucleotide sequence