Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01743

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01741 and OHPLBJKB_01742 overlap by 1 nucleotidesOHPLBJKB_01742 and OHPLBJKB_01743 overlap by 41 nucleotidesOHPLBJKB_01743 and OHPLBJKB_01744 overlap by 4 nucleotides OHPLBJKB_01741: OHPLBJKB_01741 - hypothetical protein, at 1,835,439 to 1,836,029 _01741 OHPLBJKB_01742: OHPLBJKB_01742 - hypothetical protein, at 1,836,029 to 1,836,538 _01742 OHPLBJKB_01743: OHPLBJKB_01743 - hypothetical protein, at 1,836,498 to 1,836,848 _01743 OHPLBJKB_01744: OHPLBJKB_01744 - hypothetical protein, at 1,836,845 to 1,837,930 _01744 Position (kb) 1836 1837Strain fitness (log2 ratio) -2 -1 0 1at 1835.768 kb on + strand, within OHPLBJKB_01741at 1835.768 kb on + strand, within OHPLBJKB_01741at 1835.831 kb on + strand, within OHPLBJKB_01741at 1835.969 kb on + strand, within OHPLBJKB_01741at 1835.984 kb on - strandat 1836.004 kb on - strandat 1836.152 kb on + strand, within OHPLBJKB_01742at 1836.153 kb on - strand, within OHPLBJKB_01742at 1836.153 kb on - strand, within OHPLBJKB_01742at 1836.197 kb on + strand, within OHPLBJKB_01742at 1836.199 kb on + strand, within OHPLBJKB_01742at 1836.332 kb on - strand, within OHPLBJKB_01742at 1836.378 kb on + strand, within OHPLBJKB_01742at 1836.378 kb on + strand, within OHPLBJKB_01742at 1836.378 kb on + strand, within OHPLBJKB_01742at 1836.378 kb on + strand, within OHPLBJKB_01742at 1836.379 kb on - strand, within OHPLBJKB_01742at 1836.379 kb on - strand, within OHPLBJKB_01742at 1836.379 kb on - strand, within OHPLBJKB_01742at 1836.484 kb on + strand, within OHPLBJKB_01742at 1836.484 kb on + strand, within OHPLBJKB_01742at 1836.484 kb on + strand, within OHPLBJKB_01742at 1836.484 kb on + strand, within OHPLBJKB_01742at 1836.484 kb on + strand, within OHPLBJKB_01742at 1836.484 kb on + strand, within OHPLBJKB_01742at 1836.485 kb on - strand, within OHPLBJKB_01742at 1836.485 kb on - strand, within OHPLBJKB_01742at 1836.485 kb on - strand, within OHPLBJKB_01742at 1836.485 kb on - strand, within OHPLBJKB_01742at 1836.488 kb on + strandat 1836.519 kb on + strandat 1836.592 kb on + strand, within OHPLBJKB_01743at 1836.593 kb on - strand, within OHPLBJKB_01743at 1836.624 kb on + strand, within OHPLBJKB_01743at 1836.753 kb on + strand, within OHPLBJKB_01743at 1836.784 kb on + strand, within OHPLBJKB_01743at 1836.977 kb on + strand, within OHPLBJKB_01744at 1837.009 kb on - strand, within OHPLBJKB_01744at 1837.088 kb on - strand, within OHPLBJKB_01744at 1837.088 kb on - strand, within OHPLBJKB_01744at 1837.171 kb on + strand, within OHPLBJKB_01744at 1837.171 kb on + strand, within OHPLBJKB_01744at 1837.189 kb on + strand, within OHPLBJKB_01744at 1837.202 kb on - strand, within OHPLBJKB_01744at 1837.203 kb on + strand, within OHPLBJKB_01744at 1837.204 kb on - strand, within OHPLBJKB_01744at 1837.204 kb on - strand, within OHPLBJKB_01744at 1837.226 kb on + strand, within OHPLBJKB_01744at 1837.239 kb on + strand, within OHPLBJKB_01744at 1837.243 kb on + strand, within OHPLBJKB_01744at 1837.244 kb on - strand, within OHPLBJKB_01744at 1837.312 kb on - strand, within OHPLBJKB_01744at 1837.349 kb on + strand, within OHPLBJKB_01744at 1837.371 kb on + strand, within OHPLBJKB_01744at 1837.371 kb on + strand, within OHPLBJKB_01744at 1837.372 kb on - strand, within OHPLBJKB_01744at 1837.372 kb on - strand, within OHPLBJKB_01744at 1837.372 kb on - strand, within OHPLBJKB_01744at 1837.582 kb on + strand, within OHPLBJKB_01744at 1837.738 kb on - strand, within OHPLBJKB_01744at 1837.756 kb on + strand, within OHPLBJKB_01744at 1837.820 kb on + strand, within OHPLBJKB_01744at 1837.820 kb on + strand, within OHPLBJKB_01744at 1837.821 kb on - strand, within OHPLBJKB_01744at 1837.821 kb on - strand, within OHPLBJKB_01744at 1837.822 kb on + strandat 1837.822 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,835,768 + OHPLBJKB_01741 0.56 +0.4
1,835,768 + OHPLBJKB_01741 0.56 +0.9
1,835,831 + OHPLBJKB_01741 0.66 +0.5
1,835,969 + OHPLBJKB_01741 0.90 -0.3
1,835,984 - -0.3
1,836,004 - -2.3
1,836,152 + OHPLBJKB_01742 0.24 +0.7
1,836,153 - OHPLBJKB_01742 0.24 +0.8
1,836,153 - OHPLBJKB_01742 0.24 -0.2
1,836,197 + OHPLBJKB_01742 0.33 +0.1
1,836,199 + OHPLBJKB_01742 0.33 -2.0
1,836,332 - OHPLBJKB_01742 0.59 +0.3
1,836,378 + OHPLBJKB_01742 0.68 -1.3
1,836,378 + OHPLBJKB_01742 0.68 -0.7
1,836,378 + OHPLBJKB_01742 0.68 -0.3
1,836,378 + OHPLBJKB_01742 0.68 -1.1
1,836,379 - OHPLBJKB_01742 0.69 -0.3
1,836,379 - OHPLBJKB_01742 0.69 -0.4
1,836,379 - OHPLBJKB_01742 0.69 +0.3
1,836,484 + OHPLBJKB_01742 0.89 +0.0
1,836,484 + OHPLBJKB_01742 0.89 +0.0
1,836,484 + OHPLBJKB_01742 0.89 +0.1
1,836,484 + OHPLBJKB_01742 0.89 -0.3
1,836,484 + OHPLBJKB_01742 0.89 -0.2
1,836,484 + OHPLBJKB_01742 0.89 -0.4
1,836,485 - OHPLBJKB_01742 0.89 +0.1
1,836,485 - OHPLBJKB_01742 0.89 +0.7
1,836,485 - OHPLBJKB_01742 0.89 +0.1
1,836,485 - OHPLBJKB_01742 0.89 -0.1
1,836,488 + +1.1
1,836,519 + -0.1
1,836,592 + OHPLBJKB_01743 0.27 +0.7
1,836,593 - OHPLBJKB_01743 0.27 +0.4
1,836,624 + OHPLBJKB_01743 0.36 +0.3
1,836,753 + OHPLBJKB_01743 0.73 +0.7
1,836,784 + OHPLBJKB_01743 0.81 +0.5
1,836,977 + OHPLBJKB_01744 0.12 -1.6
1,837,009 - OHPLBJKB_01744 0.15 -0.6
1,837,088 - OHPLBJKB_01744 0.22 +0.4
1,837,088 - OHPLBJKB_01744 0.22 -0.7
1,837,171 + OHPLBJKB_01744 0.30 +0.3
1,837,171 + OHPLBJKB_01744 0.30 +0.8
1,837,189 + OHPLBJKB_01744 0.32 +0.8
1,837,202 - OHPLBJKB_01744 0.33 -0.0
1,837,203 + OHPLBJKB_01744 0.33 -1.0
1,837,204 - OHPLBJKB_01744 0.33 -1.0
1,837,204 - OHPLBJKB_01744 0.33 -0.2
1,837,226 + OHPLBJKB_01744 0.35 -0.1
1,837,239 + OHPLBJKB_01744 0.36 +0.4
1,837,243 + OHPLBJKB_01744 0.37 +0.5
1,837,244 - OHPLBJKB_01744 0.37 -0.0
1,837,312 - OHPLBJKB_01744 0.43 +0.0
1,837,349 + OHPLBJKB_01744 0.46 -0.5
1,837,371 + OHPLBJKB_01744 0.48 +0.7
1,837,371 + OHPLBJKB_01744 0.48 +0.6
1,837,372 - OHPLBJKB_01744 0.49 +0.7
1,837,372 - OHPLBJKB_01744 0.49 -0.0
1,837,372 - OHPLBJKB_01744 0.49 +0.3
1,837,582 + OHPLBJKB_01744 0.68 -0.1
1,837,738 - OHPLBJKB_01744 0.82 +0.4
1,837,756 + OHPLBJKB_01744 0.84 -0.6
1,837,820 + OHPLBJKB_01744 0.90 -0.1
1,837,820 + OHPLBJKB_01744 0.90 +0.3
1,837,821 - OHPLBJKB_01744 0.90 -0.8
1,837,821 - OHPLBJKB_01744 0.90 -0.8
1,837,822 + -0.1
1,837,822 + +0.8

Or see this region's nucleotide sequence