Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00542

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00540 and OHPLBJKB_00541 are separated by 80 nucleotidesOHPLBJKB_00541 and OHPLBJKB_00542 are separated by 8 nucleotidesOHPLBJKB_00542 and OHPLBJKB_00543 are separated by 208 nucleotidesOHPLBJKB_00543 and OHPLBJKB_00544 overlap by 7 nucleotides OHPLBJKB_00540: OHPLBJKB_00540 - hypothetical protein, at 555,520 to 556,527 _00540 OHPLBJKB_00541: OHPLBJKB_00541 - hypothetical protein, at 556,608 to 557,486 _00541 OHPLBJKB_00542: OHPLBJKB_00542 - putative protease YhbU, at 557,495 to 558,490 _00542 OHPLBJKB_00543: OHPLBJKB_00543 - hypothetical protein, at 558,699 to 559,223 _00543 OHPLBJKB_00544: OHPLBJKB_00544 - hypothetical protein, at 559,217 to 559,720 _00544 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 556.518 kb on + strandat 556.557 kb on + strandat 556.560 kb on + strandat 556.561 kb on - strandat 556.576 kb on - strandat 556.580 kb on - strandat 556.601 kb on + strandat 556.601 kb on + strandat 556.645 kb on + strandat 556.652 kb on + strandat 556.804 kb on + strand, within OHPLBJKB_00541at 556.804 kb on + strand, within OHPLBJKB_00541at 556.805 kb on - strand, within OHPLBJKB_00541at 556.839 kb on + strand, within OHPLBJKB_00541at 556.892 kb on + strand, within OHPLBJKB_00541at 556.892 kb on + strand, within OHPLBJKB_00541at 556.893 kb on - strand, within OHPLBJKB_00541at 557.036 kb on + strand, within OHPLBJKB_00541at 557.078 kb on + strand, within OHPLBJKB_00541at 557.079 kb on - strand, within OHPLBJKB_00541at 557.109 kb on + strand, within OHPLBJKB_00541at 557.109 kb on + strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.183 kb on + strand, within OHPLBJKB_00541at 557.183 kb on + strand, within OHPLBJKB_00541at 557.236 kb on + strand, within OHPLBJKB_00541at 557.236 kb on + strand, within OHPLBJKB_00541at 557.389 kb on + strand, within OHPLBJKB_00541at 557.389 kb on + strand, within OHPLBJKB_00541at 557.390 kb on - strand, within OHPLBJKB_00541at 557.480 kb on - strandat 557.480 kb on - strandat 557.605 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.653 kb on - strand, within OHPLBJKB_00542at 557.653 kb on - strand, within OHPLBJKB_00542at 557.653 kb on - strand, within OHPLBJKB_00542at 557.708 kb on + strand, within OHPLBJKB_00542at 557.708 kb on + strand, within OHPLBJKB_00542at 557.708 kb on + strand, within OHPLBJKB_00542at 557.763 kb on + strand, within OHPLBJKB_00542at 557.950 kb on - strand, within OHPLBJKB_00542at 557.980 kb on + strand, within OHPLBJKB_00542at 557.981 kb on - strand, within OHPLBJKB_00542at 557.981 kb on - strand, within OHPLBJKB_00542at 558.017 kb on + strand, within OHPLBJKB_00542at 558.018 kb on - strand, within OHPLBJKB_00542at 558.105 kb on + strand, within OHPLBJKB_00542at 558.106 kb on - strand, within OHPLBJKB_00542at 558.106 kb on - strand, within OHPLBJKB_00542at 558.271 kb on - strand, within OHPLBJKB_00542at 558.398 kb on - strandat 558.408 kb on - strandat 558.416 kb on - strandat 558.417 kb on + strandat 558.417 kb on + strandat 558.417 kb on + strandat 558.418 kb on - strandat 558.418 kb on - strandat 558.548 kb on - strandat 558.548 kb on - strandat 558.548 kb on - strandat 558.577 kb on + strandat 558.578 kb on - strandat 558.594 kb on + strandat 558.595 kb on - strandat 558.604 kb on - strandat 558.633 kb on + strandat 558.634 kb on - strandat 558.634 kb on - strandat 558.634 kb on - strandat 558.641 kb on + strandat 558.641 kb on + strandat 558.641 kb on + strandat 558.642 kb on - strandat 558.642 kb on - strandat 558.668 kb on - strandat 558.668 kb on - strandat 558.755 kb on - strand, within OHPLBJKB_00543at 558.808 kb on + strand, within OHPLBJKB_00543at 558.809 kb on - strand, within OHPLBJKB_00543at 558.871 kb on + strand, within OHPLBJKB_00543at 558.872 kb on - strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.875 kb on + strand, within OHPLBJKB_00543at 558.876 kb on - strand, within OHPLBJKB_00543at 558.876 kb on - strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 558.908 kb on + strand, within OHPLBJKB_00543at 559.007 kb on + strand, within OHPLBJKB_00543at 559.077 kb on + strand, within OHPLBJKB_00543at 559.077 kb on + strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.078 kb on - strand, within OHPLBJKB_00543at 559.207 kb on + strandat 559.221 kb on + strandat 559.221 kb on + strandat 559.221 kb on + strandat 559.222 kb on - strandat 559.393 kb on + strand, within OHPLBJKB_00544at 559.393 kb on + strand, within OHPLBJKB_00544at 559.393 kb on + strand, within OHPLBJKB_00544at 559.394 kb on - strand, within OHPLBJKB_00544at 559.394 kb on - strand, within OHPLBJKB_00544at 559.463 kb on + strand, within OHPLBJKB_00544

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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556,518 + -1.1
556,557 + +0.3
556,560 + -0.1
556,561 - +0.8
556,576 - -0.0
556,580 - -0.3
556,601 + +0.3
556,601 + -0.1
556,645 + +0.7
556,652 + +0.6
556,804 + OHPLBJKB_00541 0.22 -0.6
556,804 + OHPLBJKB_00541 0.22 +0.9
556,805 - OHPLBJKB_00541 0.22 +0.0
556,839 + OHPLBJKB_00541 0.26 +0.3
556,892 + OHPLBJKB_00541 0.32 +0.4
556,892 + OHPLBJKB_00541 0.32 +0.9
556,893 - OHPLBJKB_00541 0.32 -0.0
557,036 + OHPLBJKB_00541 0.49 -0.1
557,078 + OHPLBJKB_00541 0.53 -0.4
557,079 - OHPLBJKB_00541 0.54 +0.1
557,109 + OHPLBJKB_00541 0.57 -0.9
557,109 + OHPLBJKB_00541 0.57 -0.7
557,132 - OHPLBJKB_00541 0.60 +1.3
557,132 - OHPLBJKB_00541 0.60 +0.4
557,132 - OHPLBJKB_00541 0.60 +1.0
557,183 + OHPLBJKB_00541 0.65 -0.4
557,183 + OHPLBJKB_00541 0.65 -0.6
557,236 + OHPLBJKB_00541 0.71 +0.6
557,236 + OHPLBJKB_00541 0.71 +0.4
557,389 + OHPLBJKB_00541 0.89 -0.0
557,389 + OHPLBJKB_00541 0.89 -0.0
557,390 - OHPLBJKB_00541 0.89 +0.6
557,480 - +0.9
557,480 - +0.6
557,605 + OHPLBJKB_00542 0.11 -0.7
557,652 + OHPLBJKB_00542 0.16 +0.4
557,652 + OHPLBJKB_00542 0.16 -0.1
557,652 + OHPLBJKB_00542 0.16 -0.8
557,652 + OHPLBJKB_00542 0.16 -0.2
557,653 - OHPLBJKB_00542 0.16 -0.1
557,653 - OHPLBJKB_00542 0.16 +0.0
557,653 - OHPLBJKB_00542 0.16 +0.9
557,708 + OHPLBJKB_00542 0.21 +0.1
557,708 + OHPLBJKB_00542 0.21 -0.2
557,708 + OHPLBJKB_00542 0.21 -0.4
557,763 + OHPLBJKB_00542 0.27 -0.7
557,950 - OHPLBJKB_00542 0.46 -0.4
557,980 + OHPLBJKB_00542 0.49 +0.2
557,981 - OHPLBJKB_00542 0.49 +0.1
557,981 - OHPLBJKB_00542 0.49 -0.5
558,017 + OHPLBJKB_00542 0.52 -0.4
558,018 - OHPLBJKB_00542 0.53 -1.4
558,105 + OHPLBJKB_00542 0.61 +2.5
558,106 - OHPLBJKB_00542 0.61 +0.1
558,106 - OHPLBJKB_00542 0.61 -0.2
558,271 - OHPLBJKB_00542 0.78 -0.1
558,398 - +0.3
558,408 - -0.7
558,416 - -0.3
558,417 + -0.9
558,417 + +0.2
558,417 + -0.4
558,418 - +1.0
558,418 - +0.6
558,548 - -0.2
558,548 - -0.0
558,548 - +0.5
558,577 + +0.4
558,578 - -1.1
558,594 + -0.9
558,595 - -1.0
558,604 - -0.5
558,633 + -0.5
558,634 - +0.2
558,634 - +0.4
558,634 - -1.0
558,641 + -0.8
558,641 + -1.2
558,641 + -1.1
558,642 - +0.3
558,642 - +0.3
558,668 - +0.6
558,668 - +0.4
558,755 - OHPLBJKB_00543 0.11 +0.3
558,808 + OHPLBJKB_00543 0.21 -0.4
558,809 - OHPLBJKB_00543 0.21 -0.6
558,871 + OHPLBJKB_00543 0.33 +0.7
558,872 - OHPLBJKB_00543 0.33 -0.4
558,875 + OHPLBJKB_00543 0.34 +0.4
558,875 + OHPLBJKB_00543 0.34 -0.1
558,875 + OHPLBJKB_00543 0.34 +1.0
558,875 + OHPLBJKB_00543 0.34 -1.6
558,876 - OHPLBJKB_00543 0.34 -0.7
558,876 - OHPLBJKB_00543 0.34 -0.1
558,908 + OHPLBJKB_00543 0.40 +1.6
558,908 + OHPLBJKB_00543 0.40 +1.7
558,908 + OHPLBJKB_00543 0.40 +0.1
558,908 + OHPLBJKB_00543 0.40 -0.4
558,908 + OHPLBJKB_00543 0.40 +0.2
559,007 + OHPLBJKB_00543 0.59 -0.2
559,077 + OHPLBJKB_00543 0.72 -0.3
559,077 + OHPLBJKB_00543 0.72 -0.1
559,078 - OHPLBJKB_00543 0.72 -1.4
559,078 - OHPLBJKB_00543 0.72 +0.1
559,078 - OHPLBJKB_00543 0.72 +1.1
559,078 - OHPLBJKB_00543 0.72 +0.4
559,078 - OHPLBJKB_00543 0.72 +0.7
559,078 - OHPLBJKB_00543 0.72 +0.6
559,207 + +0.1
559,221 + -2.6
559,221 + -0.4
559,221 + -0.2
559,222 - -0.9
559,393 + OHPLBJKB_00544 0.35 -0.2
559,393 + OHPLBJKB_00544 0.35 +1.1
559,393 + OHPLBJKB_00544 0.35 -0.1
559,394 - OHPLBJKB_00544 0.35 +0.1
559,394 - OHPLBJKB_00544 0.35 +1.0
559,463 + OHPLBJKB_00544 0.49 +0.1

Or see this region's nucleotide sequence