Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00538

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00537 and OHPLBJKB_00538 are separated by 179 nucleotidesOHPLBJKB_00538 and OHPLBJKB_00539 are separated by 153 nucleotides OHPLBJKB_00537: OHPLBJKB_00537 - Lipoprotein NlpI, at 551,051 to 551,935 _00537 OHPLBJKB_00538: OHPLBJKB_00538 - ATP-dependent RNA helicase DeaD, at 552,115 to 554,004 _00538 OHPLBJKB_00539: OHPLBJKB_00539 - Tryptophan-specific transport protein, at 554,158 to 555,402 _00539 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 551.125 kb on + strandat 551.163 kb on + strand, within OHPLBJKB_00537at 551.164 kb on - strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.244 kb on + strand, within OHPLBJKB_00537at 551.244 kb on + strand, within OHPLBJKB_00537at 551.245 kb on - strand, within OHPLBJKB_00537at 551.245 kb on - strand, within OHPLBJKB_00537at 551.246 kb on + strand, within OHPLBJKB_00537at 551.246 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.343 kb on + strand, within OHPLBJKB_00537at 551.351 kb on + strand, within OHPLBJKB_00537at 551.361 kb on + strand, within OHPLBJKB_00537at 551.361 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.367 kb on + strand, within OHPLBJKB_00537at 551.396 kb on + strand, within OHPLBJKB_00537at 551.435 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.469 kb on + strand, within OHPLBJKB_00537at 551.469 kb on + strand, within OHPLBJKB_00537at 551.471 kb on + strand, within OHPLBJKB_00537at 551.471 kb on + strand, within OHPLBJKB_00537at 551.519 kb on + strand, within OHPLBJKB_00537at 551.561 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.773 kb on + strand, within OHPLBJKB_00537at 551.773 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.780 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.933 kb on + strandat 551.933 kb on + strandat 551.942 kb on + strandat 551.942 kb on + strandat 551.942 kb on + strandat 552.010 kb on + strandat 552.016 kb on + strandat 552.016 kb on + strandat 552.016 kb on + strandat 552.016 kb on + strandat 552.073 kb on + strandat 552.073 kb on + strandat 552.077 kb on + strandat 552.112 kb on + strandat 552.112 kb on + strandat 552.222 kb on + strandat 552.807 kb on + strand, within OHPLBJKB_00538at 552.824 kb on + strand, within OHPLBJKB_00538at 553.200 kb on + strand, within OHPLBJKB_00538at 553.203 kb on + strand, within OHPLBJKB_00538at 553.226 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.422 kb on + strand, within OHPLBJKB_00538at 553.423 kb on - strand, within OHPLBJKB_00538at 553.423 kb on - strand, within OHPLBJKB_00538at 553.569 kb on + strand, within OHPLBJKB_00538at 553.579 kb on + strand, within OHPLBJKB_00538at 553.623 kb on + strand, within OHPLBJKB_00538at 553.624 kb on - strand, within OHPLBJKB_00538at 553.674 kb on + strand, within OHPLBJKB_00538at 553.722 kb on + strand, within OHPLBJKB_00538at 553.749 kb on + strand, within OHPLBJKB_00538at 553.875 kb on + strandat 554.042 kb on + strandat 554.043 kb on - strandat 554.043 kb on - strandat 554.043 kb on - strandat 554.043 kb on - strandat 554.044 kb on + strandat 554.044 kb on + strandat 554.044 kb on + strandat 554.045 kb on - strandat 554.045 kb on - strandat 554.045 kb on - strandat 554.045 kb on - strandat 554.116 kb on + strandat 554.116 kb on + strandat 554.124 kb on + strandat 554.168 kb on + strandat 554.320 kb on - strand, within OHPLBJKB_00539at 554.455 kb on + strand, within OHPLBJKB_00539at 554.455 kb on + strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.456 kb on - strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.467 kb on + strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.468 kb on - strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.473 kb on + strand, within OHPLBJKB_00539at 554.474 kb on - strand, within OHPLBJKB_00539at 554.474 kb on - strand, within OHPLBJKB_00539at 554.475 kb on + strand, within OHPLBJKB_00539at 554.476 kb on - strand, within OHPLBJKB_00539at 554.476 kb on - strand, within OHPLBJKB_00539at 554.593 kb on - strand, within OHPLBJKB_00539at 554.593 kb on - strand, within OHPLBJKB_00539at 554.595 kb on + strand, within OHPLBJKB_00539at 554.595 kb on + strand, within OHPLBJKB_00539at 554.596 kb on - strand, within OHPLBJKB_00539at 554.725 kb on + strand, within OHPLBJKB_00539at 554.726 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.807 kb on - strand, within OHPLBJKB_00539at 554.875 kb on + strand, within OHPLBJKB_00539at 554.877 kb on + strand, within OHPLBJKB_00539at 554.877 kb on + strand, within OHPLBJKB_00539at 554.975 kb on + strand, within OHPLBJKB_00539at 554.976 kb on - strand, within OHPLBJKB_00539at 554.976 kb on - strand, within OHPLBJKB_00539

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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551,125 + -0.4
551,163 + OHPLBJKB_00537 0.13 -0.6
551,164 - OHPLBJKB_00537 0.13 -0.6
551,188 + OHPLBJKB_00537 0.15 +0.3
551,188 + OHPLBJKB_00537 0.15 -1.8
551,188 + OHPLBJKB_00537 0.15 -2.5
551,188 + OHPLBJKB_00537 0.15 -0.1
551,244 + OHPLBJKB_00537 0.22 +0.1
551,244 + OHPLBJKB_00537 0.22 -1.3
551,245 - OHPLBJKB_00537 0.22 -1.4
551,245 - OHPLBJKB_00537 0.22 -1.1
551,246 + OHPLBJKB_00537 0.22 -1.2
551,246 + OHPLBJKB_00537 0.22 +0.6
551,264 + OHPLBJKB_00537 0.24 -1.2
551,264 + OHPLBJKB_00537 0.24 -0.4
551,264 + OHPLBJKB_00537 0.24 -1.3
551,264 + OHPLBJKB_00537 0.24 +0.1
551,343 + OHPLBJKB_00537 0.33 -1.2
551,351 + OHPLBJKB_00537 0.34 -0.7
551,361 + OHPLBJKB_00537 0.35 -1.3
551,361 + OHPLBJKB_00537 0.35 -1.2
551,363 + OHPLBJKB_00537 0.35 +0.6
551,363 + OHPLBJKB_00537 0.35 -0.9
551,363 + OHPLBJKB_00537 0.35 -1.1
551,363 + OHPLBJKB_00537 0.35 -1.7
551,367 + OHPLBJKB_00537 0.36 -0.9
551,396 + OHPLBJKB_00537 0.39 -1.2
551,435 + OHPLBJKB_00537 0.43 -1.7
551,441 + OHPLBJKB_00537 0.44 -1.8
551,441 + OHPLBJKB_00537 0.44 -1.0
551,441 + OHPLBJKB_00537 0.44 -0.3
551,469 + OHPLBJKB_00537 0.47 -0.2
551,469 + OHPLBJKB_00537 0.47 -1.2
551,471 + OHPLBJKB_00537 0.47 -1.8
551,471 + OHPLBJKB_00537 0.47 -0.6
551,519 + OHPLBJKB_00537 0.53 -0.0
551,561 + OHPLBJKB_00537 0.58 +0.2
551,765 + OHPLBJKB_00537 0.81 -0.7
551,765 + OHPLBJKB_00537 0.81 -0.7
551,765 + OHPLBJKB_00537 0.81 -1.0
551,765 + OHPLBJKB_00537 0.81 -0.4
551,765 + OHPLBJKB_00537 0.81 -0.9
551,773 + OHPLBJKB_00537 0.82 -0.5
551,773 + OHPLBJKB_00537 0.82 +0.3
551,777 + OHPLBJKB_00537 0.82 -0.3
551,777 + OHPLBJKB_00537 0.82 -0.7
551,777 + OHPLBJKB_00537 0.82 -0.3
551,777 + OHPLBJKB_00537 0.82 -1.1
551,777 + OHPLBJKB_00537 0.82 -1.2
551,777 + OHPLBJKB_00537 0.82 -0.0
551,777 + OHPLBJKB_00537 0.82 -0.8
551,780 + OHPLBJKB_00537 0.82 -0.6
551,784 + OHPLBJKB_00537 0.83 -2.1
551,784 + OHPLBJKB_00537 0.83 -1.4
551,784 + OHPLBJKB_00537 0.83 -1.6
551,784 + OHPLBJKB_00537 0.83 -0.7
551,933 + -0.2
551,933 + -0.4
551,942 + +1.0
551,942 + +0.9
551,942 + -0.5
552,010 + +0.3
552,016 + -0.1
552,016 + -0.3
552,016 + -1.7
552,016 + -2.5
552,073 + +1.1
552,073 + -0.9
552,077 + -2.2
552,112 + -1.6
552,112 + -1.0
552,222 + -0.4
552,807 + OHPLBJKB_00538 0.37 +0.8
552,824 + OHPLBJKB_00538 0.38 -0.2
553,200 + OHPLBJKB_00538 0.57 +1.0
553,203 + OHPLBJKB_00538 0.58 -0.7
553,226 + OHPLBJKB_00538 0.59 -0.4
553,422 + OHPLBJKB_00538 0.69 +0.1
553,422 + OHPLBJKB_00538 0.69 +0.3
553,422 + OHPLBJKB_00538 0.69 -1.4
553,422 + OHPLBJKB_00538 0.69 -0.0
553,423 - OHPLBJKB_00538 0.69 +0.3
553,423 - OHPLBJKB_00538 0.69 -1.4
553,569 + OHPLBJKB_00538 0.77 -1.6
553,579 + OHPLBJKB_00538 0.77 -0.3
553,623 + OHPLBJKB_00538 0.80 -0.9
553,624 - OHPLBJKB_00538 0.80 +0.6
553,674 + OHPLBJKB_00538 0.82 -0.4
553,722 + OHPLBJKB_00538 0.85 -0.9
553,749 + OHPLBJKB_00538 0.86 -2.4
553,875 + +0.6
554,042 + -0.1
554,043 - +1.9
554,043 - +0.4
554,043 - -0.6
554,043 - +0.0
554,044 + +0.4
554,044 + -0.1
554,044 + -0.7
554,045 - +0.0
554,045 - -1.0
554,045 - +0.1
554,045 - -0.6
554,116 + +0.2
554,116 + -0.2
554,124 + -0.4
554,168 + +0.1
554,320 - OHPLBJKB_00539 0.13 -0.4
554,455 + OHPLBJKB_00539 0.24 -0.6
554,455 + OHPLBJKB_00539 0.24 +0.1
554,456 - OHPLBJKB_00539 0.24 -0.9
554,456 - OHPLBJKB_00539 0.24 +0.8
554,456 - OHPLBJKB_00539 0.24 -0.7
554,456 - OHPLBJKB_00539 0.24 -0.3
554,456 - OHPLBJKB_00539 0.24 +0.0
554,456 - OHPLBJKB_00539 0.24 +0.7
554,456 - OHPLBJKB_00539 0.24 -0.9
554,456 - OHPLBJKB_00539 0.24 +1.1
554,456 - OHPLBJKB_00539 0.24 +0.3
554,467 + OHPLBJKB_00539 0.25 -0.5
554,467 + OHPLBJKB_00539 0.25 +1.0
554,467 + OHPLBJKB_00539 0.25 -1.1
554,467 + OHPLBJKB_00539 0.25 +0.3
554,467 + OHPLBJKB_00539 0.25 +0.6
554,467 + OHPLBJKB_00539 0.25 -0.4
554,467 + OHPLBJKB_00539 0.25 +0.4
554,467 + OHPLBJKB_00539 0.25 +0.0
554,468 - OHPLBJKB_00539 0.25 +0.3
554,468 - OHPLBJKB_00539 0.25 -0.4
554,468 - OHPLBJKB_00539 0.25 +0.6
554,468 - OHPLBJKB_00539 0.25 +0.3
554,468 - OHPLBJKB_00539 0.25 +0.1
554,468 - OHPLBJKB_00539 0.25 -2.1
554,468 - OHPLBJKB_00539 0.25 -0.1
554,473 + OHPLBJKB_00539 0.25 +2.0
554,473 + OHPLBJKB_00539 0.25 +1.0
554,473 + OHPLBJKB_00539 0.25 +0.1
554,473 + OHPLBJKB_00539 0.25 +0.2
554,474 - OHPLBJKB_00539 0.25 -0.1
554,474 - OHPLBJKB_00539 0.25 +0.1
554,475 + OHPLBJKB_00539 0.25 +0.9
554,476 - OHPLBJKB_00539 0.26 +0.1
554,476 - OHPLBJKB_00539 0.26 +0.6
554,593 - OHPLBJKB_00539 0.35 -0.6
554,593 - OHPLBJKB_00539 0.35 +0.1
554,595 + OHPLBJKB_00539 0.35 -2.1
554,595 + OHPLBJKB_00539 0.35 -0.3
554,596 - OHPLBJKB_00539 0.35 -0.0
554,725 + OHPLBJKB_00539 0.46 +1.6
554,726 - OHPLBJKB_00539 0.46 +0.8
554,807 - OHPLBJKB_00539 0.52 -0.2
554,807 - OHPLBJKB_00539 0.52 -0.7
554,807 - OHPLBJKB_00539 0.52 +0.9
554,807 - OHPLBJKB_00539 0.52 +0.0
554,875 + OHPLBJKB_00539 0.58 -0.8
554,877 + OHPLBJKB_00539 0.58 -1.6
554,877 + OHPLBJKB_00539 0.58 +0.5
554,975 + OHPLBJKB_00539 0.66 -0.0
554,976 - OHPLBJKB_00539 0.66 +0.5
554,976 - OHPLBJKB_00539 0.66 -1.0

Or see this region's nucleotide sequence