Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00056

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00054 and OHPLBJKB_00055 overlap by 4 nucleotidesOHPLBJKB_00055 and OHPLBJKB_00056 are separated by 290 nucleotidesOHPLBJKB_00056 and OHPLBJKB_00057 are separated by 39 nucleotidesOHPLBJKB_00057 and OHPLBJKB_00058 are separated by 220 nucleotides OHPLBJKB_00054: OHPLBJKB_00054 - DNA ligase B, at 60,148 to 61,830 _00054 OHPLBJKB_00055: OHPLBJKB_00055 - hypothetical protein, at 61,827 to 62,444 _00055 OHPLBJKB_00056: OHPLBJKB_00056 - hypothetical protein, at 62,735 to 63,142 _00056 OHPLBJKB_00057: OHPLBJKB_00057 - hypothetical protein, at 63,182 to 63,559 _00057 OHPLBJKB_00058: OHPLBJKB_00058 - hypothetical protein, at 63,780 to 64,643 _00058 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1 2at 61.828 kb on + strandat 61.828 kb on + strandat 61.828 kb on + strandat 61.829 kb on - strandat 61.829 kb on - strandat 61.849 kb on + strandat 61.850 kb on - strandat 61.871 kb on + strandat 61.872 kb on - strandat 61.887 kb on + strandat 61.922 kb on + strand, within OHPLBJKB_00055at 61.923 kb on - strand, within OHPLBJKB_00055at 61.940 kb on + strand, within OHPLBJKB_00055at 61.941 kb on - strand, within OHPLBJKB_00055at 61.948 kb on + strand, within OHPLBJKB_00055at 61.948 kb on + strand, within OHPLBJKB_00055at 61.948 kb on + strand, within OHPLBJKB_00055at 61.949 kb on - strand, within OHPLBJKB_00055at 61.949 kb on - strand, within OHPLBJKB_00055at 61.967 kb on - strand, within OHPLBJKB_00055at 61.999 kb on + strand, within OHPLBJKB_00055at 61.999 kb on + strand, within OHPLBJKB_00055at 61.999 kb on + strand, within OHPLBJKB_00055at 62.000 kb on - strand, within OHPLBJKB_00055at 62.000 kb on - strand, within OHPLBJKB_00055at 62.000 kb on - strand, within OHPLBJKB_00055at 62.042 kb on + strand, within OHPLBJKB_00055at 62.043 kb on - strand, within OHPLBJKB_00055at 62.096 kb on + strand, within OHPLBJKB_00055at 62.141 kb on + strand, within OHPLBJKB_00055at 62.142 kb on - strand, within OHPLBJKB_00055at 62.202 kb on + strand, within OHPLBJKB_00055at 62.227 kb on - strand, within OHPLBJKB_00055at 62.254 kb on + strand, within OHPLBJKB_00055at 62.255 kb on - strand, within OHPLBJKB_00055at 62.345 kb on + strand, within OHPLBJKB_00055at 62.346 kb on - strand, within OHPLBJKB_00055at 62.350 kb on - strand, within OHPLBJKB_00055at 62.350 kb on - strand, within OHPLBJKB_00055at 62.360 kb on + strand, within OHPLBJKB_00055at 62.361 kb on - strand, within OHPLBJKB_00055at 62.425 kb on + strandat 62.425 kb on + strandat 62.513 kb on - strandat 62.538 kb on + strandat 62.539 kb on - strandat 62.564 kb on + strandat 62.607 kb on + strandat 62.652 kb on + strandat 62.652 kb on + strandat 62.653 kb on - strandat 62.653 kb on - strandat 62.657 kb on - strandat 62.690 kb on + strandat 62.690 kb on + strandat 62.691 kb on - strandat 62.737 kb on - strandat 62.750 kb on - strandat 62.873 kb on - strand, within OHPLBJKB_00056at 62.875 kb on + strand, within OHPLBJKB_00056at 62.875 kb on + strand, within OHPLBJKB_00056at 62.876 kb on - strand, within OHPLBJKB_00056at 62.969 kb on - strand, within OHPLBJKB_00056at 63.029 kb on + strand, within OHPLBJKB_00056at 63.039 kb on + strand, within OHPLBJKB_00056at 63.039 kb on + strand, within OHPLBJKB_00056at 63.069 kb on - strand, within OHPLBJKB_00056at 63.130 kb on + strandat 63.131 kb on - strandat 63.184 kb on - strandat 63.238 kb on - strand, within OHPLBJKB_00057at 63.284 kb on + strand, within OHPLBJKB_00057at 63.285 kb on - strand, within OHPLBJKB_00057at 63.288 kb on - strand, within OHPLBJKB_00057at 63.350 kb on + strand, within OHPLBJKB_00057at 63.350 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.434 kb on + strand, within OHPLBJKB_00057at 63.487 kb on + strand, within OHPLBJKB_00057at 63.527 kb on + strandat 63.608 kb on + strandat 63.768 kb on + strandat 63.768 kb on + strandat 63.768 kb on + strandat 63.768 kb on + strandat 63.769 kb on - strandat 63.769 kb on - strandat 63.782 kb on - strandat 63.789 kb on - strandat 63.863 kb on + strandat 63.911 kb on + strand, within OHPLBJKB_00058at 63.911 kb on + strand, within OHPLBJKB_00058at 63.912 kb on - strand, within OHPLBJKB_00058at 63.912 kb on - strand, within OHPLBJKB_00058at 63.958 kb on + strand, within OHPLBJKB_00058at 63.959 kb on - strand, within OHPLBJKB_00058at 63.959 kb on - strand, within OHPLBJKB_00058at 64.124 kb on + strand, within OHPLBJKB_00058

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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61,828 + +0.6
61,828 + -1.0
61,828 + +0.7
61,829 - +0.0
61,829 - +0.3
61,849 + -0.2
61,850 - +0.4
61,871 + -1.1
61,872 - +0.6
61,887 + -0.0
61,922 + OHPLBJKB_00055 0.15 +0.0
61,923 - OHPLBJKB_00055 0.16 -0.3
61,940 + OHPLBJKB_00055 0.18 -0.5
61,941 - OHPLBJKB_00055 0.18 -0.2
61,948 + OHPLBJKB_00055 0.20 -0.4
61,948 + OHPLBJKB_00055 0.20 -1.2
61,948 + OHPLBJKB_00055 0.20 +0.4
61,949 - OHPLBJKB_00055 0.20 +0.5
61,949 - OHPLBJKB_00055 0.20 +0.2
61,967 - OHPLBJKB_00055 0.23 -0.1
61,999 + OHPLBJKB_00055 0.28 +0.5
61,999 + OHPLBJKB_00055 0.28 -0.4
61,999 + OHPLBJKB_00055 0.28 -0.1
62,000 - OHPLBJKB_00055 0.28 -0.4
62,000 - OHPLBJKB_00055 0.28 +0.8
62,000 - OHPLBJKB_00055 0.28 +0.1
62,042 + OHPLBJKB_00055 0.35 -0.2
62,043 - OHPLBJKB_00055 0.35 +1.0
62,096 + OHPLBJKB_00055 0.44 +0.1
62,141 + OHPLBJKB_00055 0.51 -0.6
62,142 - OHPLBJKB_00055 0.51 -0.1
62,202 + OHPLBJKB_00055 0.61 +1.8
62,227 - OHPLBJKB_00055 0.65 -0.1
62,254 + OHPLBJKB_00055 0.69 +0.0
62,255 - OHPLBJKB_00055 0.69 +0.6
62,345 + OHPLBJKB_00055 0.84 -0.0
62,346 - OHPLBJKB_00055 0.84 -1.4
62,350 - OHPLBJKB_00055 0.85 +0.9
62,350 - OHPLBJKB_00055 0.85 -0.9
62,360 + OHPLBJKB_00055 0.86 +0.0
62,361 - OHPLBJKB_00055 0.86 +0.2
62,425 + +0.4
62,425 + +0.0
62,513 - +0.4
62,538 + -0.8
62,539 - +0.6
62,564 + -0.2
62,607 + +1.4
62,652 + -0.7
62,652 + +0.5
62,653 - +0.3
62,653 - -0.4
62,657 - -0.4
62,690 + -0.6
62,690 + +0.7
62,691 - -0.1
62,737 - -0.2
62,750 - -0.3
62,873 - OHPLBJKB_00056 0.34 +0.3
62,875 + OHPLBJKB_00056 0.34 -0.1
62,875 + OHPLBJKB_00056 0.34 +0.4
62,876 - OHPLBJKB_00056 0.35 +0.5
62,969 - OHPLBJKB_00056 0.57 +0.5
63,029 + OHPLBJKB_00056 0.72 +1.2
63,039 + OHPLBJKB_00056 0.75 +0.4
63,039 + OHPLBJKB_00056 0.75 -0.0
63,069 - OHPLBJKB_00056 0.82 +0.7
63,130 + +0.8
63,131 - +0.1
63,184 - +0.5
63,238 - OHPLBJKB_00057 0.15 +0.3
63,284 + OHPLBJKB_00057 0.27 +0.4
63,285 - OHPLBJKB_00057 0.27 -0.4
63,288 - OHPLBJKB_00057 0.28 +0.2
63,350 + OHPLBJKB_00057 0.44 +0.9
63,350 + OHPLBJKB_00057 0.44 +1.5
63,353 + OHPLBJKB_00057 0.45 -0.1
63,353 + OHPLBJKB_00057 0.45 +0.3
63,353 + OHPLBJKB_00057 0.45 -0.5
63,354 - OHPLBJKB_00057 0.46 +1.3
63,354 - OHPLBJKB_00057 0.46 -0.2
63,354 - OHPLBJKB_00057 0.46 -0.0
63,434 + OHPLBJKB_00057 0.67 -0.8
63,487 + OHPLBJKB_00057 0.81 +0.2
63,527 + -0.7
63,608 + +0.4
63,768 + -0.1
63,768 + -0.5
63,768 + -0.6
63,768 + -0.4
63,769 - +0.1
63,769 - -0.4
63,782 - +0.3
63,789 - +0.2
63,863 + +0.5
63,911 + OHPLBJKB_00058 0.15 +0.0
63,911 + OHPLBJKB_00058 0.15 +0.6
63,912 - OHPLBJKB_00058 0.15 -0.9
63,912 - OHPLBJKB_00058 0.15 +0.9
63,958 + OHPLBJKB_00058 0.21 +0.3
63,959 - OHPLBJKB_00058 0.21 -0.6
63,959 - OHPLBJKB_00058 0.21 -0.3
64,124 + OHPLBJKB_00058 0.40 -0.9

Or see this region's nucleotide sequence