Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00055

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00054 and OHPLBJKB_00055 overlap by 4 nucleotidesOHPLBJKB_00055 and OHPLBJKB_00056 are separated by 290 nucleotidesOHPLBJKB_00056 and OHPLBJKB_00057 are separated by 39 nucleotides OHPLBJKB_00054: OHPLBJKB_00054 - DNA ligase B, at 60,148 to 61,830 _00054 OHPLBJKB_00055: OHPLBJKB_00055 - hypothetical protein, at 61,827 to 62,444 _00055 OHPLBJKB_00056: OHPLBJKB_00056 - hypothetical protein, at 62,735 to 63,142 _00056 OHPLBJKB_00057: OHPLBJKB_00057 - hypothetical protein, at 63,182 to 63,559 _00057 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 60.840 kb on - strand, within OHPLBJKB_00054at 60.879 kb on + strand, within OHPLBJKB_00054at 60.895 kb on + strand, within OHPLBJKB_00054at 60.895 kb on + strand, within OHPLBJKB_00054at 60.895 kb on + strand, within OHPLBJKB_00054at 60.895 kb on + strand, within OHPLBJKB_00054at 60.895 kb on + strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.896 kb on - strand, within OHPLBJKB_00054at 60.897 kb on + strand, within OHPLBJKB_00054at 60.898 kb on - strand, within OHPLBJKB_00054at 60.898 kb on - strand, within OHPLBJKB_00054at 60.935 kb on + strand, within OHPLBJKB_00054at 60.983 kb on + strand, within OHPLBJKB_00054at 60.983 kb on + strand, within OHPLBJKB_00054at 60.983 kb on + strand, within OHPLBJKB_00054at 60.983 kb on + strand, within OHPLBJKB_00054at 60.983 kb on + strand, within OHPLBJKB_00054at 60.989 kb on + strand, within OHPLBJKB_00054at 60.989 kb on + strand, within OHPLBJKB_00054at 60.989 kb on + strand, within OHPLBJKB_00054at 61.071 kb on - strand, within OHPLBJKB_00054at 61.127 kb on + strand, within OHPLBJKB_00054at 61.267 kb on - strand, within OHPLBJKB_00054at 61.308 kb on + strand, within OHPLBJKB_00054at 61.309 kb on - strand, within OHPLBJKB_00054at 61.338 kb on + strand, within OHPLBJKB_00054at 61.354 kb on + strand, within OHPLBJKB_00054at 61.354 kb on + strand, within OHPLBJKB_00054at 61.354 kb on + strand, within OHPLBJKB_00054at 61.355 kb on - strand, within OHPLBJKB_00054at 61.398 kb on - strand, within OHPLBJKB_00054at 61.488 kb on + strand, within OHPLBJKB_00054at 61.489 kb on - strand, within OHPLBJKB_00054at 61.489 kb on - strand, within OHPLBJKB_00054at 61.489 kb on - strand, within OHPLBJKB_00054at 61.505 kb on + strand, within OHPLBJKB_00054at 61.505 kb on + strand, within OHPLBJKB_00054at 61.523 kb on + strand, within OHPLBJKB_00054at 61.523 kb on + strand, within OHPLBJKB_00054at 61.523 kb on + strand, within OHPLBJKB_00054at 61.524 kb on - strand, within OHPLBJKB_00054at 61.524 kb on - strand, within OHPLBJKB_00054at 61.524 kb on - strand, within OHPLBJKB_00054at 61.565 kb on + strand, within OHPLBJKB_00054at 61.565 kb on + strand, within OHPLBJKB_00054at 61.566 kb on - strand, within OHPLBJKB_00054at 61.578 kb on + strand, within OHPLBJKB_00054at 61.579 kb on - strand, within OHPLBJKB_00054at 61.590 kb on + strand, within OHPLBJKB_00054at 61.651 kb on - strand, within OHPLBJKB_00054at 61.685 kb on + strandat 61.685 kb on + strandat 61.686 kb on - strandat 61.689 kb on + strandat 61.828 kb on + strandat 61.828 kb on + strandat 61.828 kb on + strandat 61.829 kb on - strandat 61.829 kb on - strandat 61.849 kb on + strandat 61.850 kb on - strandat 61.871 kb on + strandat 61.872 kb on - strandat 61.887 kb on + strandat 61.922 kb on + strand, within OHPLBJKB_00055at 61.923 kb on - strand, within OHPLBJKB_00055at 61.940 kb on + strand, within OHPLBJKB_00055at 61.941 kb on - strand, within OHPLBJKB_00055at 61.948 kb on + strand, within OHPLBJKB_00055at 61.948 kb on + strand, within OHPLBJKB_00055at 61.948 kb on + strand, within OHPLBJKB_00055at 61.949 kb on - strand, within OHPLBJKB_00055at 61.949 kb on - strand, within OHPLBJKB_00055at 61.967 kb on - strand, within OHPLBJKB_00055at 61.999 kb on + strand, within OHPLBJKB_00055at 61.999 kb on + strand, within OHPLBJKB_00055at 61.999 kb on + strand, within OHPLBJKB_00055at 62.000 kb on - strand, within OHPLBJKB_00055at 62.000 kb on - strand, within OHPLBJKB_00055at 62.000 kb on - strand, within OHPLBJKB_00055at 62.042 kb on + strand, within OHPLBJKB_00055at 62.043 kb on - strand, within OHPLBJKB_00055at 62.096 kb on + strand, within OHPLBJKB_00055at 62.141 kb on + strand, within OHPLBJKB_00055at 62.142 kb on - strand, within OHPLBJKB_00055at 62.202 kb on + strand, within OHPLBJKB_00055at 62.227 kb on - strand, within OHPLBJKB_00055at 62.254 kb on + strand, within OHPLBJKB_00055at 62.255 kb on - strand, within OHPLBJKB_00055at 62.345 kb on + strand, within OHPLBJKB_00055at 62.346 kb on - strand, within OHPLBJKB_00055at 62.350 kb on - strand, within OHPLBJKB_00055at 62.350 kb on - strand, within OHPLBJKB_00055at 62.360 kb on + strand, within OHPLBJKB_00055at 62.361 kb on - strand, within OHPLBJKB_00055at 62.425 kb on + strandat 62.425 kb on + strandat 62.513 kb on - strandat 62.538 kb on + strandat 62.539 kb on - strandat 62.564 kb on + strandat 62.607 kb on + strandat 62.652 kb on + strandat 62.652 kb on + strandat 62.653 kb on - strandat 62.653 kb on - strandat 62.657 kb on - strandat 62.690 kb on + strandat 62.690 kb on + strandat 62.691 kb on - strandat 62.737 kb on - strandat 62.750 kb on - strandat 62.873 kb on - strand, within OHPLBJKB_00056at 62.875 kb on + strand, within OHPLBJKB_00056at 62.875 kb on + strand, within OHPLBJKB_00056at 62.876 kb on - strand, within OHPLBJKB_00056at 62.969 kb on - strand, within OHPLBJKB_00056at 63.029 kb on + strand, within OHPLBJKB_00056at 63.039 kb on + strand, within OHPLBJKB_00056at 63.039 kb on + strand, within OHPLBJKB_00056at 63.069 kb on - strand, within OHPLBJKB_00056at 63.130 kb on + strandat 63.131 kb on - strandat 63.184 kb on - strandat 63.238 kb on - strand, within OHPLBJKB_00057at 63.284 kb on + strand, within OHPLBJKB_00057at 63.285 kb on - strand, within OHPLBJKB_00057at 63.288 kb on - strand, within OHPLBJKB_00057at 63.350 kb on + strand, within OHPLBJKB_00057at 63.350 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.353 kb on + strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.354 kb on - strand, within OHPLBJKB_00057at 63.434 kb on + strand, within OHPLBJKB_00057

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
60,840 - OHPLBJKB_00054 0.41 +0.2
60,879 + OHPLBJKB_00054 0.43 +0.9
60,895 + OHPLBJKB_00054 0.44 +0.1
60,895 + OHPLBJKB_00054 0.44 +0.1
60,895 + OHPLBJKB_00054 0.44 -0.1
60,895 + OHPLBJKB_00054 0.44 +0.4
60,895 + OHPLBJKB_00054 0.44 -2.0
60,896 - OHPLBJKB_00054 0.44 -1.1
60,896 - OHPLBJKB_00054 0.44 +1.1
60,896 - OHPLBJKB_00054 0.44 -0.8
60,896 - OHPLBJKB_00054 0.44 +0.3
60,896 - OHPLBJKB_00054 0.44 -0.4
60,896 - OHPLBJKB_00054 0.44 -0.2
60,896 - OHPLBJKB_00054 0.44 -0.7
60,896 - OHPLBJKB_00054 0.44 -0.2
60,896 - OHPLBJKB_00054 0.44 -1.5
60,896 - OHPLBJKB_00054 0.44 +0.4
60,896 - OHPLBJKB_00054 0.44 -1.2
60,896 - OHPLBJKB_00054 0.44 -0.2
60,897 + OHPLBJKB_00054 0.45 -0.3
60,898 - OHPLBJKB_00054 0.45 +0.4
60,898 - OHPLBJKB_00054 0.45 +0.4
60,935 + OHPLBJKB_00054 0.47 -0.7
60,983 + OHPLBJKB_00054 0.50 -0.8
60,983 + OHPLBJKB_00054 0.50 -0.3
60,983 + OHPLBJKB_00054 0.50 +0.7
60,983 + OHPLBJKB_00054 0.50 -0.4
60,983 + OHPLBJKB_00054 0.50 +0.4
60,989 + OHPLBJKB_00054 0.50 +0.3
60,989 + OHPLBJKB_00054 0.50 +0.9
60,989 + OHPLBJKB_00054 0.50 +0.1
61,071 - OHPLBJKB_00054 0.55 -0.1
61,127 + OHPLBJKB_00054 0.58 +0.0
61,267 - OHPLBJKB_00054 0.66 -1.1
61,308 + OHPLBJKB_00054 0.69 +0.4
61,309 - OHPLBJKB_00054 0.69 -0.8
61,338 + OHPLBJKB_00054 0.71 -0.4
61,354 + OHPLBJKB_00054 0.72 +1.4
61,354 + OHPLBJKB_00054 0.72 +0.1
61,354 + OHPLBJKB_00054 0.72 -0.3
61,355 - OHPLBJKB_00054 0.72 -0.3
61,398 - OHPLBJKB_00054 0.74 -1.2
61,488 + OHPLBJKB_00054 0.80 +0.4
61,489 - OHPLBJKB_00054 0.80 +0.0
61,489 - OHPLBJKB_00054 0.80 -0.6
61,489 - OHPLBJKB_00054 0.80 -0.1
61,505 + OHPLBJKB_00054 0.81 +0.2
61,505 + OHPLBJKB_00054 0.81 +0.3
61,523 + OHPLBJKB_00054 0.82 +0.3
61,523 + OHPLBJKB_00054 0.82 -0.6
61,523 + OHPLBJKB_00054 0.82 +0.8
61,524 - OHPLBJKB_00054 0.82 -0.5
61,524 - OHPLBJKB_00054 0.82 -0.9
61,524 - OHPLBJKB_00054 0.82 -1.5
61,565 + OHPLBJKB_00054 0.84 -0.1
61,565 + OHPLBJKB_00054 0.84 -0.7
61,566 - OHPLBJKB_00054 0.84 +1.3
61,578 + OHPLBJKB_00054 0.85 +0.3
61,579 - OHPLBJKB_00054 0.85 +0.5
61,590 + OHPLBJKB_00054 0.86 +1.1
61,651 - OHPLBJKB_00054 0.89 -0.3
61,685 + +0.1
61,685 + -1.4
61,686 - -0.7
61,689 + +1.1
61,828 + +0.6
61,828 + -1.0
61,828 + +0.7
61,829 - +0.0
61,829 - +0.3
61,849 + -0.2
61,850 - +0.4
61,871 + -1.1
61,872 - +0.6
61,887 + -0.0
61,922 + OHPLBJKB_00055 0.15 +0.0
61,923 - OHPLBJKB_00055 0.16 -0.3
61,940 + OHPLBJKB_00055 0.18 -0.5
61,941 - OHPLBJKB_00055 0.18 -0.2
61,948 + OHPLBJKB_00055 0.20 -0.4
61,948 + OHPLBJKB_00055 0.20 -1.2
61,948 + OHPLBJKB_00055 0.20 +0.4
61,949 - OHPLBJKB_00055 0.20 +0.5
61,949 - OHPLBJKB_00055 0.20 +0.2
61,967 - OHPLBJKB_00055 0.23 -0.1
61,999 + OHPLBJKB_00055 0.28 +0.5
61,999 + OHPLBJKB_00055 0.28 -0.4
61,999 + OHPLBJKB_00055 0.28 -0.1
62,000 - OHPLBJKB_00055 0.28 -0.4
62,000 - OHPLBJKB_00055 0.28 +0.8
62,000 - OHPLBJKB_00055 0.28 +0.1
62,042 + OHPLBJKB_00055 0.35 -0.2
62,043 - OHPLBJKB_00055 0.35 +1.0
62,096 + OHPLBJKB_00055 0.44 +0.1
62,141 + OHPLBJKB_00055 0.51 -0.6
62,142 - OHPLBJKB_00055 0.51 -0.1
62,202 + OHPLBJKB_00055 0.61 +1.8
62,227 - OHPLBJKB_00055 0.65 -0.1
62,254 + OHPLBJKB_00055 0.69 +0.0
62,255 - OHPLBJKB_00055 0.69 +0.6
62,345 + OHPLBJKB_00055 0.84 -0.0
62,346 - OHPLBJKB_00055 0.84 -1.4
62,350 - OHPLBJKB_00055 0.85 +0.9
62,350 - OHPLBJKB_00055 0.85 -0.9
62,360 + OHPLBJKB_00055 0.86 +0.0
62,361 - OHPLBJKB_00055 0.86 +0.2
62,425 + +0.4
62,425 + +0.0
62,513 - +0.4
62,538 + -0.8
62,539 - +0.6
62,564 + -0.2
62,607 + +1.4
62,652 + -0.7
62,652 + +0.5
62,653 - +0.3
62,653 - -0.4
62,657 - -0.4
62,690 + -0.6
62,690 + +0.7
62,691 - -0.1
62,737 - -0.2
62,750 - -0.3
62,873 - OHPLBJKB_00056 0.34 +0.3
62,875 + OHPLBJKB_00056 0.34 -0.1
62,875 + OHPLBJKB_00056 0.34 +0.4
62,876 - OHPLBJKB_00056 0.35 +0.5
62,969 - OHPLBJKB_00056 0.57 +0.5
63,029 + OHPLBJKB_00056 0.72 +1.2
63,039 + OHPLBJKB_00056 0.75 +0.4
63,039 + OHPLBJKB_00056 0.75 -0.0
63,069 - OHPLBJKB_00056 0.82 +0.7
63,130 + +0.8
63,131 - +0.1
63,184 - +0.5
63,238 - OHPLBJKB_00057 0.15 +0.3
63,284 + OHPLBJKB_00057 0.27 +0.4
63,285 - OHPLBJKB_00057 0.27 -0.4
63,288 - OHPLBJKB_00057 0.28 +0.2
63,350 + OHPLBJKB_00057 0.44 +0.9
63,350 + OHPLBJKB_00057 0.44 +1.5
63,353 + OHPLBJKB_00057 0.45 -0.1
63,353 + OHPLBJKB_00057 0.45 +0.3
63,353 + OHPLBJKB_00057 0.45 -0.5
63,354 - OHPLBJKB_00057 0.46 +1.3
63,354 - OHPLBJKB_00057 0.46 -0.2
63,354 - OHPLBJKB_00057 0.46 -0.0
63,434 + OHPLBJKB_00057 0.67 -0.8

Or see this region's nucleotide sequence