Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06874 and MPMX19_06875 overlap by 8 nucleotides MPMX19_06875 and MPMX19_06876 are separated by 235 nucleotides MPMX19_06876 and MPMX19_06877 overlap by 4 nucleotides
MPMX19_06874: MPMX19_06874 - hypothetical protein, at 145,614 to 146,402
_06874
MPMX19_06875: MPMX19_06875 - Carnitinyl-CoA dehydratase, at 146,395 to 147,159
_06875
MPMX19_06876: MPMX19_06876 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 147,395 to 148,471
_06876
MPMX19_06877: MPMX19_06877 - hypothetical protein, at 148,468 to 149,637
_06877
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 146.687 kb on + strand, within MPMX19_06875 at 146.688 kb on - strand, within MPMX19_06875 at 146.856 kb on - strand, within MPMX19_06875 at 147.139 kb on + strand at 147.433 kb on - strand at 147.462 kb on + strand at 147.462 kb on + strand at 147.495 kb on + strand at 147.496 kb on - strand at 147.496 kb on - strand at 147.703 kb on - strand, within MPMX19_06876 at 147.703 kb on - strand, within MPMX19_06876 at 147.753 kb on + strand, within MPMX19_06876 at 147.753 kb on + strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.104 kb on - strand, within MPMX19_06876 at 148.204 kb on - strand, within MPMX19_06876 at 148.204 kb on - strand, within MPMX19_06876 at 148.204 kb on - strand, within MPMX19_06876 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.258 kb on + strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877 at 149.259 kb on - strand, within MPMX19_06877
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 146,687 + MPMX19_06875 0.38 -0.5 146,688 - MPMX19_06875 0.38 -0.3 146,856 - MPMX19_06875 0.60 +0.8 147,139 + +0.3 147,433 - +0.5 147,462 + +1.0 147,462 + -2.1 147,495 + +0.8 147,496 - +0.1 147,496 - -0.7 147,703 - MPMX19_06876 0.29 +0.9 147,703 - MPMX19_06876 0.29 -0.2 147,753 + MPMX19_06876 0.33 -0.1 147,753 + MPMX19_06876 0.33 -0.1 148,104 - MPMX19_06876 0.66 -1.1 148,104 - MPMX19_06876 0.66 +0.4 148,104 - MPMX19_06876 0.66 -2.1 148,104 - MPMX19_06876 0.66 -1.6 148,204 - MPMX19_06876 0.75 -1.9 148,204 - MPMX19_06876 0.75 -1.2 148,204 - MPMX19_06876 0.75 -1.2 149,258 + MPMX19_06877 0.68 -1.8 149,258 + MPMX19_06877 0.68 +0.7 149,258 + MPMX19_06877 0.68 -0.8 149,258 + MPMX19_06877 0.68 -0.4 149,258 + MPMX19_06877 0.68 -0.3 149,258 + MPMX19_06877 0.68 +0.3 149,258 + MPMX19_06877 0.68 +0.1 149,258 + MPMX19_06877 0.68 -1.4 149,258 + MPMX19_06877 0.68 +0.5 149,259 - MPMX19_06877 0.68 +0.3 149,259 - MPMX19_06877 0.68 -2.4 149,259 - MPMX19_06877 0.68 -0.2 149,259 - MPMX19_06877 0.68 +0.5 149,259 - MPMX19_06877 0.68 -1.8 149,259 - MPMX19_06877 0.68 -2.2 149,259 - MPMX19_06877 0.68 -0.7
Or see this region's nucleotide sequence