Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06486 and MPMX19_06487 are separated by 43 nucleotides MPMX19_06487 and MPMX19_06488 are separated by 390 nucleotides MPMX19_06488 and MPMX19_06489 are separated by 25 nucleotides MPMX19_06489 and MPMX19_06490 overlap by 4 nucleotides
MPMX19_06486: MPMX19_06486 - Phenylacetate-coenzyme A ligase, at 269,430 to 270,764
_06486
MPMX19_06487: MPMX19_06487 - hypothetical protein, at 270,808 to 271,050
_06487
MPMX19_06488: MPMX19_06488 - Taurine-binding periplasmic protein, at 271,441 to 272,457
_06488
MPMX19_06489: MPMX19_06489 - Taurine import ATP-binding protein TauB, at 272,483 to 273,286
_06489
MPMX19_06490: MPMX19_06490 - Putative aliphatic sulfonates transport permease protein SsuC, at 273,283 to 274,134
_06490
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 270.473 kb on - strand, within MPMX19_06486 at 270.473 kb on - strand, within MPMX19_06486 at 270.473 kb on - strand, within MPMX19_06486 at 270.473 kb on - strand, within MPMX19_06486 at 270.635 kb on - strand at 270.652 kb on + strand at 270.652 kb on + strand at 270.652 kb on + strand at 270.652 kb on + strand at 270.740 kb on - strand at 270.740 kb on - strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.787 kb on + strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 270.788 kb on - strand at 271.064 kb on - strand at 271.064 kb on - strand at 271.188 kb on - strand at 271.197 kb on + strand at 271.257 kb on + strand at 271.257 kb on + strand at 271.257 kb on + strand at 271.258 kb on - strand at 271.258 kb on - strand at 271.258 kb on - strand at 271.258 kb on - strand at 271.258 kb on - strand at 271.260 kb on - strand at 271.299 kb on - strand at 271.371 kb on + strand at 271.371 kb on + strand at 271.371 kb on + strand at 271.372 kb on - strand at 271.372 kb on - strand at 271.469 kb on - strand at 271.469 kb on - strand at 271.469 kb on - strand at 271.469 kb on - strand at 271.690 kb on + strand, within MPMX19_06488 at 271.690 kb on + strand, within MPMX19_06488 at 271.690 kb on + strand, within MPMX19_06488 at 272.158 kb on + strand, within MPMX19_06488 at 272.158 kb on + strand, within MPMX19_06488 at 272.159 kb on - strand, within MPMX19_06488 at 272.159 kb on - strand, within MPMX19_06488 at 272.347 kb on - strand, within MPMX19_06488 at 272.437 kb on + strand at 272.437 kb on + strand at 272.437 kb on + strand at 272.437 kb on + strand at 272.672 kb on - strand, within MPMX19_06489 at 272.672 kb on - strand, within MPMX19_06489 at 272.672 kb on - strand, within MPMX19_06489 at 273.215 kb on + strand at 273.215 kb on + strand at 273.215 kb on + strand at 273.216 kb on - strand at 273.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 270,473 - MPMX19_06486 0.78 -0.6 270,473 - MPMX19_06486 0.78 -1.3 270,473 - MPMX19_06486 0.78 -0.7 270,473 - MPMX19_06486 0.78 -0.2 270,635 - -2.4 270,652 + -0.4 270,652 + +0.4 270,652 + -0.4 270,652 + -0.1 270,740 - +0.9 270,740 - +0.0 270,787 + +0.1 270,787 + +0.7 270,787 + -0.9 270,787 + -0.1 270,787 + +0.5 270,787 + -2.2 270,787 + +0.9 270,787 + -0.7 270,787 + -0.4 270,787 + -0.4 270,787 + +0.8 270,787 + -0.1 270,787 + +0.0 270,787 + -0.8 270,787 + -0.7 270,787 + +0.2 270,787 + -1.0 270,787 + +0.9 270,787 + -0.4 270,787 + +0.4 270,787 + -0.1 270,787 + +0.1 270,787 + -0.1 270,788 - -0.4 270,788 - -0.1 270,788 - -1.7 270,788 - -1.4 270,788 - -1.8 270,788 - -1.0 270,788 - -1.7 270,788 - -0.2 270,788 - -0.1 270,788 - -3.0 270,788 - +1.1 270,788 - -2.4 271,064 - +0.9 271,064 - -0.2 271,188 - +0.6 271,197 + +0.4 271,257 + -1.1 271,257 + +0.7 271,257 + +1.2 271,258 - -0.4 271,258 - -0.9 271,258 - -0.5 271,258 - -1.2 271,258 - -1.5 271,260 - -0.9 271,299 - +0.5 271,371 + -0.1 271,371 + -0.9 271,371 + -0.5 271,372 - +0.2 271,372 - -1.8 271,469 - +0.1 271,469 - +0.1 271,469 - -1.4 271,469 - +0.8 271,690 + MPMX19_06488 0.24 -0.9 271,690 + MPMX19_06488 0.24 -1.8 271,690 + MPMX19_06488 0.24 -2.4 272,158 + MPMX19_06488 0.71 +1.3 272,158 + MPMX19_06488 0.71 +1.0 272,159 - MPMX19_06488 0.71 +0.9 272,159 - MPMX19_06488 0.71 +2.2 272,347 - MPMX19_06488 0.89 +0.1 272,437 + +0.3 272,437 + +0.1 272,437 + +0.4 272,437 + -0.1 272,672 - MPMX19_06489 0.24 +0.5 272,672 - MPMX19_06489 0.24 -0.9 272,672 - MPMX19_06489 0.24 -0.7 273,215 + -1.9 273,215 + +0.8 273,215 + +0.6 273,216 - -1.5 273,216 - +0.9
Or see this region's nucleotide sequence