Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05587 and MPMX19_05588 are separated by 14 nucleotides MPMX19_05588 and MPMX19_05589 are separated by 12 nucleotides MPMX19_05589 and MPMX19_05590 are separated by 134 nucleotides
MPMX19_05587: MPMX19_05587 - Membrane lipoprotein TmpC, at 298,039 to 299,034
_05587
MPMX19_05588: MPMX19_05588 - Galactose/methyl galactoside import ATP-binding protein MglA, at 299,049 to 300,593
_05588
MPMX19_05589: MPMX19_05589 - hypothetical protein, at 300,606 to 301,319
_05589
MPMX19_05590: MPMX19_05590 - HTH-type transcriptional regulator SyrM 1, at 301,454 to 302,374
_05590
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.191 kb on + strand, within MPMX19_05587 at 298.192 kb on - strand, within MPMX19_05587 at 298.232 kb on - strand, within MPMX19_05587 at 298.550 kb on - strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.837 kb on + strand, within MPMX19_05587 at 298.838 kb on - strand, within MPMX19_05587 at 298.919 kb on - strand, within MPMX19_05587 at 298.919 kb on - strand, within MPMX19_05587 at 299.226 kb on + strand, within MPMX19_05588 at 299.226 kb on + strand, within MPMX19_05588 at 299.226 kb on + strand, within MPMX19_05588 at 299.227 kb on - strand, within MPMX19_05588 at 299.227 kb on - strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.232 kb on + strand, within MPMX19_05588 at 299.233 kb on - strand, within MPMX19_05588 at 299.233 kb on - strand, within MPMX19_05588 at 299.233 kb on - strand, within MPMX19_05588 at 299.541 kb on + strand, within MPMX19_05588 at 299.541 kb on + strand, within MPMX19_05588 at 300.249 kb on + strand, within MPMX19_05588 at 300.249 kb on + strand, within MPMX19_05588 at 300.250 kb on - strand, within MPMX19_05588 at 300.250 kb on - strand, within MPMX19_05588 at 300.250 kb on - strand, within MPMX19_05588 at 300.631 kb on + strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.632 kb on - strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.641 kb on - strand at 300.641 kb on - strand at 300.844 kb on + strand, within MPMX19_05589 at 300.845 kb on - strand, within MPMX19_05589 at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.356 kb on + strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.357 kb on - strand at 301.419 kb on + strand at 301.420 kb on - strand at 301.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 298,050 + -1.0 298,050 + +1.0 298,050 + -0.2 298,050 + -1.0 298,050 + +0.3 298,051 - -0.5 298,051 - -1.2 298,051 - -0.4 298,051 - +0.8 298,051 - +0.6 298,051 - -0.3 298,189 + MPMX19_05587 0.15 -0.1 298,189 + MPMX19_05587 0.15 +0.3 298,189 + MPMX19_05587 0.15 -1.0 298,189 + MPMX19_05587 0.15 -0.8 298,189 + MPMX19_05587 0.15 -0.5 298,189 + MPMX19_05587 0.15 +1.4 298,189 + MPMX19_05587 0.15 -0.7 298,189 + MPMX19_05587 0.15 +0.3 298,189 + MPMX19_05587 0.15 -1.2 298,189 + MPMX19_05587 0.15 -0.1 298,189 + MPMX19_05587 0.15 +1.4 298,189 + MPMX19_05587 0.15 +1.0 298,189 + MPMX19_05587 0.15 -1.5 298,189 + MPMX19_05587 0.15 +0.3 298,189 + MPMX19_05587 0.15 -1.1 298,189 + MPMX19_05587 0.15 +0.1 298,189 + MPMX19_05587 0.15 +0.4 298,189 + MPMX19_05587 0.15 -0.2 298,190 - MPMX19_05587 0.15 +0.5 298,190 - MPMX19_05587 0.15 -0.7 298,190 - MPMX19_05587 0.15 +0.8 298,190 - MPMX19_05587 0.15 +1.2 298,190 - MPMX19_05587 0.15 +0.0 298,190 - MPMX19_05587 0.15 -0.0 298,191 + MPMX19_05587 0.15 +1.5 298,192 - MPMX19_05587 0.15 +1.2 298,232 - MPMX19_05587 0.19 +0.0 298,550 - MPMX19_05587 0.51 -0.2 298,837 + MPMX19_05587 0.80 -0.1 298,837 + MPMX19_05587 0.80 +2.0 298,837 + MPMX19_05587 0.80 +0.6 298,837 + MPMX19_05587 0.80 +0.9 298,838 - MPMX19_05587 0.80 -0.6 298,919 - MPMX19_05587 0.88 +1.3 298,919 - MPMX19_05587 0.88 -0.2 299,226 + MPMX19_05588 0.11 -1.3 299,226 + MPMX19_05588 0.11 -2.0 299,226 + MPMX19_05588 0.11 +0.4 299,227 - MPMX19_05588 0.12 +0.2 299,227 - MPMX19_05588 0.12 +0.3 299,232 + MPMX19_05588 0.12 -0.4 299,232 + MPMX19_05588 0.12 -0.6 299,232 + MPMX19_05588 0.12 +0.1 299,232 + MPMX19_05588 0.12 -0.1 299,233 - MPMX19_05588 0.12 +0.2 299,233 - MPMX19_05588 0.12 -1.4 299,233 - MPMX19_05588 0.12 -0.0 299,541 + MPMX19_05588 0.32 -0.8 299,541 + MPMX19_05588 0.32 -0.2 300,249 + MPMX19_05588 0.78 -1.0 300,249 + MPMX19_05588 0.78 -0.1 300,250 - MPMX19_05588 0.78 +0.6 300,250 - MPMX19_05588 0.78 +1.0 300,250 - MPMX19_05588 0.78 +1.6 300,631 + +1.8 300,632 - +0.3 300,632 - +0.4 300,632 - +0.6 300,632 - +0.4 300,632 - -2.2 300,640 + -0.1 300,640 + -0.3 300,640 + -1.6 300,640 + -0.7 300,640 + -0.1 300,640 + -0.3 300,640 + +0.0 300,641 - -1.3 300,641 - +0.5 300,844 + MPMX19_05589 0.33 +1.6 300,845 - MPMX19_05589 0.33 -0.9 301,356 + -0.4 301,356 + -0.2 301,356 + -0.5 301,356 + +0.2 301,356 + -1.1 301,356 + -0.7 301,356 + +0.4 301,356 + +0.2 301,356 + -0.4 301,356 + -0.1 301,356 + +0.9 301,356 + +0.3 301,356 + -1.3 301,356 + -0.7 301,356 + +0.2 301,356 + -0.1 301,356 + +0.5 301,356 + +0.4 301,356 + -0.2 301,356 + -1.4 301,356 + +0.4 301,356 + -0.1 301,356 + -0.4 301,356 + +0.2 301,356 + +0.4 301,356 + -0.1 301,356 + +0.5 301,356 + -0.1 301,356 + +1.0 301,357 - -2.4 301,357 - -0.7 301,357 - +0.6 301,357 - +0.3 301,357 - +0.0 301,357 - -0.4 301,357 - +0.3 301,357 - +0.6 301,357 - -0.3 301,357 - -1.3 301,357 - -0.3 301,357 - +0.3 301,357 - -1.3 301,357 - -1.8 301,357 - -0.4 301,357 - -1.6 301,357 - -0.8 301,357 - -1.8 301,357 - -0.7 301,357 - -0.1 301,357 - -1.0 301,357 - +0.4 301,357 - +0.0 301,357 - -0.3 301,357 - +0.4 301,357 - -0.9 301,357 - +0.3 301,357 - +0.7 301,357 - +1.3 301,357 - -0.5 301,357 - -1.1 301,357 - +0.2 301,357 - +2.8 301,419 + -1.8 301,420 - -1.1 301,443 - -1.4
Or see this region's nucleotide sequence