Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04961 and MPMX19_04962 are separated by 64 nucleotides MPMX19_04962 and MPMX19_04963 are separated by 87 nucleotides MPMX19_04963 and MPMX19_04964 are separated by 63 nucleotides
MPMX19_04961: MPMX19_04961 - hypothetical protein, at 424,769 to 425,533
_04961
MPMX19_04962: MPMX19_04962 - hypothetical protein, at 425,598 to 426,269
_04962
MPMX19_04963: MPMX19_04963 - Cysteine desulfurase IscS, at 426,357 to 427,499
_04963
MPMX19_04964: MPMX19_04964 - hypothetical protein, at 427,563 to 428,927
_04964
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.411 kb on + strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.412 kb on - strand, within MPMX19_04961 at 425.429 kb on + strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.430 kb on - strand, within MPMX19_04961 at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.617 kb on + strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 425.618 kb on - strand at 426.049 kb on + strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962 at 426.050 kb on - strand, within MPMX19_04962 at 426.898 kb on + strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 426.899 kb on - strand, within MPMX19_04963 at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.492 kb on + strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.493 kb on - strand at 427.508 kb on - strand at 427.792 kb on + strand, within MPMX19_04964 at 427.792 kb on + strand, within MPMX19_04964 at 427.792 kb on + strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.793 kb on - strand, within MPMX19_04964 at 427.993 kb on + strand, within MPMX19_04964 at 427.993 kb on + strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.994 kb on - strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.996 kb on + strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 427.997 kb on - strand, within MPMX19_04964 at 428.002 kb on + strand, within MPMX19_04964 at 428.002 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.014 kb on + strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.015 kb on - strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.042 kb on + strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.043 kb on - strand, within MPMX19_04964 at 428.044 kb on + strand, within MPMX19_04964 at 428.044 kb on + strand, within MPMX19_04964 at 428.044 kb on + strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.045 kb on - strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.263 kb on + strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.264 kb on - strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.383 kb on + strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.384 kb on - strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.419 kb on + strand, within MPMX19_04964 at 428.420 kb on - strand, within MPMX19_04964 at 428.420 kb on - strand, within MPMX19_04964 at 428.420 kb on - strand, within MPMX19_04964
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 425,411 + MPMX19_04961 0.84 -0.3 425,411 + MPMX19_04961 0.84 -0.5 425,411 + MPMX19_04961 0.84 -1.5 425,411 + MPMX19_04961 0.84 +0.6 425,411 + MPMX19_04961 0.84 -1.6 425,411 + MPMX19_04961 0.84 -0.3 425,411 + MPMX19_04961 0.84 -0.2 425,411 + MPMX19_04961 0.84 +0.4 425,412 - MPMX19_04961 0.84 -0.8 425,412 - MPMX19_04961 0.84 -0.8 425,412 - MPMX19_04961 0.84 +1.3 425,412 - MPMX19_04961 0.84 +0.8 425,412 - MPMX19_04961 0.84 -0.2 425,412 - MPMX19_04961 0.84 +0.6 425,412 - MPMX19_04961 0.84 -0.3 425,429 + MPMX19_04961 0.86 -0.9 425,430 - MPMX19_04961 0.86 -1.2 425,430 - MPMX19_04961 0.86 -1.2 425,430 - MPMX19_04961 0.86 -0.5 425,617 + +0.2 425,617 + +0.2 425,617 + -1.2 425,617 + -0.2 425,617 + -0.9 425,617 + -0.0 425,618 - -1.4 425,618 - -0.6 425,618 - -0.8 425,618 - -2.9 426,049 + MPMX19_04962 0.67 -0.8 426,050 - MPMX19_04962 0.67 -0.7 426,050 - MPMX19_04962 0.67 -1.2 426,898 + MPMX19_04963 0.47 -0.2 426,899 - MPMX19_04963 0.47 -0.0 426,899 - MPMX19_04963 0.47 -0.7 426,899 - MPMX19_04963 0.47 -0.8 426,899 - MPMX19_04963 0.47 -1.2 427,492 + -1.0 427,492 + +0.1 427,492 + +0.4 427,492 + -1.0 427,492 + +0.8 427,492 + -1.9 427,492 + -0.1 427,493 - -0.0 427,493 - -0.8 427,493 - -1.8 427,493 - -0.1 427,493 - +0.8 427,493 - -1.2 427,493 - -0.8 427,493 - -0.7 427,493 - -0.0 427,493 - -2.1 427,493 - +0.4 427,508 - -0.2 427,792 + MPMX19_04964 0.17 +1.2 427,792 + MPMX19_04964 0.17 -1.4 427,792 + MPMX19_04964 0.17 -0.6 427,793 - MPMX19_04964 0.17 -1.1 427,793 - MPMX19_04964 0.17 -0.4 427,793 - MPMX19_04964 0.17 -0.0 427,793 - MPMX19_04964 0.17 -2.5 427,793 - MPMX19_04964 0.17 -0.8 427,793 - MPMX19_04964 0.17 -0.3 427,793 - MPMX19_04964 0.17 -0.5 427,793 - MPMX19_04964 0.17 -1.2 427,993 + MPMX19_04964 0.32 -2.3 427,993 + MPMX19_04964 0.32 +1.1 427,994 - MPMX19_04964 0.32 -0.6 427,994 - MPMX19_04964 0.32 +0.6 427,994 - MPMX19_04964 0.32 -1.4 427,994 - MPMX19_04964 0.32 -0.8 427,996 + MPMX19_04964 0.32 -0.8 427,996 + MPMX19_04964 0.32 +0.6 427,996 + MPMX19_04964 0.32 -0.1 427,996 + MPMX19_04964 0.32 -0.6 427,996 + MPMX19_04964 0.32 -0.0 427,996 + MPMX19_04964 0.32 -0.1 427,996 + MPMX19_04964 0.32 -1.2 427,996 + MPMX19_04964 0.32 -0.0 427,996 + MPMX19_04964 0.32 +1.2 427,996 + MPMX19_04964 0.32 -2.0 427,996 + MPMX19_04964 0.32 -0.4 427,996 + MPMX19_04964 0.32 -1.2 427,996 + MPMX19_04964 0.32 +1.4 427,996 + MPMX19_04964 0.32 +0.3 427,996 + MPMX19_04964 0.32 +0.8 427,996 + MPMX19_04964 0.32 -0.7 427,997 - MPMX19_04964 0.32 -0.2 427,997 - MPMX19_04964 0.32 -0.9 427,997 - MPMX19_04964 0.32 -1.2 427,997 - MPMX19_04964 0.32 -1.0 427,997 - MPMX19_04964 0.32 -0.2 427,997 - MPMX19_04964 0.32 -0.0 427,997 - MPMX19_04964 0.32 -0.2 427,997 - MPMX19_04964 0.32 -1.2 427,997 - MPMX19_04964 0.32 +0.3 427,997 - MPMX19_04964 0.32 -1.4 427,997 - MPMX19_04964 0.32 -0.0 427,997 - MPMX19_04964 0.32 -0.8 427,997 - MPMX19_04964 0.32 +0.6 427,997 - MPMX19_04964 0.32 +0.6 427,997 - MPMX19_04964 0.32 -0.8 427,997 - MPMX19_04964 0.32 -0.8 427,997 - MPMX19_04964 0.32 -0.7 427,997 - MPMX19_04964 0.32 +0.1 427,997 - MPMX19_04964 0.32 -0.1 427,997 - MPMX19_04964 0.32 -1.3 427,997 - MPMX19_04964 0.32 -1.5 428,002 + MPMX19_04964 0.32 -0.4 428,002 + MPMX19_04964 0.32 -0.6 428,014 + MPMX19_04964 0.33 -1.8 428,014 + MPMX19_04964 0.33 -0.3 428,014 + MPMX19_04964 0.33 -1.9 428,014 + MPMX19_04964 0.33 -0.4 428,014 + MPMX19_04964 0.33 -1.0 428,014 + MPMX19_04964 0.33 +0.6 428,014 + MPMX19_04964 0.33 +0.2 428,014 + MPMX19_04964 0.33 -1.2 428,014 + MPMX19_04964 0.33 +0.2 428,014 + MPMX19_04964 0.33 -1.0 428,015 - MPMX19_04964 0.33 -1.2 428,015 - MPMX19_04964 0.33 -1.6 428,015 - MPMX19_04964 0.33 -0.4 428,015 - MPMX19_04964 0.33 -0.0 428,042 + MPMX19_04964 0.35 +0.1 428,042 + MPMX19_04964 0.35 -1.4 428,042 + MPMX19_04964 0.35 -1.4 428,042 + MPMX19_04964 0.35 -1.2 428,042 + MPMX19_04964 0.35 +1.6 428,042 + MPMX19_04964 0.35 +0.1 428,042 + MPMX19_04964 0.35 -0.4 428,042 + MPMX19_04964 0.35 -1.9 428,042 + MPMX19_04964 0.35 -1.5 428,042 + MPMX19_04964 0.35 -0.3 428,042 + MPMX19_04964 0.35 +0.6 428,042 + MPMX19_04964 0.35 -0.5 428,042 + MPMX19_04964 0.35 +0.3 428,042 + MPMX19_04964 0.35 -0.1 428,042 + MPMX19_04964 0.35 -1.0 428,042 + MPMX19_04964 0.35 +0.7 428,042 + MPMX19_04964 0.35 -1.0 428,042 + MPMX19_04964 0.35 +0.2 428,042 + MPMX19_04964 0.35 -0.0 428,042 + MPMX19_04964 0.35 +0.4 428,042 + MPMX19_04964 0.35 +0.6 428,043 - MPMX19_04964 0.35 +0.2 428,043 - MPMX19_04964 0.35 +0.5 428,043 - MPMX19_04964 0.35 -1.3 428,043 - MPMX19_04964 0.35 -1.0 428,043 - MPMX19_04964 0.35 +0.2 428,043 - MPMX19_04964 0.35 +0.1 428,043 - MPMX19_04964 0.35 -0.6 428,043 - MPMX19_04964 0.35 -1.8 428,043 - MPMX19_04964 0.35 -1.2 428,043 - MPMX19_04964 0.35 +0.1 428,043 - MPMX19_04964 0.35 -0.0 428,043 - MPMX19_04964 0.35 +0.4 428,043 - MPMX19_04964 0.35 -1.2 428,043 - MPMX19_04964 0.35 -1.6 428,043 - MPMX19_04964 0.35 -0.7 428,043 - MPMX19_04964 0.35 -1.9 428,043 - MPMX19_04964 0.35 +0.1 428,043 - MPMX19_04964 0.35 +0.0 428,044 + MPMX19_04964 0.35 -0.1 428,044 + MPMX19_04964 0.35 -0.2 428,044 + MPMX19_04964 0.35 +0.5 428,045 - MPMX19_04964 0.35 -1.2 428,045 - MPMX19_04964 0.35 -1.9 428,045 - MPMX19_04964 0.35 -0.2 428,045 - MPMX19_04964 0.35 +0.4 428,045 - MPMX19_04964 0.35 +0.2 428,045 - MPMX19_04964 0.35 -0.4 428,045 - MPMX19_04964 0.35 -1.0 428,045 - MPMX19_04964 0.35 +0.6 428,045 - MPMX19_04964 0.35 -2.0 428,045 - MPMX19_04964 0.35 +0.6 428,263 + MPMX19_04964 0.51 -0.4 428,263 + MPMX19_04964 0.51 +0.6 428,263 + MPMX19_04964 0.51 -1.4 428,263 + MPMX19_04964 0.51 -0.9 428,263 + MPMX19_04964 0.51 -1.8 428,264 - MPMX19_04964 0.51 -1.4 428,264 - MPMX19_04964 0.51 -1.0 428,264 - MPMX19_04964 0.51 +0.2 428,264 - MPMX19_04964 0.51 -0.3 428,264 - MPMX19_04964 0.51 -2.1 428,264 - MPMX19_04964 0.51 -0.8 428,383 + MPMX19_04964 0.60 +1.8 428,383 + MPMX19_04964 0.60 +0.2 428,383 + MPMX19_04964 0.60 -1.3 428,383 + MPMX19_04964 0.60 +0.1 428,383 + MPMX19_04964 0.60 -0.2 428,383 + MPMX19_04964 0.60 -0.0 428,383 + MPMX19_04964 0.60 -0.3 428,383 + MPMX19_04964 0.60 -0.9 428,383 + MPMX19_04964 0.60 -0.3 428,383 + MPMX19_04964 0.60 +0.4 428,383 + MPMX19_04964 0.60 -1.2 428,383 + MPMX19_04964 0.60 +0.9 428,383 + MPMX19_04964 0.60 +0.6 428,384 - MPMX19_04964 0.60 -1.0 428,384 - MPMX19_04964 0.60 +0.2 428,384 - MPMX19_04964 0.60 -0.0 428,384 - MPMX19_04964 0.60 +0.2 428,384 - MPMX19_04964 0.60 +0.5 428,384 - MPMX19_04964 0.60 -1.9 428,384 - MPMX19_04964 0.60 -0.2 428,419 + MPMX19_04964 0.63 +2.2 428,419 + MPMX19_04964 0.63 +0.3 428,419 + MPMX19_04964 0.63 -0.4 428,419 + MPMX19_04964 0.63 -0.0 428,419 + MPMX19_04964 0.63 -1.1 428,419 + MPMX19_04964 0.63 -1.3 428,419 + MPMX19_04964 0.63 -1.8 428,419 + MPMX19_04964 0.63 -0.7 428,420 - MPMX19_04964 0.63 -0.8 428,420 - MPMX19_04964 0.63 -0.3 428,420 - MPMX19_04964 0.63 -2.0
Or see this region's nucleotide sequence