Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04948 and MPMX19_04949 are separated by 146 nucleotides MPMX19_04949 and MPMX19_04950 are separated by 226 nucleotides
MPMX19_04948: MPMX19_04948 - HTH-type transcriptional regulator GltR, at 411,257 to 412,204
_04948
MPMX19_04949: MPMX19_04949 - Leu/Ile/Val-binding protein, at 412,351 to 413,676
_04949
MPMX19_04950: MPMX19_04950 - High-affinity branched-chain amino acid transport system permease protein LivH, at 413,903 to 414,769
_04950
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1 at 411.458 kb on + strand, within MPMX19_04948 at 411.459 kb on - strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 411.704 kb on + strand, within MPMX19_04948 at 412.191 kb on + strand at 412.191 kb on + strand at 412.216 kb on + strand at 412.236 kb on + strand at 412.301 kb on - strand at 412.301 kb on - strand at 412.519 kb on + strand, within MPMX19_04949 at 412.519 kb on + strand, within MPMX19_04949 at 412.766 kb on - strand, within MPMX19_04949 at 413.156 kb on - strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.188 kb on + strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.189 kb on - strand, within MPMX19_04949 at 413.602 kb on + strand at 413.602 kb on + strand at 413.602 kb on + strand at 413.602 kb on + strand at 413.603 kb on - strand at 413.603 kb on - strand at 413.603 kb on - strand at 413.603 kb on - strand at 413.705 kb on + strand at 413.759 kb on + strand at 413.759 kb on + strand at 413.760 kb on - strand at 413.960 kb on + strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 413.961 kb on - strand at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.050 kb on + strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.051 kb on - strand, within MPMX19_04950 at 414.146 kb on + strand, within MPMX19_04950 at 414.147 kb on - strand, within MPMX19_04950
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 411,458 + MPMX19_04948 0.21 +0.3 411,459 - MPMX19_04948 0.21 -0.0 411,704 + MPMX19_04948 0.47 +1.2 411,704 + MPMX19_04948 0.47 -1.6 411,704 + MPMX19_04948 0.47 -0.1 411,704 + MPMX19_04948 0.47 -1.4 411,704 + MPMX19_04948 0.47 -1.2 412,191 + -0.5 412,191 + -1.2 412,216 + +0.2 412,236 + -0.0 412,301 - -1.2 412,301 - -0.0 412,519 + MPMX19_04949 0.13 -0.2 412,519 + MPMX19_04949 0.13 -2.3 412,766 - MPMX19_04949 0.31 -0.4 413,156 - MPMX19_04949 0.61 -0.6 413,188 + MPMX19_04949 0.63 -1.2 413,188 + MPMX19_04949 0.63 -0.4 413,188 + MPMX19_04949 0.63 -0.5 413,188 + MPMX19_04949 0.63 -1.2 413,188 + MPMX19_04949 0.63 -1.2 413,189 - MPMX19_04949 0.63 -0.8 413,189 - MPMX19_04949 0.63 +0.1 413,189 - MPMX19_04949 0.63 -0.5 413,189 - MPMX19_04949 0.63 -1.5 413,189 - MPMX19_04949 0.63 -0.0 413,189 - MPMX19_04949 0.63 +0.2 413,602 + -0.4 413,602 + -0.2 413,602 + +0.8 413,602 + -1.7 413,603 - -0.3 413,603 - -0.9 413,603 - -0.9 413,603 - -1.0 413,705 + -0.5 413,759 + -0.2 413,759 + -1.6 413,760 - -1.6 413,960 + +0.4 413,961 - -1.4 413,961 - -0.4 413,961 - -1.2 413,961 - -1.5 413,961 - -0.8 413,961 - -0.6 414,050 + MPMX19_04950 0.17 -0.4 414,050 + MPMX19_04950 0.17 -0.0 414,050 + MPMX19_04950 0.17 +0.2 414,050 + MPMX19_04950 0.17 -0.8 414,050 + MPMX19_04950 0.17 +1.1 414,050 + MPMX19_04950 0.17 -0.3 414,050 + MPMX19_04950 0.17 -1.5 414,050 + MPMX19_04950 0.17 -0.5 414,050 + MPMX19_04950 0.17 -0.5 414,050 + MPMX19_04950 0.17 +0.4 414,051 - MPMX19_04950 0.17 -0.4 414,051 - MPMX19_04950 0.17 -1.4 414,051 - MPMX19_04950 0.17 -0.4 414,051 - MPMX19_04950 0.17 +0.3 414,051 - MPMX19_04950 0.17 -0.8 414,051 - MPMX19_04950 0.17 -0.0 414,051 - MPMX19_04950 0.17 +0.2 414,051 - MPMX19_04950 0.17 -1.1 414,051 - MPMX19_04950 0.17 -0.8 414,051 - MPMX19_04950 0.17 -0.3 414,051 - MPMX19_04950 0.17 -2.2 414,051 - MPMX19_04950 0.17 +0.5 414,051 - MPMX19_04950 0.17 -0.1 414,051 - MPMX19_04950 0.17 -0.8 414,051 - MPMX19_04950 0.17 +0.6 414,051 - MPMX19_04950 0.17 -1.3 414,146 + MPMX19_04950 0.28 -0.5 414,147 - MPMX19_04950 0.28 -1.4
Or see this region's nucleotide sequence