Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04699

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04697 and MPMX19_04698 are separated by 51 nucleotidesMPMX19_04698 and MPMX19_04699 are separated by 21 nucleotidesMPMX19_04699 and MPMX19_04700 are separated by 235 nucleotides MPMX19_04697: MPMX19_04697 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 81,209 to 84,175 _04697 MPMX19_04698: MPMX19_04698 - hypothetical protein, at 84,227 to 84,724 _04698 MPMX19_04699: MPMX19_04699 - hypothetical protein, at 84,746 to 85,615 _04699 MPMX19_04700: MPMX19_04700 - Adaptive-response sensory-kinase SasA, at 85,851 to 87,530 _04700 Position (kb) 84 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.868 kb on + strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.869 kb on - strand, within MPMX19_04697at 83.871 kb on + strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.872 kb on - strand, within MPMX19_04697at 83.881 kb on - strandat 83.881 kb on - strandat 83.881 kb on - strandat 84.024 kb on + strandat 84.025 kb on - strandat 84.183 kb on + strandat 84.919 kb on - strand, within MPMX19_04699at 84.919 kb on - strand, within MPMX19_04699at 84.919 kb on - strand, within MPMX19_04699at 84.919 kb on - strand, within MPMX19_04699at 85.192 kb on - strand, within MPMX19_04699at 85.192 kb on - strand, within MPMX19_04699at 85.341 kb on + strand, within MPMX19_04699at 85.473 kb on + strand, within MPMX19_04699at 85.474 kb on - strand, within MPMX19_04699at 85.745 kb on + strandat 85.746 kb on - strandat 85.746 kb on - strandat 85.788 kb on - strandat 85.791 kb on - strandat 85.794 kb on - strandat 85.839 kb on + strandat 85.840 kb on - strandat 85.893 kb on + strandat 85.894 kb on - strandat 85.894 kb on - strandat 86.080 kb on + strand, within MPMX19_04700at 86.080 kb on + strand, within MPMX19_04700at 86.081 kb on - strand, within MPMX19_04700at 86.325 kb on + strand, within MPMX19_04700at 86.325 kb on + strand, within MPMX19_04700at 86.326 kb on - strand, within MPMX19_04700at 86.547 kb on + strand, within MPMX19_04700at 86.547 kb on + strand, within MPMX19_04700at 86.548 kb on - strand, within MPMX19_04700

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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83,868 + MPMX19_04697 0.90 -2.1
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 +0.5
83,868 + MPMX19_04697 0.90 -0.5
83,868 + MPMX19_04697 0.90 -0.2
83,868 + MPMX19_04697 0.90 +0.2
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 +0.7
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 -0.1
83,868 + MPMX19_04697 0.90 -0.1
83,868 + MPMX19_04697 0.90 +1.5
83,868 + MPMX19_04697 0.90 +0.3
83,868 + MPMX19_04697 0.90 -0.9
83,868 + MPMX19_04697 0.90 -0.5
83,868 + MPMX19_04697 0.90 +0.1
83,868 + MPMX19_04697 0.90 -3.1
83,868 + MPMX19_04697 0.90 +0.8
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 -0.4
83,868 + MPMX19_04697 0.90 -1.3
83,869 - MPMX19_04697 0.90 -0.9
83,869 - MPMX19_04697 0.90 -0.3
83,869 - MPMX19_04697 0.90 -0.9
83,869 - MPMX19_04697 0.90 +1.3
83,869 - MPMX19_04697 0.90 +0.0
83,869 - MPMX19_04697 0.90 -1.4
83,869 - MPMX19_04697 0.90 -1.9
83,869 - MPMX19_04697 0.90 -0.1
83,869 - MPMX19_04697 0.90 +0.1
83,869 - MPMX19_04697 0.90 -0.2
83,869 - MPMX19_04697 0.90 +0.1
83,869 - MPMX19_04697 0.90 -1.1
83,869 - MPMX19_04697 0.90 -1.1
83,869 - MPMX19_04697 0.90 -0.3
83,869 - MPMX19_04697 0.90 +1.3
83,869 - MPMX19_04697 0.90 -0.7
83,869 - MPMX19_04697 0.90 -0.6
83,869 - MPMX19_04697 0.90 +0.6
83,869 - MPMX19_04697 0.90 -1.8
83,869 - MPMX19_04697 0.90 +0.2
83,869 - MPMX19_04697 0.90 +0.3
83,869 - MPMX19_04697 0.90 -0.6
83,869 - MPMX19_04697 0.90 +1.2
83,869 - MPMX19_04697 0.90 +0.0
83,869 - MPMX19_04697 0.90 +1.1
83,871 + MPMX19_04697 0.90 +0.6
83,872 - MPMX19_04697 0.90 -0.1
83,872 - MPMX19_04697 0.90 +0.5
83,872 - MPMX19_04697 0.90 -0.1
83,872 - MPMX19_04697 0.90 -0.2
83,881 - -0.0
83,881 - -1.9
83,881 - -0.1
84,024 + -0.6
84,025 - -0.4
84,183 + -0.7
84,919 - MPMX19_04699 0.20 -0.1
84,919 - MPMX19_04699 0.20 -0.9
84,919 - MPMX19_04699 0.20 +0.3
84,919 - MPMX19_04699 0.20 -1.9
85,192 - MPMX19_04699 0.51 -1.5
85,192 - MPMX19_04699 0.51 -0.2
85,341 + MPMX19_04699 0.68 -2.9
85,473 + MPMX19_04699 0.84 -0.8
85,474 - MPMX19_04699 0.84 +0.4
85,745 + +0.1
85,746 - +0.5
85,746 - +1.1
85,788 - +0.1
85,791 - -0.3
85,794 - +1.5
85,839 + +0.3
85,840 - -0.5
85,893 + +0.0
85,894 - +1.3
85,894 - -0.4
86,080 + MPMX19_04700 0.14 -0.1
86,080 + MPMX19_04700 0.14 +1.1
86,081 - MPMX19_04700 0.14 -1.1
86,325 + MPMX19_04700 0.28 -0.4
86,325 + MPMX19_04700 0.28 +0.8
86,326 - MPMX19_04700 0.28 -1.3
86,547 + MPMX19_04700 0.41 -1.6
86,547 + MPMX19_04700 0.41 +0.3
86,548 - MPMX19_04700 0.41 +0.3

Or see this region's nucleotide sequence