Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04582 and MPMX19_04583 are separated by 66 nucleotides MPMX19_04583 and MPMX19_04584 are separated by 46 nucleotides MPMX19_04584 and MPMX19_04585 are separated by 15 nucleotides
MPMX19_04582: MPMX19_04582 - hypothetical protein, at 959,935 to 962,364
_04582
MPMX19_04583: MPMX19_04583 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 962,431 to 963,120
_04583
MPMX19_04584: MPMX19_04584 - Lipopolysaccharide export system ATP-binding protein LptB, at 963,167 to 963,913
_04584
MPMX19_04585: MPMX19_04585 - hypothetical protein, at 963,929 to 965,089
_04585
Position (kb) 962
963
964 Strain fitness (log2 ratio) -2
-1
0
1 at 962.226 kb on + strand at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.882 kb on + strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.883 kb on - strand, within MPMX19_04583 at 962.909 kb on + strand, within MPMX19_04583 at 962.909 kb on + strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 962.910 kb on - strand, within MPMX19_04583 at 963.089 kb on + strand at 963.090 kb on - strand at 963.468 kb on + strand, within MPMX19_04584 at 963.469 kb on - strand, within MPMX19_04584 at 963.592 kb on - strand, within MPMX19_04584 at 963.630 kb on + strand, within MPMX19_04584 at 963.630 kb on + strand, within MPMX19_04584 at 963.630 kb on + strand, within MPMX19_04584 at 963.825 kb on + strand, within MPMX19_04584 at 963.826 kb on - strand, within MPMX19_04584 at 963.826 kb on - strand, within MPMX19_04584 at 963.826 kb on - strand, within MPMX19_04584 at 963.895 kb on - strand at 963.895 kb on - strand at 964.026 kb on + strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand at 964.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 962,226 + -0.1 962,882 + MPMX19_04583 0.65 -1.3 962,882 + MPMX19_04583 0.65 -0.9 962,882 + MPMX19_04583 0.65 +0.9 962,882 + MPMX19_04583 0.65 -0.8 962,882 + MPMX19_04583 0.65 -2.1 962,882 + MPMX19_04583 0.65 -0.2 962,882 + MPMX19_04583 0.65 -1.1 962,882 + MPMX19_04583 0.65 +0.7 962,882 + MPMX19_04583 0.65 +1.6 962,882 + MPMX19_04583 0.65 -0.5 962,882 + MPMX19_04583 0.65 -1.8 962,882 + MPMX19_04583 0.65 -1.7 962,882 + MPMX19_04583 0.65 -0.4 962,883 - MPMX19_04583 0.66 +0.0 962,883 - MPMX19_04583 0.66 -0.4 962,883 - MPMX19_04583 0.66 -1.1 962,883 - MPMX19_04583 0.66 +0.0 962,883 - MPMX19_04583 0.66 +0.1 962,883 - MPMX19_04583 0.66 -1.9 962,883 - MPMX19_04583 0.66 -0.7 962,909 + MPMX19_04583 0.69 -0.9 962,909 + MPMX19_04583 0.69 -1.0 962,910 - MPMX19_04583 0.69 +1.4 962,910 - MPMX19_04583 0.69 -1.2 962,910 - MPMX19_04583 0.69 -0.4 962,910 - MPMX19_04583 0.69 -0.0 962,910 - MPMX19_04583 0.69 +0.2 962,910 - MPMX19_04583 0.69 -0.6 963,089 + -1.6 963,090 - -0.7 963,468 + MPMX19_04584 0.40 -1.9 963,469 - MPMX19_04584 0.40 -0.4 963,592 - MPMX19_04584 0.57 -0.2 963,630 + MPMX19_04584 0.62 -0.3 963,630 + MPMX19_04584 0.62 +1.4 963,630 + MPMX19_04584 0.62 -0.2 963,825 + MPMX19_04584 0.88 -1.4 963,826 - MPMX19_04584 0.88 +0.3 963,826 - MPMX19_04584 0.88 +1.0 963,826 - MPMX19_04584 0.88 -0.4 963,895 - -1.2 963,895 - -2.6 964,026 + -1.7 964,027 - -1.3 964,027 - -0.5 964,027 - -0.7 964,027 - -0.1 964,027 - -0.9 964,027 - +0.6
Or see this region's nucleotide sequence