Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04570

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04568 and MPMX19_04569 are separated by 175 nucleotidesMPMX19_04569 and MPMX19_04570 overlap by 4 nucleotidesMPMX19_04570 and MPMX19_04571 are separated by 323 nucleotidesMPMX19_04571 and MPMX19_04572 are separated by 118 nucleotides MPMX19_04568: MPMX19_04568 - hypothetical protein, at 947,663 to 948,064 _04568 MPMX19_04569: MPMX19_04569 - Anti-sigma-F factor NrsF, at 948,240 to 948,875 _04569 MPMX19_04570: MPMX19_04570 - ECF RNA polymerase sigma factor SigF, at 948,872 to 949,429 _04570 MPMX19_04571: MPMX19_04571 - hypothetical protein, at 949,753 to 950,238 _04571 MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010 _04572 Position (kb) 948 949 950Strain fitness (log2 ratio) -2 -1 0 1 2at 947.972 kb on + strand, within MPMX19_04568at 947.993 kb on + strand, within MPMX19_04568at 947.994 kb on - strand, within MPMX19_04568at 948.175 kb on + strandat 948.175 kb on + strandat 948.175 kb on + strandat 948.175 kb on + strandat 948.193 kb on + strandat 948.307 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.355 kb on + strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.356 kb on - strand, within MPMX19_04569at 948.994 kb on + strand, within MPMX19_04570at 949.094 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.165 kb on + strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.166 kb on - strand, within MPMX19_04570at 949.384 kb on + strandat 949.384 kb on + strandat 949.385 kb on - strandat 949.385 kb on - strandat 949.385 kb on - strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.479 kb on + strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.480 kb on - strandat 949.557 kb on - strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.606 kb on + strandat 949.607 kb on - strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.629 kb on + strandat 949.630 kb on - strandat 949.630 kb on - strandat 949.630 kb on - strandat 949.647 kb on + strandat 949.648 kb on - strandat 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.007 kb on + strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571at 950.008 kb on - strand, within MPMX19_04571

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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947,972 + MPMX19_04568 0.77 -1.6
947,993 + MPMX19_04568 0.82 +0.4
947,994 - MPMX19_04568 0.82 +1.4
948,175 + +0.3
948,175 + +0.0
948,175 + +1.2
948,175 + -1.7
948,193 + -1.9
948,307 + MPMX19_04569 0.11 -1.7
948,355 + MPMX19_04569 0.18 -1.6
948,355 + MPMX19_04569 0.18 +0.1
948,355 + MPMX19_04569 0.18 +0.0
948,355 + MPMX19_04569 0.18 -0.9
948,355 + MPMX19_04569 0.18 +0.6
948,355 + MPMX19_04569 0.18 +0.0
948,356 - MPMX19_04569 0.18 -2.5
948,356 - MPMX19_04569 0.18 -1.7
948,356 - MPMX19_04569 0.18 -0.2
948,356 - MPMX19_04569 0.18 -0.5
948,356 - MPMX19_04569 0.18 +0.4
948,356 - MPMX19_04569 0.18 -0.5
948,994 + MPMX19_04570 0.22 +0.0
949,094 + MPMX19_04570 0.40 -0.1
949,165 + MPMX19_04570 0.53 -0.9
949,165 + MPMX19_04570 0.53 +0.9
949,165 + MPMX19_04570 0.53 +1.8
949,165 + MPMX19_04570 0.53 -1.9
949,165 + MPMX19_04570 0.53 -0.1
949,166 - MPMX19_04570 0.53 -0.5
949,166 - MPMX19_04570 0.53 +0.1
949,166 - MPMX19_04570 0.53 -0.1
949,166 - MPMX19_04570 0.53 +1.1
949,166 - MPMX19_04570 0.53 +0.4
949,166 - MPMX19_04570 0.53 +0.3
949,166 - MPMX19_04570 0.53 +1.8
949,166 - MPMX19_04570 0.53 -1.7
949,166 - MPMX19_04570 0.53 -0.5
949,166 - MPMX19_04570 0.53 +1.1
949,166 - MPMX19_04570 0.53 -0.4
949,384 + +1.3
949,384 + +0.1
949,385 - -0.5
949,385 - +0.6
949,385 - -1.2
949,479 + -0.4
949,479 + -1.4
949,479 + +0.0
949,479 + +0.0
949,479 + +0.0
949,479 + -0.3
949,479 + +0.7
949,479 + +2.6
949,479 + +0.5
949,479 + +0.0
949,479 + -1.2
949,480 - -0.7
949,480 - -1.0
949,480 - +0.4
949,480 - -1.4
949,480 - -1.3
949,480 - +0.0
949,480 - +0.2
949,480 - -0.2
949,480 - -0.8
949,480 - +0.3
949,557 - -0.9
949,606 + +0.6
949,606 + +0.7
949,606 + -0.9
949,606 + -0.7
949,606 + -1.4
949,607 - -0.6
949,629 + -0.7
949,629 + +2.2
949,629 + -0.7
949,629 + -0.8
949,630 - -0.7
949,630 - +0.6
949,630 - -0.3
949,647 + -0.5
949,648 - +1.1
950,007 + MPMX19_04571 0.52 +0.8
950,007 + MPMX19_04571 0.52 +1.4
950,007 + MPMX19_04571 0.52 -0.4
950,007 + MPMX19_04571 0.52 -0.1
950,007 + MPMX19_04571 0.52 -1.0
950,008 - MPMX19_04571 0.52 +0.2
950,008 - MPMX19_04571 0.52 -1.0
950,008 - MPMX19_04571 0.52 +0.7

Or see this region's nucleotide sequence