Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04483 and MPMX19_04484 are separated by 105 nucleotides MPMX19_04484 and MPMX19_04485 are separated by 33 nucleotides MPMX19_04485 and MPMX19_04486 are separated by 80 nucleotides MPMX19_04486 and MPMX19_04487 overlap by 14 nucleotides
MPMX19_04483: MPMX19_04483 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 850,803 to 851,837
_04483
MPMX19_04484: MPMX19_04484 - 2-iminobutanoate/2-iminopropanoate deaminase, at 851,943 to 852,287
_04484
MPMX19_04485: MPMX19_04485 - ABC transporter glutamine-binding protein GlnH, at 852,321 to 853,121
_04485
MPMX19_04486: MPMX19_04486 - Glutamine transport ATP-binding protein GlnQ, at 853,202 to 853,930
_04486
MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567
_04487
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.657 kb on - strand, within MPMX19_04483 at 851.657 kb on - strand, within MPMX19_04483 at 851.740 kb on + strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.743 kb on + strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.821 kb on + strand at 851.822 kb on - strand at 851.822 kb on - strand at 851.944 kb on + strand at 851.944 kb on + strand at 851.944 kb on + strand at 851.945 kb on - strand at 851.945 kb on - strand at 851.945 kb on - strand at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.322 kb on + strand at 852.322 kb on + strand at 852.322 kb on + strand at 852.322 kb on + strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.398 kb on - strand at 852.398 kb on - strand at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.575 kb on - strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.734 kb on - strand, within MPMX19_04485 at 852.734 kb on - strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.758 kb on - strand, within MPMX19_04485 at 852.758 kb on - strand, within MPMX19_04485 at 853.527 kb on + strand, within MPMX19_04486 at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.893 kb on + strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.894 kb on - strand at 853.903 kb on + strand at 853.903 kb on + strand at 853.987 kb on + strand, within MPMX19_04487 at 853.987 kb on + strand, within MPMX19_04487 at 853.987 kb on + strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 853.988 kb on - strand, within MPMX19_04487 at 854.008 kb on + strand, within MPMX19_04487 at 854.008 kb on + strand, within MPMX19_04487 at 854.009 kb on - strand, within MPMX19_04487
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 851,656 + MPMX19_04483 0.82 -1.1 851,656 + MPMX19_04483 0.82 +0.4 851,656 + MPMX19_04483 0.82 +0.3 851,656 + MPMX19_04483 0.82 -2.1 851,656 + MPMX19_04483 0.82 -0.2 851,657 - MPMX19_04483 0.83 +0.7 851,657 - MPMX19_04483 0.83 -0.3 851,740 + +0.5 851,741 - -0.9 851,741 - -0.1 851,741 - -0.3 851,741 - +0.5 851,743 + +0.3 851,744 - +0.1 851,744 - -0.6 851,744 - +1.0 851,744 - +0.1 851,821 + -0.8 851,822 - +0.2 851,822 - -1.0 851,944 + +0.1 851,944 + -0.1 851,944 + +0.3 851,945 - -0.9 851,945 - +0.1 851,945 - -1.4 852,049 + MPMX19_04484 0.31 +0.3 852,049 + MPMX19_04484 0.31 +0.0 852,049 + MPMX19_04484 0.31 +1.0 852,049 + MPMX19_04484 0.31 +0.1 852,049 + MPMX19_04484 0.31 +0.3 852,049 + MPMX19_04484 0.31 +0.4 852,049 + MPMX19_04484 0.31 -0.4 852,049 + MPMX19_04484 0.31 +0.6 852,049 + MPMX19_04484 0.31 +0.0 852,049 + MPMX19_04484 0.31 -1.9 852,050 - MPMX19_04484 0.31 +0.3 852,050 - MPMX19_04484 0.31 +0.0 852,050 - MPMX19_04484 0.31 +0.7 852,050 - MPMX19_04484 0.31 -0.5 852,050 - MPMX19_04484 0.31 +1.2 852,050 - MPMX19_04484 0.31 -3.3 852,050 - MPMX19_04484 0.31 +0.3 852,050 - MPMX19_04484 0.31 +0.4 852,050 - MPMX19_04484 0.31 -0.4 852,050 - MPMX19_04484 0.31 +0.2 852,050 - MPMX19_04484 0.31 -0.4 852,322 + -0.6 852,322 + -0.5 852,322 + +0.4 852,322 + -0.7 852,323 - -0.1 852,323 - +0.1 852,323 - -1.6 852,323 - -0.2 852,398 - -0.9 852,398 - -1.6 852,574 + MPMX19_04485 0.32 -1.0 852,574 + MPMX19_04485 0.32 -1.0 852,574 + MPMX19_04485 0.32 -0.5 852,574 + MPMX19_04485 0.32 -0.7 852,575 - MPMX19_04485 0.32 -0.8 852,733 + MPMX19_04485 0.51 -0.4 852,733 + MPMX19_04485 0.51 -1.7 852,733 + MPMX19_04485 0.51 -0.2 852,733 + MPMX19_04485 0.51 -0.2 852,733 + MPMX19_04485 0.51 -0.7 852,734 - MPMX19_04485 0.52 -0.7 852,734 - MPMX19_04485 0.52 -1.1 852,757 + MPMX19_04485 0.54 +0.7 852,757 + MPMX19_04485 0.54 -1.1 852,757 + MPMX19_04485 0.54 +1.0 852,757 + MPMX19_04485 0.54 -0.2 852,757 + MPMX19_04485 0.54 -1.2 852,758 - MPMX19_04485 0.55 +1.3 852,758 - MPMX19_04485 0.55 +0.0 853,527 + MPMX19_04486 0.45 -1.0 853,893 + +1.3 853,893 + -0.2 853,893 + +0.9 853,893 + +0.2 853,893 + +0.9 853,893 + +0.5 853,894 - +1.4 853,894 - -0.0 853,894 - +0.3 853,894 - -0.2 853,894 - +0.3 853,894 - -1.1 853,894 - -0.1 853,894 - -1.0 853,894 - -2.6 853,894 - +0.8 853,903 + +0.1 853,903 + -0.3 853,987 + MPMX19_04487 0.11 +0.0 853,987 + MPMX19_04487 0.11 -0.9 853,987 + MPMX19_04487 0.11 +2.0 853,988 - MPMX19_04487 0.11 -0.7 853,988 - MPMX19_04487 0.11 -1.4 853,988 - MPMX19_04487 0.11 -0.8 853,988 - MPMX19_04487 0.11 -0.7 853,988 - MPMX19_04487 0.11 -0.1 853,988 - MPMX19_04487 0.11 -0.6 853,988 - MPMX19_04487 0.11 +0.3 854,008 + MPMX19_04487 0.14 +0.9 854,008 + MPMX19_04487 0.14 -0.7 854,009 - MPMX19_04487 0.14 -1.2
Or see this region's nucleotide sequence