Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04472 and MPMX19_04473 are separated by 78 nucleotides MPMX19_04473 and MPMX19_04474 are separated by 234 nucleotides MPMX19_04474 and MPMX19_04475 are separated by 228 nucleotides
MPMX19_04472: MPMX19_04472 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing], at 838,655 to 840,481
_04472
MPMX19_04473: MPMX19_04473 - IS481 family transposase ISBxe4, at 840,560 to 841,462
_04473
MPMX19_04474: MPMX19_04474 - hypothetical protein, at 841,697 to 842,059
_04474
MPMX19_04475: MPMX19_04475 - IS701 family transposase ISPye15, at 842,288 to 843,532
_04475
Position (kb) 840
841
842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 840.479 kb on + strand at 840.479 kb on + strand at 840.480 kb on - strand at 840.480 kb on - strand at 840.480 kb on - strand at 840.480 kb on - strand at 840.512 kb on + strand at 840.523 kb on - strand at 840.523 kb on - strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.536 kb on + strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.537 kb on - strand at 840.554 kb on + strand at 840.554 kb on + strand at 840.555 kb on - strand at 840.555 kb on - strand at 840.561 kb on + strand at 840.561 kb on + strand at 840.561 kb on + strand at 840.561 kb on + strand at 840.562 kb on - strand at 840.562 kb on - strand at 840.562 kb on - strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.583 kb on + strand at 840.584 kb on - strand at 840.584 kb on - strand at 840.584 kb on - strand at 840.584 kb on - strand at 840.588 kb on + strand at 840.588 kb on + strand at 840.588 kb on + strand at 840.588 kb on + strand at 840.589 kb on - strand at 840.628 kb on + strand at 840.690 kb on + strand, within MPMX19_04473 at 840.691 kb on - strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.786 kb on + strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.787 kb on - strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.798 kb on + strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.799 kb on - strand, within MPMX19_04473 at 840.810 kb on - strand, within MPMX19_04473 at 840.810 kb on - strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.838 kb on + strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.839 kb on - strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.909 kb on + strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 840.910 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.086 kb on - strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.122 kb on + strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.123 kb on - strand, within MPMX19_04473 at 841.129 kb on - strand, within MPMX19_04473 at 841.129 kb on - strand, within MPMX19_04473 at 841.181 kb on - strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.206 kb on + strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.207 kb on - strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.293 kb on + strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.294 kb on - strand, within MPMX19_04473 at 841.501 kb on + strand at 841.502 kb on - strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.591 kb on + strand at 841.592 kb on - strand at 841.592 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.649 kb on - strand at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.798 kb on + strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.799 kb on - strand, within MPMX19_04474 at 841.825 kb on - strand, within MPMX19_04474 at 841.879 kb on + strand, within MPMX19_04474 at 841.880 kb on - strand, within MPMX19_04474 at 841.964 kb on + strand, within MPMX19_04474 at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.048 kb on + strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.049 kb on - strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.075 kb on + strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.076 kb on - strand at 842.106 kb on + strand at 842.106 kb on + strand at 842.106 kb on + strand at 842.107 kb on - strand at 842.113 kb on + strand at 842.113 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.128 kb on + strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.129 kb on - strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.132 kb on + strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.133 kb on - strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.134 kb on + strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.135 kb on - strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.185 kb on + strand at 842.186 kb on - strand at 842.186 kb on - strand at 842.186 kb on - strand at 842.201 kb on + strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.202 kb on - strand at 842.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 840,479 + +1.0 840,479 + -0.2 840,480 - -0.5 840,480 - -1.2 840,480 - -0.3 840,480 - +0.4 840,512 + -1.7 840,523 - +0.3 840,523 - +0.5 840,536 + -0.6 840,536 + -0.3 840,536 + -1.2 840,536 + +0.2 840,536 + +1.3 840,537 - -2.1 840,537 - -0.7 840,537 - -0.2 840,537 - +0.4 840,537 - -1.4 840,537 - +0.1 840,554 + -1.1 840,554 + +0.2 840,555 - +0.7 840,555 - +0.5 840,561 + -1.5 840,561 + -0.5 840,561 + +0.2 840,561 + -1.2 840,562 - -0.2 840,562 - -2.2 840,562 - -0.6 840,583 + -0.2 840,583 + +0.8 840,583 + -0.1 840,583 + +1.0 840,583 + +0.4 840,583 + +0.7 840,584 - +0.4 840,584 - +1.6 840,584 - -1.4 840,584 - -0.3 840,588 + +1.0 840,588 + -0.8 840,588 + -1.4 840,588 + -0.5 840,589 - +0.4 840,628 + -0.5 840,690 + MPMX19_04473 0.14 -0.1 840,691 - MPMX19_04473 0.15 +1.2 840,786 + MPMX19_04473 0.25 +1.6 840,786 + MPMX19_04473 0.25 +0.2 840,786 + MPMX19_04473 0.25 +0.0 840,787 - MPMX19_04473 0.25 +0.4 840,787 - MPMX19_04473 0.25 -0.8 840,787 - MPMX19_04473 0.25 +0.5 840,787 - MPMX19_04473 0.25 +0.0 840,787 - MPMX19_04473 0.25 -1.7 840,787 - MPMX19_04473 0.25 +0.0 840,787 - MPMX19_04473 0.25 +0.2 840,798 + MPMX19_04473 0.26 +1.4 840,798 + MPMX19_04473 0.26 +0.3 840,798 + MPMX19_04473 0.26 +1.0 840,799 - MPMX19_04473 0.26 -1.5 840,799 - MPMX19_04473 0.26 +0.3 840,799 - MPMX19_04473 0.26 -1.1 840,810 - MPMX19_04473 0.28 -0.7 840,810 - MPMX19_04473 0.28 +0.3 840,838 + MPMX19_04473 0.31 +0.0 840,838 + MPMX19_04473 0.31 +1.6 840,838 + MPMX19_04473 0.31 -0.4 840,838 + MPMX19_04473 0.31 -1.3 840,839 - MPMX19_04473 0.31 +0.6 840,839 - MPMX19_04473 0.31 +0.6 840,839 - MPMX19_04473 0.31 -0.6 840,839 - MPMX19_04473 0.31 -0.1 840,909 + MPMX19_04473 0.39 +1.0 840,909 + MPMX19_04473 0.39 -1.7 840,909 + MPMX19_04473 0.39 -1.4 840,909 + MPMX19_04473 0.39 +0.6 840,909 + MPMX19_04473 0.39 -0.2 840,909 + MPMX19_04473 0.39 +1.0 840,910 - MPMX19_04473 0.39 -0.4 840,910 - MPMX19_04473 0.39 +0.0 840,910 - MPMX19_04473 0.39 -0.1 841,086 - MPMX19_04473 0.58 -1.7 841,086 - MPMX19_04473 0.58 -1.6 841,086 - MPMX19_04473 0.58 +0.0 841,122 + MPMX19_04473 0.62 +0.6 841,122 + MPMX19_04473 0.62 +0.8 841,122 + MPMX19_04473 0.62 +1.1 841,122 + MPMX19_04473 0.62 -1.0 841,122 + MPMX19_04473 0.62 -0.2 841,122 + MPMX19_04473 0.62 -0.3 841,122 + MPMX19_04473 0.62 -2.6 841,122 + MPMX19_04473 0.62 +0.6 841,122 + MPMX19_04473 0.62 +0.5 841,122 + MPMX19_04473 0.62 -0.6 841,123 - MPMX19_04473 0.62 -1.0 841,123 - MPMX19_04473 0.62 +0.6 841,123 - MPMX19_04473 0.62 +0.2 841,123 - MPMX19_04473 0.62 +0.9 841,129 - MPMX19_04473 0.63 -0.8 841,129 - MPMX19_04473 0.63 +1.2 841,181 - MPMX19_04473 0.69 -0.2 841,206 + MPMX19_04473 0.72 +0.3 841,206 + MPMX19_04473 0.72 -1.4 841,206 + MPMX19_04473 0.72 -0.6 841,206 + MPMX19_04473 0.72 -1.4 841,206 + MPMX19_04473 0.72 -2.3 841,206 + MPMX19_04473 0.72 -0.2 841,206 + MPMX19_04473 0.72 +0.1 841,207 - MPMX19_04473 0.72 +0.9 841,207 - MPMX19_04473 0.72 -1.7 841,207 - MPMX19_04473 0.72 +1.4 841,207 - MPMX19_04473 0.72 +0.5 841,293 + MPMX19_04473 0.81 -2.0 841,293 + MPMX19_04473 0.81 +0.0 841,293 + MPMX19_04473 0.81 +3.2 841,293 + MPMX19_04473 0.81 +0.8 841,293 + MPMX19_04473 0.81 +0.0 841,293 + MPMX19_04473 0.81 +0.0 841,293 + MPMX19_04473 0.81 +0.0 841,293 + MPMX19_04473 0.81 +0.4 841,294 - MPMX19_04473 0.81 -1.4 841,294 - MPMX19_04473 0.81 +0.6 841,294 - MPMX19_04473 0.81 +0.3 841,501 + -0.7 841,502 - -0.0 841,591 + -0.7 841,591 + -1.4 841,591 + -1.6 841,591 + +0.0 841,591 + +0.3 841,591 + +0.0 841,592 - -0.7 841,592 - -2.1 841,649 - +1.1 841,649 - -0.2 841,649 - +0.0 841,649 - -1.0 841,798 + MPMX19_04474 0.28 +0.4 841,798 + MPMX19_04474 0.28 +0.1 841,798 + MPMX19_04474 0.28 +0.8 841,798 + MPMX19_04474 0.28 -1.6 841,798 + MPMX19_04474 0.28 +0.3 841,798 + MPMX19_04474 0.28 -0.2 841,798 + MPMX19_04474 0.28 -1.9 841,798 + MPMX19_04474 0.28 -1.9 841,798 + MPMX19_04474 0.28 -0.6 841,799 - MPMX19_04474 0.28 +0.0 841,799 - MPMX19_04474 0.28 -0.5 841,799 - MPMX19_04474 0.28 +0.4 841,799 - MPMX19_04474 0.28 +0.9 841,799 - MPMX19_04474 0.28 +0.0 841,825 - MPMX19_04474 0.35 +0.8 841,879 + MPMX19_04474 0.50 -0.4 841,880 - MPMX19_04474 0.50 +1.2 841,964 + MPMX19_04474 0.74 +1.9 842,048 + -0.1 842,048 + -1.3 842,048 + -2.0 842,048 + +0.1 842,048 + -1.5 842,048 + +0.2 842,048 + -1.0 842,048 + -1.1 842,048 + -1.0 842,049 - -0.7 842,049 - -0.4 842,049 - +0.6 842,049 - +0.2 842,049 - -2.6 842,075 + -1.5 842,075 + +0.0 842,075 + -1.9 842,075 + +0.6 842,075 + -1.0 842,075 + -1.0 842,075 + -1.2 842,075 + -0.3 842,075 + -1.5 842,075 + -0.7 842,075 + -1.2 842,075 + +0.5 842,075 + -0.2 842,075 + -0.3 842,076 - -0.9 842,076 - -0.5 842,076 - -0.3 842,076 - -0.4 842,076 - +0.3 842,076 - -0.9 842,076 - -2.0 842,076 - -1.5 842,076 - -0.3 842,076 - +0.0 842,076 - +0.1 842,076 - +2.1 842,106 + -2.2 842,106 + +0.1 842,106 + +0.1 842,107 - -1.7 842,113 + -0.6 842,113 + -1.4 842,128 + +0.2 842,128 + -0.4 842,128 + -1.6 842,128 + -2.1 842,128 + +0.1 842,128 + +1.3 842,128 + +0.1 842,128 + -2.8 842,128 + +1.0 842,128 + -1.5 842,128 + -0.7 842,128 + -0.5 842,129 - +0.8 842,129 - +0.6 842,129 - -0.7 842,129 - +0.6 842,129 - +0.1 842,129 - +2.2 842,129 - -1.0 842,129 - +0.1 842,129 - -0.2 842,129 - +0.5 842,129 - -0.4 842,129 - -0.2 842,132 + +0.3 842,132 + +0.9 842,132 + +0.3 842,132 + +0.0 842,132 + -0.6 842,132 + +0.0 842,132 + -0.4 842,132 + +0.6 842,132 + +0.1 842,133 - +1.1 842,133 - +0.6 842,133 - -1.0 842,133 - -0.4 842,133 - -0.1 842,133 - -1.3 842,133 - +0.1 842,133 - +0.4 842,133 - +0.5 842,133 - +1.1 842,133 - -1.1 842,133 - -0.6 842,133 - -0.1 842,133 - +0.3 842,133 - -0.1 842,133 - -1.0 842,133 - -0.7 842,134 + +0.1 842,134 + +0.4 842,134 + -0.7 842,134 + -0.9 842,134 + -0.6 842,134 + -1.4 842,135 - -0.6 842,135 - +0.5 842,135 - -0.9 842,135 - -1.6 842,135 - +0.7 842,185 + -2.4 842,185 + -0.5 842,185 + -2.2 842,185 + +0.2 842,186 - -1.0 842,186 - -0.7 842,186 - +0.8 842,201 + +0.7 842,202 - -0.6 842,202 - -0.4 842,202 - -0.7 842,202 - -0.4 842,202 - -0.4 842,380 + -1.7
Or see this region's nucleotide sequence