Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04266 and MPMX19_04267 are separated by 195 nucleotides MPMX19_04267 and MPMX19_04268 are separated by 54 nucleotides MPMX19_04268 and MPMX19_04269 are separated by 340 nucleotides MPMX19_04269 and MPMX19_04270 overlap by 4 nucleotides
MPMX19_04266: MPMX19_04266 - hypothetical protein, at 625,977 to 626,387
_04266
MPMX19_04267: MPMX19_04267 - hypothetical protein, at 626,583 to 627,113
_04267
MPMX19_04268: MPMX19_04268 - 2-keto-3-deoxygluconate permease, at 627,168 to 628,184
_04268
MPMX19_04269: MPMX19_04269 - hypothetical protein, at 628,525 to 628,893
_04269
MPMX19_04270: MPMX19_04270 - hypothetical protein, at 628,890 to 630,413
_04270
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.728 kb on - strand, within MPMX19_04267 at 626.728 kb on - strand, within MPMX19_04267 at 626.728 kb on - strand, within MPMX19_04267 at 627.111 kb on + strand at 627.112 kb on - strand at 627.112 kb on - strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.155 kb on - strand at 627.155 kb on - strand at 627.169 kb on + strand at 627.170 kb on - strand at 627.170 kb on - strand at 627.787 kb on + strand, within MPMX19_04268 at 627.787 kb on + strand, within MPMX19_04268 at 627.787 kb on + strand, within MPMX19_04268 at 627.787 kb on + strand, within MPMX19_04268 at 627.788 kb on - strand, within MPMX19_04268 at 627.788 kb on - strand, within MPMX19_04268 at 627.788 kb on - strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 628.157 kb on + strand at 628.158 kb on - strand at 628.300 kb on + strand at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.074 kb on - strand, within MPMX19_04270
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 626,727 + MPMX19_04267 0.27 -0.2 626,727 + MPMX19_04267 0.27 -2.6 626,727 + MPMX19_04267 0.27 +0.8 626,727 + MPMX19_04267 0.27 +0.5 626,727 + MPMX19_04267 0.27 +1.3 626,727 + MPMX19_04267 0.27 +0.1 626,727 + MPMX19_04267 0.27 +0.2 626,728 - MPMX19_04267 0.27 +0.6 626,728 - MPMX19_04267 0.27 -0.2 626,728 - MPMX19_04267 0.27 +1.8 627,111 + -2.1 627,112 - -0.1 627,112 - -0.7 627,154 + +0.2 627,154 + -1.6 627,154 + +0.2 627,154 + -1.0 627,154 + +1.1 627,155 - +0.2 627,155 - +0.1 627,169 + -0.3 627,170 - -1.8 627,170 - -0.2 627,787 + MPMX19_04268 0.61 +0.6 627,787 + MPMX19_04268 0.61 +0.9 627,787 + MPMX19_04268 0.61 -1.3 627,787 + MPMX19_04268 0.61 -0.4 627,788 - MPMX19_04268 0.61 -1.8 627,788 - MPMX19_04268 0.61 -0.7 627,788 - MPMX19_04268 0.61 -0.4 627,808 + MPMX19_04268 0.63 +0.4 627,808 + MPMX19_04268 0.63 +0.2 627,808 + MPMX19_04268 0.63 -0.1 627,808 + MPMX19_04268 0.63 +0.2 627,808 + MPMX19_04268 0.63 -1.8 627,808 + MPMX19_04268 0.63 -0.8 627,808 + MPMX19_04268 0.63 +0.9 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.6 627,808 + MPMX19_04268 0.63 -0.4 627,808 + MPMX19_04268 0.63 -1.6 627,808 + MPMX19_04268 0.63 +0.9 627,808 + MPMX19_04268 0.63 -1.7 627,808 + MPMX19_04268 0.63 -0.4 627,808 + MPMX19_04268 0.63 +0.2 627,808 + MPMX19_04268 0.63 -0.7 627,808 + MPMX19_04268 0.63 -0.6 627,808 + MPMX19_04268 0.63 -0.7 627,808 + MPMX19_04268 0.63 -1.1 627,808 + MPMX19_04268 0.63 -1.1 627,808 + MPMX19_04268 0.63 +1.3 627,808 + MPMX19_04268 0.63 -1.2 627,808 + MPMX19_04268 0.63 +0.3 627,808 + MPMX19_04268 0.63 +0.0 627,808 + MPMX19_04268 0.63 -2.0 627,808 + MPMX19_04268 0.63 -0.3 627,808 + MPMX19_04268 0.63 +0.5 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.6 627,808 + MPMX19_04268 0.63 -2.0 627,808 + MPMX19_04268 0.63 +0.0 627,808 + MPMX19_04268 0.63 +0.6 627,808 + MPMX19_04268 0.63 -0.9 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.0 627,808 + MPMX19_04268 0.63 -0.7 627,808 + MPMX19_04268 0.63 -0.7 627,808 + MPMX19_04268 0.63 +0.6 627,808 + MPMX19_04268 0.63 +0.3 627,808 + MPMX19_04268 0.63 -1.4 627,809 - MPMX19_04268 0.63 +0.4 627,809 - MPMX19_04268 0.63 -0.3 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -0.2 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 -1.1 627,809 - MPMX19_04268 0.63 -1.1 627,809 - MPMX19_04268 0.63 -1.7 627,809 - MPMX19_04268 0.63 +0.5 627,809 - MPMX19_04268 0.63 -0.6 627,809 - MPMX19_04268 0.63 -1.2 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -0.6 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 +1.5 627,809 - MPMX19_04268 0.63 +0.0 627,809 - MPMX19_04268 0.63 -1.6 627,809 - MPMX19_04268 0.63 +0.1 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 -1.6 627,809 - MPMX19_04268 0.63 +1.2 627,809 - MPMX19_04268 0.63 +0.6 627,809 - MPMX19_04268 0.63 +0.9 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -0.5 627,809 - MPMX19_04268 0.63 -0.5 627,809 - MPMX19_04268 0.63 -0.6 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 +1.4 627,809 - MPMX19_04268 0.63 -1.0 627,809 - MPMX19_04268 0.63 -0.3 627,809 - MPMX19_04268 0.63 +0.4 627,809 - MPMX19_04268 0.63 +1.0 627,809 - MPMX19_04268 0.63 -1.8 627,809 - MPMX19_04268 0.63 -0.2 627,809 - MPMX19_04268 0.63 -0.5 627,809 - MPMX19_04268 0.63 +1.4 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 -2.0 628,157 + +0.2 628,158 - -1.4 628,300 + +0.1 629,073 + MPMX19_04270 0.12 -0.4 629,073 + MPMX19_04270 0.12 -0.4 629,073 + MPMX19_04270 0.12 +0.1 629,073 + MPMX19_04270 0.12 -0.2 629,073 + MPMX19_04270 0.12 -1.7 629,074 - MPMX19_04270 0.12 -0.2
Or see this region's nucleotide sequence