Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03866

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03865 and MPMX19_03866 overlap by 4 nucleotidesMPMX19_03866 and MPMX19_03867 overlap by 4 nucleotides MPMX19_03865: MPMX19_03865 - Arabinose import ATP-binding protein AraG, at 112,066 to 113,607 _03865 MPMX19_03866: MPMX19_03866 - Ribose import permease protein RbsC, at 113,604 to 114,608 _03866 MPMX19_03867: MPMX19_03867 - Ribose import permease protein RbsC, at 114,605 to 115,612 _03867 Position (kb) 113 114 115Strain fitness (log2 ratio) -2 -1 0 1 2at 112.710 kb on + strand, within MPMX19_03865at 112.710 kb on + strand, within MPMX19_03865at 112.710 kb on + strand, within MPMX19_03865at 112.710 kb on + strand, within MPMX19_03865at 112.710 kb on + strand, within MPMX19_03865at 112.711 kb on - strand, within MPMX19_03865at 112.711 kb on - strand, within MPMX19_03865at 113.107 kb on + strand, within MPMX19_03865at 113.107 kb on + strand, within MPMX19_03865at 113.107 kb on + strand, within MPMX19_03865at 113.108 kb on - strand, within MPMX19_03865at 113.108 kb on - strand, within MPMX19_03865at 113.108 kb on - strand, within MPMX19_03865at 113.108 kb on - strand, within MPMX19_03865at 113.108 kb on - strand, within MPMX19_03865at 113.108 kb on - strand, within MPMX19_03865at 114.186 kb on + strand, within MPMX19_03866at 114.187 kb on - strand, within MPMX19_03866at 114.187 kb on - strand, within MPMX19_03866at 114.258 kb on + strand, within MPMX19_03866at 114.258 kb on + strand, within MPMX19_03866at 114.259 kb on - strand, within MPMX19_03866at 115.277 kb on + strand, within MPMX19_03867at 115.278 kb on - strand, within MPMX19_03867

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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112,710 + MPMX19_03865 0.42 -0.6
112,710 + MPMX19_03865 0.42 +0.6
112,710 + MPMX19_03865 0.42 -1.1
112,710 + MPMX19_03865 0.42 -1.2
112,710 + MPMX19_03865 0.42 -0.2
112,711 - MPMX19_03865 0.42 +0.3
112,711 - MPMX19_03865 0.42 +0.8
113,107 + MPMX19_03865 0.68 +0.5
113,107 + MPMX19_03865 0.68 -2.1
113,107 + MPMX19_03865 0.68 -0.2
113,108 - MPMX19_03865 0.68 -0.4
113,108 - MPMX19_03865 0.68 +0.3
113,108 - MPMX19_03865 0.68 +0.3
113,108 - MPMX19_03865 0.68 -0.6
113,108 - MPMX19_03865 0.68 -1.7
113,108 - MPMX19_03865 0.68 -0.3
114,186 + MPMX19_03866 0.58 -0.8
114,187 - MPMX19_03866 0.58 -0.7
114,187 - MPMX19_03866 0.58 +0.9
114,258 + MPMX19_03866 0.65 +2.1
114,258 + MPMX19_03866 0.65 +0.3
114,259 - MPMX19_03866 0.65 +0.6
115,277 + MPMX19_03867 0.67 -0.7
115,278 - MPMX19_03867 0.67 -0.8

Or see this region's nucleotide sequence