Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03767 and MPMX19_03768 are separated by 45 nucleotides MPMX19_03768 and MPMX19_03769 are separated by 284 nucleotides
MPMX19_03767: MPMX19_03767 - Sensor histidine kinase RcsC, at 8,093 to 11,275
_03767
MPMX19_03768: MPMX19_03768 - hypothetical protein, at 11,321 to 12,223
_03768
MPMX19_03769: MPMX19_03769 - hypothetical protein, at 12,508 to 13,458
_03769
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.592 kb on + strand, within MPMX19_03767 at 10.593 kb on - strand, within MPMX19_03767 at 10.593 kb on - strand, within MPMX19_03767 at 10.613 kb on + strand, within MPMX19_03767 at 10.613 kb on + strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 11.166 kb on - strand at 11.166 kb on - strand at 11.288 kb on - strand at 11.322 kb on + strand at 11.361 kb on - strand at 11.492 kb on - strand, within MPMX19_03768 at 11.601 kb on - strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.786 kb on + strand, within MPMX19_03768 at 11.810 kb on - strand, within MPMX19_03768 at 11.870 kb on + strand, within MPMX19_03768 at 12.118 kb on + strand, within MPMX19_03768 at 12.176 kb on + strand at 12.297 kb on - strand at 12.433 kb on + strand at 12.481 kb on - strand at 12.484 kb on + strand at 12.484 kb on + strand at 12.503 kb on - strand at 12.547 kb on + strand at 12.590 kb on + strand at 12.754 kb on - strand, within MPMX19_03769 at 12.754 kb on - strand, within MPMX19_03769 at 12.885 kb on + strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.962 kb on - strand, within MPMX19_03769 at 13.024 kb on - strand, within MPMX19_03769 at 13.030 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.183 kb on + strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 10,592 + MPMX19_03767 0.79 +0.4 10,593 - MPMX19_03767 0.79 -0.2 10,593 - MPMX19_03767 0.79 +0.4 10,613 + MPMX19_03767 0.79 +0.3 10,613 + MPMX19_03767 0.79 -0.1 10,614 - MPMX19_03767 0.79 -1.3 10,614 - MPMX19_03767 0.79 -0.1 10,614 - MPMX19_03767 0.79 -0.7 11,166 - +0.6 11,166 - +0.2 11,288 - +1.5 11,322 + -0.3 11,361 - -1.6 11,492 - MPMX19_03768 0.19 +0.2 11,601 - MPMX19_03768 0.31 -1.2 11,700 + MPMX19_03768 0.42 -0.9 11,700 + MPMX19_03768 0.42 +0.6 11,786 + MPMX19_03768 0.51 -0.9 11,810 - MPMX19_03768 0.54 +0.0 11,870 + MPMX19_03768 0.61 -0.3 12,118 + MPMX19_03768 0.88 -2.0 12,176 + -0.8 12,297 - +0.3 12,433 + -0.7 12,481 - +0.8 12,484 + +1.9 12,484 + +0.9 12,503 - +0.0 12,547 + +1.9 12,590 + +0.6 12,754 - MPMX19_03769 0.26 +0.0 12,754 - MPMX19_03769 0.26 -0.7 12,885 + MPMX19_03769 0.40 -1.2 12,886 - MPMX19_03769 0.40 -1.4 12,886 - MPMX19_03769 0.40 +0.8 12,886 - MPMX19_03769 0.40 +0.1 12,961 + MPMX19_03769 0.48 +0.4 12,961 + MPMX19_03769 0.48 -1.3 12,962 - MPMX19_03769 0.48 +1.6 13,024 - MPMX19_03769 0.54 +1.6 13,030 + MPMX19_03769 0.55 -0.4 13,106 + MPMX19_03769 0.63 -0.4 13,106 + MPMX19_03769 0.63 -1.3 13,106 + MPMX19_03769 0.63 -0.4 13,106 + MPMX19_03769 0.63 -0.6 13,106 + MPMX19_03769 0.63 +0.6 13,136 + MPMX19_03769 0.66 -2.0 13,136 + MPMX19_03769 0.66 +0.5 13,136 + MPMX19_03769 0.66 +1.1 13,136 + MPMX19_03769 0.66 +0.3 13,137 - MPMX19_03769 0.66 -1.6 13,137 - MPMX19_03769 0.66 +0.0 13,137 - MPMX19_03769 0.66 +1.0 13,137 - MPMX19_03769 0.66 -0.4 13,183 + MPMX19_03769 0.71 -0.8 13,184 - MPMX19_03769 0.71 -0.6 13,184 - MPMX19_03769 0.71 -0.1 13,184 - MPMX19_03769 0.71 -0.7
Or see this region's nucleotide sequence