Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03764 and MPMX19_03765 are separated by 114 nucleotides MPMX19_03765 and MPMX19_03766 are separated by 141 nucleotides MPMX19_03766 and MPMX19_03767 are separated by 258 nucleotides
MPMX19_03764: MPMX19_03764 - putative deoxycholate-binding periplasmic protein YgiS, at 3,395 to 4,918
_03764
MPMX19_03765: MPMX19_03765 - hypothetical protein, at 5,033 to 5,674
_03765
MPMX19_03766: MPMX19_03766 - Sensor histidine kinase RcsC, at 5,816 to 7,834
_03766
MPMX19_03767: MPMX19_03767 - Sensor histidine kinase RcsC, at 8,093 to 11,275
_03767
Position (kb)
5
6
7
8 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4.828 kb on - strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 5.017 kb on + strand at 5.018 kb on - strand at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.406 kb on + strand, within MPMX19_03765 at 5.430 kb on + strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.725 kb on - strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.760 kb on + strand at 5.760 kb on + strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.833 kb on + strand at 5.834 kb on - strand at 6.093 kb on + strand, within MPMX19_03766 at 6.093 kb on + strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.094 kb on - strand, within MPMX19_03766 at 6.708 kb on + strand, within MPMX19_03766 at 6.708 kb on + strand, within MPMX19_03766 at 6.709 kb on - strand, within MPMX19_03766 at 6.709 kb on - strand, within MPMX19_03766 at 6.709 kb on - strand, within MPMX19_03766 at 6.831 kb on + strand, within MPMX19_03766 at 6.831 kb on + strand, within MPMX19_03766 at 6.831 kb on + strand, within MPMX19_03766 at 6.832 kb on - strand, within MPMX19_03766 at 6.832 kb on - strand, within MPMX19_03766 at 6.832 kb on - strand, within MPMX19_03766 at 7.886 kb on - strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.919 kb on - strand at 7.919 kb on - strand at 7.951 kb on - strand at 7.951 kb on - strand at 7.951 kb on - strand at 7.953 kb on + strand at 7.953 kb on + strand at 7.953 kb on + strand at 7.954 kb on - strand at 7.957 kb on - strand at 7.971 kb on + strand at 7.971 kb on + strand at 8.003 kb on + strand at 8.004 kb on - strand at 8.004 kb on - strand at 8.072 kb on + strand at 8.159 kb on + strand at 8.160 kb on - strand at 8.262 kb on - strand at 8.419 kb on + strand, within MPMX19_03767 at 8.420 kb on - strand, within MPMX19_03767
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 4,828 - +1.3 4,847 + +0.5 4,847 + -2.6 4,847 + +0.4 4,847 + -1.4 4,847 + +1.2 4,847 + -0.5 4,847 + -1.6 4,847 + +1.2 4,847 + +0.4 4,847 + +0.3 4,847 + -0.5 4,848 - -1.0 4,848 - +0.1 4,848 - -0.2 4,848 - -0.9 4,848 - -1.1 4,848 - -1.0 4,848 - -1.0 4,848 - -0.9 5,017 + -0.7 5,018 - -0.6 5,397 + MPMX19_03765 0.57 -1.7 5,397 + MPMX19_03765 0.57 -1.4 5,397 + MPMX19_03765 0.57 +0.8 5,397 + MPMX19_03765 0.57 -2.0 5,397 + MPMX19_03765 0.57 -1.1 5,397 + MPMX19_03765 0.57 -2.0 5,398 - MPMX19_03765 0.57 -1.6 5,398 - MPMX19_03765 0.57 -2.2 5,398 - MPMX19_03765 0.57 -0.2 5,406 + MPMX19_03765 0.58 -1.3 5,430 + MPMX19_03765 0.62 +0.5 5,431 - MPMX19_03765 0.62 -1.2 5,431 - MPMX19_03765 0.62 +0.1 5,607 + MPMX19_03765 0.89 -0.8 5,607 + MPMX19_03765 0.89 -1.3 5,607 + MPMX19_03765 0.89 +0.8 5,607 + MPMX19_03765 0.89 -0.1 5,608 - MPMX19_03765 0.90 -1.6 5,608 - MPMX19_03765 0.90 -1.4 5,725 - -0.1 5,755 + -1.3 5,755 + -0.7 5,755 + -1.0 5,755 + -2.1 5,755 + +0.6 5,755 + -0.7 5,755 + -0.4 5,756 - -1.7 5,756 - -1.4 5,756 - -1.4 5,756 - -1.0 5,756 - +0.0 5,756 - -0.2 5,756 - +0.1 5,756 - +0.6 5,756 - +0.1 5,756 - -1.6 5,756 - +0.8 5,760 + +0.8 5,760 + +1.8 5,761 - +0.7 5,761 - +0.6 5,761 - -0.4 5,769 - -0.3 5,769 - -0.8 5,769 - +0.0 5,769 - -0.2 5,791 - -0.1 5,791 - +0.9 5,791 - +1.2 5,833 + +0.6 5,834 - -1.6 6,093 + MPMX19_03766 0.14 -2.2 6,093 + MPMX19_03766 0.14 -1.7 6,094 - MPMX19_03766 0.14 -0.7 6,094 - MPMX19_03766 0.14 +0.0 6,094 - MPMX19_03766 0.14 +0.9 6,094 - MPMX19_03766 0.14 +1.6 6,094 - MPMX19_03766 0.14 -1.4 6,094 - MPMX19_03766 0.14 -1.4 6,708 + MPMX19_03766 0.44 -0.2 6,708 + MPMX19_03766 0.44 -0.3 6,709 - MPMX19_03766 0.44 -1.3 6,709 - MPMX19_03766 0.44 -1.1 6,709 - MPMX19_03766 0.44 +0.4 6,831 + MPMX19_03766 0.50 -1.2 6,831 + MPMX19_03766 0.50 -2.2 6,831 + MPMX19_03766 0.50 -0.1 6,832 - MPMX19_03766 0.50 -2.0 6,832 - MPMX19_03766 0.50 -1.2 6,832 - MPMX19_03766 0.50 +0.6 7,886 - +1.3 7,918 + -0.5 7,918 + +0.4 7,918 + -0.2 7,918 + -0.6 7,919 - -1.1 7,919 - -1.4 7,951 - -0.1 7,951 - +0.3 7,951 - -0.1 7,953 + -0.7 7,953 + -0.9 7,953 + -1.9 7,954 - -0.7 7,957 - -1.1 7,971 + -0.7 7,971 + +0.8 8,003 + +0.9 8,004 - +0.2 8,004 - -1.4 8,072 + +0.3 8,159 + -0.7 8,160 - -2.3 8,262 - -1.4 8,419 + MPMX19_03767 0.10 -0.1 8,420 - MPMX19_03767 0.10 -0.4
Or see this region's nucleotide sequence