Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03766

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03764 and MPMX19_03765 are separated by 114 nucleotidesMPMX19_03765 and MPMX19_03766 are separated by 141 nucleotidesMPMX19_03766 and MPMX19_03767 are separated by 258 nucleotides MPMX19_03764: MPMX19_03764 - putative deoxycholate-binding periplasmic protein YgiS, at 3,395 to 4,918 _03764 MPMX19_03765: MPMX19_03765 - hypothetical protein, at 5,033 to 5,674 _03765 MPMX19_03766: MPMX19_03766 - Sensor histidine kinase RcsC, at 5,816 to 7,834 _03766 MPMX19_03767: MPMX19_03767 - Sensor histidine kinase RcsC, at 8,093 to 11,275 _03767 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 4.828 kb on - strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.847 kb on + strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.848 kb on - strandat 4.848 kb on - strandat 5.017 kb on + strandat 5.018 kb on - strandat 5.397 kb on + strand, within MPMX19_03765at 5.397 kb on + strand, within MPMX19_03765at 5.397 kb on + strand, within MPMX19_03765at 5.397 kb on + strand, within MPMX19_03765at 5.397 kb on + strand, within MPMX19_03765at 5.397 kb on + strand, within MPMX19_03765at 5.398 kb on - strand, within MPMX19_03765at 5.398 kb on - strand, within MPMX19_03765at 5.398 kb on - strand, within MPMX19_03765at 5.406 kb on + strand, within MPMX19_03765at 5.430 kb on + strand, within MPMX19_03765at 5.431 kb on - strand, within MPMX19_03765at 5.431 kb on - strand, within MPMX19_03765at 5.607 kb on + strand, within MPMX19_03765at 5.607 kb on + strand, within MPMX19_03765at 5.607 kb on + strand, within MPMX19_03765at 5.607 kb on + strand, within MPMX19_03765at 5.608 kb on - strand, within MPMX19_03765at 5.608 kb on - strand, within MPMX19_03765at 5.725 kb on - strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.756 kb on - strandat 5.760 kb on + strandat 5.760 kb on + strandat 5.761 kb on - strandat 5.761 kb on - strandat 5.761 kb on - strandat 5.769 kb on - strandat 5.769 kb on - strandat 5.769 kb on - strandat 5.769 kb on - strandat 5.791 kb on - strandat 5.791 kb on - strandat 5.791 kb on - strandat 5.833 kb on + strandat 5.834 kb on - strandat 6.093 kb on + strand, within MPMX19_03766at 6.093 kb on + strand, within MPMX19_03766at 6.094 kb on - strand, within MPMX19_03766at 6.094 kb on - strand, within MPMX19_03766at 6.094 kb on - strand, within MPMX19_03766at 6.094 kb on - strand, within MPMX19_03766at 6.094 kb on - strand, within MPMX19_03766at 6.094 kb on - strand, within MPMX19_03766at 6.708 kb on + strand, within MPMX19_03766at 6.708 kb on + strand, within MPMX19_03766at 6.709 kb on - strand, within MPMX19_03766at 6.709 kb on - strand, within MPMX19_03766at 6.709 kb on - strand, within MPMX19_03766at 6.831 kb on + strand, within MPMX19_03766at 6.831 kb on + strand, within MPMX19_03766at 6.831 kb on + strand, within MPMX19_03766at 6.832 kb on - strand, within MPMX19_03766at 6.832 kb on - strand, within MPMX19_03766at 6.832 kb on - strand, within MPMX19_03766at 7.886 kb on - strandat 7.918 kb on + strandat 7.918 kb on + strandat 7.918 kb on + strandat 7.918 kb on + strandat 7.919 kb on - strandat 7.919 kb on - strandat 7.951 kb on - strandat 7.951 kb on - strandat 7.951 kb on - strandat 7.953 kb on + strandat 7.953 kb on + strandat 7.953 kb on + strandat 7.954 kb on - strandat 7.957 kb on - strandat 7.971 kb on + strandat 7.971 kb on + strandat 8.003 kb on + strandat 8.004 kb on - strandat 8.004 kb on - strandat 8.072 kb on + strandat 8.159 kb on + strandat 8.160 kb on - strandat 8.262 kb on - strandat 8.419 kb on + strand, within MPMX19_03767at 8.420 kb on - strand, within MPMX19_03767

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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4,828 - +1.3
4,847 + +0.5
4,847 + -2.6
4,847 + +0.4
4,847 + -1.4
4,847 + +1.2
4,847 + -0.5
4,847 + -1.6
4,847 + +1.2
4,847 + +0.4
4,847 + +0.3
4,847 + -0.5
4,848 - -1.0
4,848 - +0.1
4,848 - -0.2
4,848 - -0.9
4,848 - -1.1
4,848 - -1.0
4,848 - -1.0
4,848 - -0.9
5,017 + -0.7
5,018 - -0.6
5,397 + MPMX19_03765 0.57 -1.7
5,397 + MPMX19_03765 0.57 -1.4
5,397 + MPMX19_03765 0.57 +0.8
5,397 + MPMX19_03765 0.57 -2.0
5,397 + MPMX19_03765 0.57 -1.1
5,397 + MPMX19_03765 0.57 -2.0
5,398 - MPMX19_03765 0.57 -1.6
5,398 - MPMX19_03765 0.57 -2.2
5,398 - MPMX19_03765 0.57 -0.2
5,406 + MPMX19_03765 0.58 -1.3
5,430 + MPMX19_03765 0.62 +0.5
5,431 - MPMX19_03765 0.62 -1.2
5,431 - MPMX19_03765 0.62 +0.1
5,607 + MPMX19_03765 0.89 -0.8
5,607 + MPMX19_03765 0.89 -1.3
5,607 + MPMX19_03765 0.89 +0.8
5,607 + MPMX19_03765 0.89 -0.1
5,608 - MPMX19_03765 0.90 -1.6
5,608 - MPMX19_03765 0.90 -1.4
5,725 - -0.1
5,755 + -1.3
5,755 + -0.7
5,755 + -1.0
5,755 + -2.1
5,755 + +0.6
5,755 + -0.7
5,755 + -0.4
5,756 - -1.7
5,756 - -1.4
5,756 - -1.4
5,756 - -1.0
5,756 - +0.0
5,756 - -0.2
5,756 - +0.1
5,756 - +0.6
5,756 - +0.1
5,756 - -1.6
5,756 - +0.8
5,760 + +0.8
5,760 + +1.8
5,761 - +0.7
5,761 - +0.6
5,761 - -0.4
5,769 - -0.3
5,769 - -0.8
5,769 - +0.0
5,769 - -0.2
5,791 - -0.1
5,791 - +0.9
5,791 - +1.2
5,833 + +0.6
5,834 - -1.6
6,093 + MPMX19_03766 0.14 -2.2
6,093 + MPMX19_03766 0.14 -1.7
6,094 - MPMX19_03766 0.14 -0.7
6,094 - MPMX19_03766 0.14 +0.0
6,094 - MPMX19_03766 0.14 +0.9
6,094 - MPMX19_03766 0.14 +1.6
6,094 - MPMX19_03766 0.14 -1.4
6,094 - MPMX19_03766 0.14 -1.4
6,708 + MPMX19_03766 0.44 -0.2
6,708 + MPMX19_03766 0.44 -0.3
6,709 - MPMX19_03766 0.44 -1.3
6,709 - MPMX19_03766 0.44 -1.1
6,709 - MPMX19_03766 0.44 +0.4
6,831 + MPMX19_03766 0.50 -1.2
6,831 + MPMX19_03766 0.50 -2.2
6,831 + MPMX19_03766 0.50 -0.1
6,832 - MPMX19_03766 0.50 -2.0
6,832 - MPMX19_03766 0.50 -1.2
6,832 - MPMX19_03766 0.50 +0.6
7,886 - +1.3
7,918 + -0.5
7,918 + +0.4
7,918 + -0.2
7,918 + -0.6
7,919 - -1.1
7,919 - -1.4
7,951 - -0.1
7,951 - +0.3
7,951 - -0.1
7,953 + -0.7
7,953 + -0.9
7,953 + -1.9
7,954 - -0.7
7,957 - -1.1
7,971 + -0.7
7,971 + +0.8
8,003 + +0.9
8,004 - +0.2
8,004 - -1.4
8,072 + +0.3
8,159 + -0.7
8,160 - -2.3
8,262 - -1.4
8,419 + MPMX19_03767 0.10 -0.1
8,420 - MPMX19_03767 0.10 -0.4

Or see this region's nucleotide sequence