Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03270 and MPMX19_03271 overlap by 4 nucleotides MPMX19_03271 and MPMX19_03272 are separated by 14 nucleotides
MPMX19_03270: MPMX19_03270 - Lactose transport system permease protein LacF, at 614,261 to 615,292
_03270
MPMX19_03271: MPMX19_03271 - hypothetical protein, at 615,289 to 616,344
_03271
MPMX19_03272: MPMX19_03272 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 616,359 to 617,402
_03272
Position (kb) 615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.549 kb on + strand, within MPMX19_03270 at 614.549 kb on + strand, within MPMX19_03270 at 614.550 kb on - strand, within MPMX19_03270 at 614.550 kb on - strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.738 kb on + strand, within MPMX19_03270 at 614.738 kb on + strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.972 kb on + strand, within MPMX19_03270 at 614.972 kb on + strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.159 kb on - strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.370 kb on + strand at 615.370 kb on + strand at 615.370 kb on + strand at 615.371 kb on - strand at 615.371 kb on - strand at 615.371 kb on - strand at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.692 kb on - strand, within MPMX19_03271 at 615.692 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.815 kb on - strand, within MPMX19_03271 at 615.898 kb on + strand, within MPMX19_03271 at 615.899 kb on - strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.240 kb on + strand at 616.240 kb on + strand at 616.240 kb on + strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.395 kb on + strand at 616.395 kb on + strand at 616.395 kb on + strand at 616.395 kb on + strand at 616.395 kb on + strand at 616.396 kb on - strand at 616.396 kb on - strand at 616.396 kb on - strand at 616.396 kb on - strand at 616.608 kb on + strand, within MPMX19_03272 at 616.608 kb on + strand, within MPMX19_03272 at 616.608 kb on + strand, within MPMX19_03272 at 616.608 kb on + strand, within MPMX19_03272 at 616.609 kb on - strand, within MPMX19_03272 at 616.609 kb on - strand, within MPMX19_03272 at 616.617 kb on + strand, within MPMX19_03272 at 616.618 kb on - strand, within MPMX19_03272 at 616.734 kb on + strand, within MPMX19_03272 at 616.734 kb on + strand, within MPMX19_03272 at 616.734 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.923 kb on + strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 616.924 kb on - strand, within MPMX19_03272 at 617.022 kb on + strand, within MPMX19_03272 at 617.022 kb on + strand, within MPMX19_03272 at 617.022 kb on + strand, within MPMX19_03272 at 617.022 kb on + strand, within MPMX19_03272 at 617.022 kb on + strand, within MPMX19_03272 at 617.023 kb on - strand, within MPMX19_03272 at 617.232 kb on + strand, within MPMX19_03272 at 617.233 kb on - strand, within MPMX19_03272 at 617.233 kb on - strand, within MPMX19_03272
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 614,414 + MPMX19_03270 0.15 +0.4 614,414 + MPMX19_03270 0.15 -0.2 614,414 + MPMX19_03270 0.15 -1.6 614,414 + MPMX19_03270 0.15 +0.1 614,415 - MPMX19_03270 0.15 +1.2 614,415 - MPMX19_03270 0.15 -0.5 614,415 - MPMX19_03270 0.15 -2.2 614,415 - MPMX19_03270 0.15 -0.6 614,531 + MPMX19_03270 0.26 -0.6 614,531 + MPMX19_03270 0.26 -0.8 614,531 + MPMX19_03270 0.26 -0.7 614,532 - MPMX19_03270 0.26 -0.2 614,532 - MPMX19_03270 0.26 -0.3 614,532 - MPMX19_03270 0.26 -0.3 614,532 - MPMX19_03270 0.26 -0.5 614,532 - MPMX19_03270 0.26 -0.5 614,549 + MPMX19_03270 0.28 -1.7 614,549 + MPMX19_03270 0.28 -0.0 614,550 - MPMX19_03270 0.28 -0.3 614,550 - MPMX19_03270 0.28 -1.7 614,576 + MPMX19_03270 0.31 -0.0 614,576 + MPMX19_03270 0.31 -1.8 614,576 + MPMX19_03270 0.31 -0.8 614,576 + MPMX19_03270 0.31 +0.7 614,576 + MPMX19_03270 0.31 -2.0 614,577 - MPMX19_03270 0.31 -1.5 614,577 - MPMX19_03270 0.31 +1.1 614,577 - MPMX19_03270 0.31 +0.5 614,577 - MPMX19_03270 0.31 -0.6 614,738 + MPMX19_03270 0.46 -0.5 614,738 + MPMX19_03270 0.46 -0.0 614,739 - MPMX19_03270 0.46 -0.8 614,739 - MPMX19_03270 0.46 -0.2 614,739 - MPMX19_03270 0.46 -1.4 614,739 - MPMX19_03270 0.46 +0.6 614,924 + MPMX19_03270 0.64 -0.8 614,924 + MPMX19_03270 0.64 -0.2 614,924 + MPMX19_03270 0.64 -0.8 614,924 + MPMX19_03270 0.64 -0.8 614,924 + MPMX19_03270 0.64 +0.8 614,925 - MPMX19_03270 0.64 -0.3 614,925 - MPMX19_03270 0.64 +0.4 614,925 - MPMX19_03270 0.64 +0.4 614,972 + MPMX19_03270 0.69 -1.5 614,972 + MPMX19_03270 0.69 +0.9 614,973 - MPMX19_03270 0.69 +0.2 614,973 - MPMX19_03270 0.69 -0.3 614,973 - MPMX19_03270 0.69 +1.1 614,973 - MPMX19_03270 0.69 +1.1 614,973 - MPMX19_03270 0.69 -0.0 615,158 + MPMX19_03270 0.87 -1.7 615,158 + MPMX19_03270 0.87 -1.0 615,158 + MPMX19_03270 0.87 -0.7 615,158 + MPMX19_03270 0.87 -0.5 615,158 + MPMX19_03270 0.87 +0.5 615,158 + MPMX19_03270 0.87 -0.5 615,158 + MPMX19_03270 0.87 -2.0 615,158 + MPMX19_03270 0.87 -1.2 615,158 + MPMX19_03270 0.87 -0.2 615,159 - MPMX19_03270 0.87 -0.2 615,164 + MPMX19_03270 0.88 -0.5 615,164 + MPMX19_03270 0.88 +0.1 615,164 + MPMX19_03270 0.88 -0.0 615,164 + MPMX19_03270 0.88 -1.5 615,164 + MPMX19_03270 0.88 +1.2 615,164 + MPMX19_03270 0.88 -0.4 615,164 + MPMX19_03270 0.88 -0.2 615,164 + MPMX19_03270 0.88 -1.0 615,164 + MPMX19_03270 0.88 +0.1 615,164 + MPMX19_03270 0.88 +0.2 615,164 + MPMX19_03270 0.88 -0.6 615,164 + MPMX19_03270 0.88 -0.9 615,164 + MPMX19_03270 0.88 -0.3 615,164 + MPMX19_03270 0.88 -2.0 615,164 + MPMX19_03270 0.88 -0.1 615,165 - MPMX19_03270 0.88 +1.8 615,165 - MPMX19_03270 0.88 +0.5 615,165 - MPMX19_03270 0.88 -0.5 615,165 - MPMX19_03270 0.88 +0.3 615,165 - MPMX19_03270 0.88 +0.1 615,165 - MPMX19_03270 0.88 +1.8 615,165 - MPMX19_03270 0.88 +0.1 615,165 - MPMX19_03270 0.88 -1.1 615,364 + -0.6 615,364 + -0.3 615,364 + -0.3 615,364 + -1.2 615,364 + +0.1 615,364 + -1.6 615,364 + -0.5 615,364 + -0.1 615,364 + -0.0 615,364 + -1.6 615,364 + +0.9 615,364 + +0.8 615,364 + -2.8 615,364 + -0.5 615,365 - -1.9 615,365 - -1.9 615,365 - +0.2 615,365 - -0.3 615,365 - -0.4 615,365 - +0.2 615,365 - +0.2 615,365 - -0.5 615,365 - -1.0 615,365 - +1.1 615,365 - -0.0 615,365 - -0.0 615,365 - +2.0 615,365 - -1.0 615,365 - -2.9 615,365 - -0.8 615,365 - -0.3 615,365 - +0.4 615,365 - +0.3 615,370 + +0.3 615,370 + +0.4 615,370 + -0.9 615,371 - -1.5 615,371 - +1.0 615,371 - -0.3 615,691 + MPMX19_03271 0.38 -1.7 615,691 + MPMX19_03271 0.38 -1.8 615,691 + MPMX19_03271 0.38 -0.8 615,691 + MPMX19_03271 0.38 -0.6 615,691 + MPMX19_03271 0.38 -0.3 615,691 + MPMX19_03271 0.38 -0.8 615,692 - MPMX19_03271 0.38 -0.8 615,692 - MPMX19_03271 0.38 -0.3 615,800 - MPMX19_03271 0.48 -2.3 615,800 - MPMX19_03271 0.48 -1.3 615,800 - MPMX19_03271 0.48 -0.9 615,800 - MPMX19_03271 0.48 -1.5 615,800 - MPMX19_03271 0.48 -1.1 615,815 - MPMX19_03271 0.50 -1.0 615,898 + MPMX19_03271 0.58 -2.2 615,899 - MPMX19_03271 0.58 -0.2 615,994 + MPMX19_03271 0.67 -0.5 615,994 + MPMX19_03271 0.67 -0.8 615,994 + MPMX19_03271 0.67 -0.5 615,994 + MPMX19_03271 0.67 +0.3 615,994 + MPMX19_03271 0.67 -0.5 615,994 + MPMX19_03271 0.67 +0.1 615,995 - MPMX19_03271 0.67 -0.1 615,995 - MPMX19_03271 0.67 -0.8 615,995 - MPMX19_03271 0.67 -0.6 616,063 + MPMX19_03271 0.73 -0.9 616,063 + MPMX19_03271 0.73 -2.5 616,063 + MPMX19_03271 0.73 +1.0 616,064 - MPMX19_03271 0.73 -0.0 616,064 - MPMX19_03271 0.73 -0.4 616,064 - MPMX19_03271 0.73 -0.3 616,064 - MPMX19_03271 0.73 -1.4 616,064 - MPMX19_03271 0.73 -0.2 616,064 - MPMX19_03271 0.73 -2.1 616,240 + -0.8 616,240 + +0.9 616,240 + -0.0 616,241 - -1.5 616,241 - -0.3 616,241 - -1.3 616,241 - -0.8 616,241 - -0.5 616,241 - -0.9 616,241 - -0.6 616,241 - -0.3 616,356 + +1.0 616,356 + -0.2 616,356 + +1.5 616,356 + +0.1 616,395 + +0.2 616,395 + -0.8 616,395 + -0.3 616,395 + +0.4 616,395 + -0.5 616,396 - -2.3 616,396 - -0.1 616,396 - -0.4 616,396 - -1.2 616,608 + MPMX19_03272 0.24 +0.2 616,608 + MPMX19_03272 0.24 +0.3 616,608 + MPMX19_03272 0.24 -1.3 616,608 + MPMX19_03272 0.24 -0.3 616,609 - MPMX19_03272 0.24 -1.1 616,609 - MPMX19_03272 0.24 +1.1 616,617 + MPMX19_03272 0.25 -0.8 616,618 - MPMX19_03272 0.25 -0.3 616,734 + MPMX19_03272 0.36 -0.7 616,734 + MPMX19_03272 0.36 +0.5 616,734 + MPMX19_03272 0.36 -0.3 616,923 + MPMX19_03272 0.54 -0.0 616,923 + MPMX19_03272 0.54 -0.9 616,923 + MPMX19_03272 0.54 +0.3 616,923 + MPMX19_03272 0.54 +0.0 616,923 + MPMX19_03272 0.54 -0.6 616,923 + MPMX19_03272 0.54 -0.3 616,923 + MPMX19_03272 0.54 -0.9 616,923 + MPMX19_03272 0.54 +1.8 616,923 + MPMX19_03272 0.54 -0.5 616,923 + MPMX19_03272 0.54 +1.3 616,923 + MPMX19_03272 0.54 -0.4 616,923 + MPMX19_03272 0.54 -0.8 616,923 + MPMX19_03272 0.54 -0.3 616,923 + MPMX19_03272 0.54 -0.2 616,923 + MPMX19_03272 0.54 -1.2 616,924 - MPMX19_03272 0.54 -0.8 616,924 - MPMX19_03272 0.54 -0.1 616,924 - MPMX19_03272 0.54 -1.5 616,924 - MPMX19_03272 0.54 -0.8 616,924 - MPMX19_03272 0.54 -0.8 616,924 - MPMX19_03272 0.54 -0.4 616,924 - MPMX19_03272 0.54 -0.5 616,924 - MPMX19_03272 0.54 -0.7 616,924 - MPMX19_03272 0.54 +0.1 616,924 - MPMX19_03272 0.54 -0.8 616,924 - MPMX19_03272 0.54 -1.1 617,022 + MPMX19_03272 0.64 -0.3 617,022 + MPMX19_03272 0.64 +0.0 617,022 + MPMX19_03272 0.64 +0.2 617,022 + MPMX19_03272 0.64 -1.0 617,022 + MPMX19_03272 0.64 +0.5 617,023 - MPMX19_03272 0.64 -1.0 617,232 + MPMX19_03272 0.84 -0.1 617,233 - MPMX19_03272 0.84 -0.9 617,233 - MPMX19_03272 0.84 -0.5
Or see this region's nucleotide sequence