Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02811

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02810 and MPMX19_02811 are separated by 11 nucleotidesMPMX19_02811 and MPMX19_02812 are separated by 45 nucleotides MPMX19_02810: MPMX19_02810 - D-threonate 4-phosphate dehydrogenase, at 46,045 to 47,079 _02810 MPMX19_02811: MPMX19_02811 - Long-chain-alcohol dehydrogenase 1, at 47,091 to 48,227 _02811 MPMX19_02812: MPMX19_02812 - 4-hydroxy-tetrahydrodipicolinate synthase, at 48,273 to 49,172 _02812 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.340 kb on - strand, within MPMX19_02810at 46.439 kb on - strand, within MPMX19_02810at 46.594 kb on + strand, within MPMX19_02810at 46.594 kb on + strand, within MPMX19_02810at 46.595 kb on - strand, within MPMX19_02810at 46.595 kb on - strand, within MPMX19_02810at 46.816 kb on + strand, within MPMX19_02810at 46.816 kb on + strand, within MPMX19_02810at 46.817 kb on - strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.694 kb on + strand, within MPMX19_02811at 47.694 kb on + strand, within MPMX19_02811at 47.695 kb on - strand, within MPMX19_02811at 47.695 kb on - strand, within MPMX19_02811at 47.730 kb on + strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.833 kb on - strand, within MPMX19_02811at 48.210 kb on + strandat 48.210 kb on + strandat 48.210 kb on + strandat 48.211 kb on - strandat 48.211 kb on - strandat 48.211 kb on - strandat 48.211 kb on - strandat 48.643 kb on - strand, within MPMX19_02812at 48.678 kb on + strand, within MPMX19_02812at 48.679 kb on - strand, within MPMX19_02812at 48.679 kb on - strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 49.023 kb on + strand, within MPMX19_02812at 49.023 kb on + strand, within MPMX19_02812at 49.023 kb on + strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.155 kb on + strandat 49.155 kb on + strandat 49.156 kb on - strandat 49.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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46,340 - MPMX19_02810 0.29 +0.1
46,439 - MPMX19_02810 0.38 -0.9
46,594 + MPMX19_02810 0.53 -0.6
46,594 + MPMX19_02810 0.53 +1.0
46,595 - MPMX19_02810 0.53 -1.9
46,595 - MPMX19_02810 0.53 -0.4
46,816 + MPMX19_02810 0.74 +0.4
46,816 + MPMX19_02810 0.74 -0.4
46,817 - MPMX19_02810 0.75 -0.2
46,837 + MPMX19_02810 0.77 -0.3
46,837 + MPMX19_02810 0.77 -1.2
46,837 + MPMX19_02810 0.77 +0.3
46,837 + MPMX19_02810 0.77 -0.1
46,837 + MPMX19_02810 0.77 -0.6
46,837 + MPMX19_02810 0.77 -1.2
46,837 + MPMX19_02810 0.77 -1.2
46,837 + MPMX19_02810 0.77 +0.6
46,837 + MPMX19_02810 0.77 +0.7
46,838 - MPMX19_02810 0.77 -0.2
46,838 - MPMX19_02810 0.77 -1.7
46,838 - MPMX19_02810 0.77 -1.2
46,838 - MPMX19_02810 0.77 -0.4
46,838 - MPMX19_02810 0.77 +0.8
46,838 - MPMX19_02810 0.77 +0.8
46,838 - MPMX19_02810 0.77 -0.2
46,838 - MPMX19_02810 0.77 -0.7
46,838 - MPMX19_02810 0.77 -0.3
46,838 - MPMX19_02810 0.77 +1.7
46,838 - MPMX19_02810 0.77 -1.5
46,838 - MPMX19_02810 0.77 -0.2
46,838 - MPMX19_02810 0.77 -0.4
46,838 - MPMX19_02810 0.77 +1.1
46,838 - MPMX19_02810 0.77 -0.8
46,838 - MPMX19_02810 0.77 -2.5
46,838 - MPMX19_02810 0.77 +0.5
47,035 + +0.1
47,035 + -0.6
47,035 + +0.4
47,694 + MPMX19_02811 0.53 -0.0
47,694 + MPMX19_02811 0.53 -0.4
47,695 - MPMX19_02811 0.53 -0.5
47,695 - MPMX19_02811 0.53 +0.5
47,730 + MPMX19_02811 0.56 +0.4
47,731 - MPMX19_02811 0.56 +1.4
47,731 - MPMX19_02811 0.56 +0.8
47,731 - MPMX19_02811 0.56 +0.6
47,731 - MPMX19_02811 0.56 +0.6
47,833 - MPMX19_02811 0.65 +1.6
48,210 + +1.4
48,210 + -0.6
48,210 + -0.5
48,211 - +0.2
48,211 - -0.9
48,211 - +1.4
48,211 - +1.0
48,643 - MPMX19_02812 0.41 -0.2
48,678 + MPMX19_02812 0.45 +0.4
48,679 - MPMX19_02812 0.45 -0.4
48,679 - MPMX19_02812 0.45 -1.2
48,684 + MPMX19_02812 0.46 -1.1
48,684 + MPMX19_02812 0.46 +0.4
48,684 + MPMX19_02812 0.46 -0.0
48,684 + MPMX19_02812 0.46 -2.7
48,684 + MPMX19_02812 0.46 -1.5
48,684 + MPMX19_02812 0.46 +0.2
48,684 + MPMX19_02812 0.46 -2.4
48,684 + MPMX19_02812 0.46 -0.0
48,684 + MPMX19_02812 0.46 +1.9
48,685 - MPMX19_02812 0.46 -0.1
48,685 - MPMX19_02812 0.46 -0.1
48,685 - MPMX19_02812 0.46 -1.4
48,685 - MPMX19_02812 0.46 +1.7
48,685 - MPMX19_02812 0.46 -0.0
48,685 - MPMX19_02812 0.46 -0.3
48,685 - MPMX19_02812 0.46 -0.0
49,023 + MPMX19_02812 0.83 -0.1
49,023 + MPMX19_02812 0.83 -2.2
49,023 + MPMX19_02812 0.83 -1.3
49,024 - MPMX19_02812 0.83 +0.1
49,024 - MPMX19_02812 0.83 -0.2
49,024 - MPMX19_02812 0.83 -1.5
49,024 - MPMX19_02812 0.83 +0.3
49,155 + -0.2
49,155 + +0.1
49,156 - +0.1
49,156 - +1.6

Or see this region's nucleotide sequence