Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02532

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02530 and MPMX19_02531 are separated by 5 nucleotidesMPMX19_02531 and MPMX19_02532 overlap by 4 nucleotidesMPMX19_02532 and MPMX19_02533 are separated by 7 nucleotides MPMX19_02530: MPMX19_02530 - Heme exporter protein C, at 2,649,928 to 2,650,686 _02530 MPMX19_02531: MPMX19_02531 - hypothetical protein, at 2,650,692 to 2,650,937 _02531 MPMX19_02532: MPMX19_02532 - Cytochrome c-type biogenesis protein CcmE, at 2,650,934 to 2,651,398 _02532 MPMX19_02533: MPMX19_02533 - Cytochrome c-type biogenesis protein CcmF, at 2,651,406 to 2,653,412 _02533 Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2650.684 kb on + strandat 2650.684 kb on + strandat 2650.886 kb on + strand, within MPMX19_02531at 2650.886 kb on + strand, within MPMX19_02531at 2650.886 kb on + strand, within MPMX19_02531at 2650.886 kb on + strand, within MPMX19_02531at 2650.886 kb on + strand, within MPMX19_02531at 2650.958 kb on + strandat 2651.351 kb on + strand, within MPMX19_02532at 2651.351 kb on + strand, within MPMX19_02532at 2651.351 kb on + strand, within MPMX19_02532at 2651.351 kb on + strand, within MPMX19_02532at 2651.351 kb on + strand, within MPMX19_02532at 2651.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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2,650,684 + +0.4
2,650,684 + -1.0
2,650,886 + MPMX19_02531 0.79 -0.0
2,650,886 + MPMX19_02531 0.79 +0.4
2,650,886 + MPMX19_02531 0.79 -0.2
2,650,886 + MPMX19_02531 0.79 +1.4
2,650,886 + MPMX19_02531 0.79 +1.0
2,650,958 + -0.3
2,651,351 + MPMX19_02532 0.90 +0.4
2,651,351 + MPMX19_02532 0.90 +0.4
2,651,351 + MPMX19_02532 0.90 -2.5
2,651,351 + MPMX19_02532 0.90 +3.0
2,651,351 + MPMX19_02532 0.90 -0.1
2,651,352 - -0.8

Or see this region's nucleotide sequence