Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02108

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02107 and MPMX19_02108 are separated by 105 nucleotidesMPMX19_02108 and MPMX19_02109 are separated by 17 nucleotidesMPMX19_02109 and MPMX19_02110 overlap by 4 nucleotides MPMX19_02107: MPMX19_02107 - Primosomal protein N', at 2,204,353 to 2,206,659 _02107 MPMX19_02108: MPMX19_02108 - Transaldolase, at 2,206,765 to 2,207,421 _02108 MPMX19_02109: MPMX19_02109 - hypothetical protein, at 2,207,439 to 2,208,161 _02109 MPMX19_02110: MPMX19_02110 - Tyrosine recombinase XerC, at 2,208,158 to 2,209,108 _02110 Position (kb) 2206 2207 2208Strain fitness (log2 ratio) -2 -1 0 1at 2207.419 kb on + strandat 2207.419 kb on + strandat 2207.419 kb on + strandat 2207.419 kb on + strandat 2207.419 kb on + strandat 2207.419 kb on + strandat 2207.514 kb on + strand, within MPMX19_02109at 2207.514 kb on + strand, within MPMX19_02109at 2207.514 kb on + strand, within MPMX19_02109at 2207.514 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.964 kb on + strand, within MPMX19_02109at 2207.965 kb on - strand, within MPMX19_02109at 2207.965 kb on - strand, within MPMX19_02109at 2208.272 kb on + strand, within MPMX19_02110

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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2,207,419 + -0.2
2,207,419 + -1.0
2,207,419 + -1.4
2,207,419 + -1.8
2,207,419 + +0.0
2,207,419 + -0.8
2,207,514 + MPMX19_02109 0.10 -0.4
2,207,514 + MPMX19_02109 0.10 +0.8
2,207,514 + MPMX19_02109 0.10 +0.2
2,207,514 + MPMX19_02109 0.10 +1.3
2,207,964 + MPMX19_02109 0.73 -1.4
2,207,964 + MPMX19_02109 0.73 +1.0
2,207,964 + MPMX19_02109 0.73 +1.1
2,207,964 + MPMX19_02109 0.73 -0.4
2,207,964 + MPMX19_02109 0.73 -0.4
2,207,964 + MPMX19_02109 0.73 +1.1
2,207,964 + MPMX19_02109 0.73 +0.5
2,207,964 + MPMX19_02109 0.73 -1.4
2,207,964 + MPMX19_02109 0.73 -0.6
2,207,964 + MPMX19_02109 0.73 +1.4
2,207,964 + MPMX19_02109 0.73 +1.6
2,207,964 + MPMX19_02109 0.73 -1.2
2,207,964 + MPMX19_02109 0.73 -0.2
2,207,964 + MPMX19_02109 0.73 -1.8
2,207,965 - MPMX19_02109 0.73 -0.2
2,207,965 - MPMX19_02109 0.73 -1.0
2,208,272 + MPMX19_02110 0.12 +0.6

Or see this region's nucleotide sequence