Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00344

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00343 and MPMX19_00344 are separated by 141 nucleotidesMPMX19_00344 and MPMX19_00345 are separated by 25 nucleotidesMPMX19_00345 and MPMX19_00346 are separated by 99 nucleotides MPMX19_00343: MPMX19_00343 - Peptide chain release factor RF2, at 351,869 to 352,837 _00343 MPMX19_00344: MPMX19_00344 - hypothetical protein, at 352,979 to 353,305 _00344 MPMX19_00345: MPMX19_00345 - hypothetical protein, at 353,331 to 353,567 _00345 MPMX19_00346: MPMX19_00346 - Trehalose-phosphate phosphatase, at 353,667 to 354,467 _00346 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1at 352.951 kb on + strandat 352.951 kb on + strandat 352.951 kb on + strandat 352.951 kb on + strandat 352.951 kb on + strandat 352.951 kb on + strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 352.952 kb on - strandat 353.198 kb on + strand, within MPMX19_00344at 353.199 kb on - strand, within MPMX19_00344at 353.199 kb on - strand, within MPMX19_00344at 353.199 kb on - strand, within MPMX19_00344at 353.199 kb on - strand, within MPMX19_00344at 353.199 kb on - strand, within MPMX19_00344at 353.282 kb on + strandat 353.282 kb on + strandat 353.282 kb on + strandat 353.282 kb on + strandat 353.282 kb on + strandat 353.282 kb on + strandat 353.282 kb on + strandat 353.283 kb on - strandat 353.283 kb on - strandat 353.283 kb on - strandat 353.283 kb on - strandat 353.283 kb on - strandat 353.600 kb on + strandat 353.600 kb on + strandat 353.600 kb on + strandat 353.600 kb on + strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.601 kb on - strandat 353.616 kb on + strandat 353.616 kb on + strandat 353.851 kb on + strand, within MPMX19_00346at 353.851 kb on + strand, within MPMX19_00346at 353.851 kb on + strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 353.852 kb on - strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.151 kb on + strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.152 kb on - strand, within MPMX19_00346at 354.214 kb on + strand, within MPMX19_00346at 354.214 kb on + strand, within MPMX19_00346at 354.214 kb on + strand, within MPMX19_00346at 354.214 kb on + strand, within MPMX19_00346at 354.215 kb on - strand, within MPMX19_00346at 354.215 kb on - strand, within MPMX19_00346

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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352,951 + -0.1
352,951 + +0.5
352,951 + -2.0
352,951 + -1.1
352,951 + -1.9
352,951 + -0.7
352,952 - -1.4
352,952 - -1.0
352,952 - -0.7
352,952 - -0.6
352,952 - -1.9
352,952 - -0.4
352,952 - -0.6
352,952 - +0.2
352,952 - -2.7
353,198 + MPMX19_00344 0.67 -0.3
353,199 - MPMX19_00344 0.67 +0.6
353,199 - MPMX19_00344 0.67 -0.9
353,199 - MPMX19_00344 0.67 -0.2
353,199 - MPMX19_00344 0.67 +1.1
353,199 - MPMX19_00344 0.67 -0.5
353,282 + -0.3
353,282 + -1.1
353,282 + -1.1
353,282 + -0.3
353,282 + +0.1
353,282 + +0.0
353,282 + -1.0
353,283 - +0.0
353,283 - -1.3
353,283 - +1.3
353,283 - +0.9
353,283 - -0.3
353,600 + -0.7
353,600 + -0.2
353,600 + -0.3
353,600 + -1.2
353,601 - -0.6
353,601 - +0.5
353,601 - -2.7
353,601 - -0.2
353,601 - +1.0
353,601 - +0.7
353,601 - -2.5
353,601 - -0.7
353,601 - -0.9
353,601 - -0.2
353,616 + +0.1
353,616 + -0.5
353,851 + MPMX19_00346 0.23 -0.5
353,851 + MPMX19_00346 0.23 -2.4
353,851 + MPMX19_00346 0.23 -0.9
353,852 - MPMX19_00346 0.23 +0.0
353,852 - MPMX19_00346 0.23 +0.0
353,852 - MPMX19_00346 0.23 -0.2
353,852 - MPMX19_00346 0.23 -0.4
353,852 - MPMX19_00346 0.23 -0.1
353,852 - MPMX19_00346 0.23 -0.5
353,852 - MPMX19_00346 0.23 -0.8
354,151 + MPMX19_00346 0.60 -0.7
354,151 + MPMX19_00346 0.60 +0.4
354,151 + MPMX19_00346 0.60 -0.5
354,151 + MPMX19_00346 0.60 +0.5
354,151 + MPMX19_00346 0.60 -0.4
354,151 + MPMX19_00346 0.60 +0.4
354,151 + MPMX19_00346 0.60 +0.6
354,151 + MPMX19_00346 0.60 +0.1
354,151 + MPMX19_00346 0.60 -0.4
354,151 + MPMX19_00346 0.60 -0.8
354,151 + MPMX19_00346 0.60 +0.2
354,151 + MPMX19_00346 0.60 -0.2
354,151 + MPMX19_00346 0.60 -1.5
354,151 + MPMX19_00346 0.60 +0.6
354,151 + MPMX19_00346 0.60 +0.5
354,152 - MPMX19_00346 0.61 -0.4
354,152 - MPMX19_00346 0.61 +0.1
354,152 - MPMX19_00346 0.61 -2.2
354,152 - MPMX19_00346 0.61 -0.8
354,152 - MPMX19_00346 0.61 -0.3
354,152 - MPMX19_00346 0.61 -0.1
354,152 - MPMX19_00346 0.61 -1.3
354,152 - MPMX19_00346 0.61 +0.5
354,152 - MPMX19_00346 0.61 +0.3
354,152 - MPMX19_00346 0.61 -0.6
354,152 - MPMX19_00346 0.61 +0.9
354,152 - MPMX19_00346 0.61 +0.2
354,152 - MPMX19_00346 0.61 -1.1
354,152 - MPMX19_00346 0.61 -1.7
354,152 - MPMX19_00346 0.61 -2.4
354,152 - MPMX19_00346 0.61 +0.5
354,152 - MPMX19_00346 0.61 +0.5
354,152 - MPMX19_00346 0.61 -1.1
354,152 - MPMX19_00346 0.61 +0.0
354,152 - MPMX19_00346 0.61 -0.3
354,214 + MPMX19_00346 0.68 -0.4
354,214 + MPMX19_00346 0.68 +0.6
354,214 + MPMX19_00346 0.68 -0.2
354,214 + MPMX19_00346 0.68 -0.5
354,215 - MPMX19_00346 0.68 -0.1
354,215 - MPMX19_00346 0.68 -1.4

Or see this region's nucleotide sequence