Strain Fitness in Methylophilus sp. DMC18 around GFF76

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF75 and GFF76 are separated by 5 nucleotidesGFF76 and GFF77 are separated by 271 nucleotides GFF75 - Riboflavin biosynthesis protein RibD, at 84,726 to 85,817 GFF75 GFF76 - putative metal-dependent hydrolase YjjV, at 85,823 to 86,623 GFF76 GFF77 - Methylthioribose-1-phosphate isomerase, at 86,895 to 87,977 GFF77 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 85.808 kb on + strandat 85.809 kb on - strandat 85.822 kb on + strandat 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.018 kb on + strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.019 kb on - strand, within GFF76at 86.135 kb on + strand, within GFF76at 86.136 kb on - strand, within GFF76at 86.136 kb on - strand, within GFF76at 86.166 kb on + strand, within GFF76at 86.166 kb on + strand, within GFF76at 86.166 kb on + strand, within GFF76at 86.166 kb on + strand, within GFF76at 86.167 kb on - strand, within GFF76at 86.172 kb on + strand, within GFF76at 86.172 kb on + strand, within GFF76at 86.172 kb on + strand, within GFF76at 86.172 kb on + strand, within GFF76at 86.172 kb on + strand, within GFF76at 86.173 kb on - strand, within GFF76at 86.173 kb on - strand, within GFF76at 86.173 kb on - strand, within GFF76at 86.173 kb on - strand, within GFF76at 86.174 kb on + strand, within GFF76at 86.174 kb on + strand, within GFF76at 86.175 kb on - strand, within GFF76at 86.175 kb on - strand, within GFF76at 86.175 kb on - strand, within GFF76at 86.175 kb on - strand, within GFF76at 86.175 kb on - strand, within GFF76at 86.241 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.300 kb on + strand, within GFF76at 86.301 kb on - strand, within GFF76at 86.301 kb on - strand, within GFF76at 86.301 kb on - strand, within GFF76at 86.301 kb on - strand, within GFF76at 86.301 kb on - strand, within GFF76at 86.301 kb on - strand, within GFF76at 86.328 kb on + strand, within GFF76at 86.329 kb on - strand, within GFF76at 86.456 kb on - strand, within GFF76at 86.605 kb on - strandat 86.614 kb on - strandat 86.614 kb on - strandat 86.640 kb on - strandat 86.660 kb on + strandat 86.660 kb on + strandat 86.660 kb on + strandat 86.662 kb on + strandat 86.662 kb on + strandat 86.663 kb on - strandat 86.665 kb on + strandat 86.665 kb on + strandat 86.666 kb on - strandat 86.744 kb on + strandat 86.765 kb on + strandat 86.815 kb on + strandat 86.860 kb on - strandat 86.866 kb on - strandat 86.866 kb on - strandat 86.868 kb on + strandat 86.949 kb on + strandat 86.949 kb on + strandat 86.949 kb on + strandat 86.950 kb on - strandat 86.950 kb on - strandat 86.951 kb on + strandat 86.951 kb on + strandat 86.999 kb on - strandat 86.999 kb on - strandat 87.016 kb on + strand, within GFF77at 87.016 kb on + strand, within GFF77at 87.016 kb on + strand, within GFF77at 87.016 kb on + strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.017 kb on - strand, within GFF77at 87.078 kb on + strand, within GFF77at 87.079 kb on - strand, within GFF77at 87.095 kb on + strand, within GFF77at 87.095 kb on + strand, within GFF77at 87.096 kb on - strand, within GFF77at 87.096 kb on - strand, within GFF77at 87.096 kb on - strand, within GFF77at 87.096 kb on - strand, within GFF77at 87.136 kb on + strand, within GFF77at 87.136 kb on + strand, within GFF77at 87.362 kb on + strand, within GFF77at 87.457 kb on + strand, within GFF77at 87.457 kb on + strand, within GFF77at 87.458 kb on - strand, within GFF77at 87.458 kb on - strand, within GFF77at 87.543 kb on - strand, within GFF77at 87.592 kb on + strand, within GFF77at 87.592 kb on + strand, within GFF77at 87.592 kb on + strand, within GFF77at 87.593 kb on - strand, within GFF77

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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85,808 + -1.1
85,809 - -0.1
85,822 + -0.9
86,018 + GFF76 0.24 +0.1
86,018 + GFF76 0.24 +0.4
86,018 + GFF76 0.24 -1.2
86,018 + GFF76 0.24 -0.7
86,018 + GFF76 0.24 +0.1
86,018 + GFF76 0.24 -0.1
86,018 + GFF76 0.24 +0.1
86,018 + GFF76 0.24 -1.4
86,018 + GFF76 0.24 -0.6
86,018 + GFF76 0.24 -0.7
86,019 - GFF76 0.24 -0.3
86,019 - GFF76 0.24 -0.6
86,019 - GFF76 0.24 -1.8
86,019 - GFF76 0.24 -0.4
86,019 - GFF76 0.24 -0.9
86,019 - GFF76 0.24 -0.6
86,019 - GFF76 0.24 -1.9
86,019 - GFF76 0.24 -0.5
86,019 - GFF76 0.24 -1.4
86,019 - GFF76 0.24 +0.6
86,019 - GFF76 0.24 -0.7
86,019 - GFF76 0.24 +0.3
86,019 - GFF76 0.24 +0.3
86,019 - GFF76 0.24 +0.7
86,135 + GFF76 0.39 -1.5
86,136 - GFF76 0.39 -0.9
86,136 - GFF76 0.39 -1.1
86,166 + GFF76 0.43 -1.9
86,166 + GFF76 0.43 -0.2
86,166 + GFF76 0.43 -0.1
86,166 + GFF76 0.43 +0.2
86,167 - GFF76 0.43 -0.3
86,172 + GFF76 0.44 +0.5
86,172 + GFF76 0.44 +0.5
86,172 + GFF76 0.44 -0.9
86,172 + GFF76 0.44 -1.1
86,172 + GFF76 0.44 +0.2
86,173 - GFF76 0.44 +0.6
86,173 - GFF76 0.44 -1.2
86,173 - GFF76 0.44 -1.1
86,173 - GFF76 0.44 -1.1
86,174 + GFF76 0.44 -0.3
86,174 + GFF76 0.44 -0.5
86,175 - GFF76 0.44 -2.1
86,175 - GFF76 0.44 -2.5
86,175 - GFF76 0.44 -0.1
86,175 - GFF76 0.44 -0.4
86,175 - GFF76 0.44 -0.2
86,241 + GFF76 0.52 -0.5
86,300 + GFF76 0.60 +0.6
86,300 + GFF76 0.60 +0.7
86,300 + GFF76 0.60 -0.1
86,300 + GFF76 0.60 -0.4
86,300 + GFF76 0.60 -1.2
86,300 + GFF76 0.60 -1.2
86,300 + GFF76 0.60 +0.2
86,301 - GFF76 0.60 -1.4
86,301 - GFF76 0.60 -0.6
86,301 - GFF76 0.60 -1.1
86,301 - GFF76 0.60 -1.1
86,301 - GFF76 0.60 -1.2
86,301 - GFF76 0.60 -2.6
86,328 + GFF76 0.63 -0.1
86,329 - GFF76 0.63 +0.8
86,456 - GFF76 0.79 +0.6
86,605 - +0.6
86,614 - -1.1
86,614 - +0.2
86,640 - -0.4
86,660 + +0.2
86,660 + -1.1
86,660 + -1.1
86,662 + +0.3
86,662 + -0.4
86,663 - +1.5
86,665 + -1.6
86,665 + -0.9
86,666 - -1.1
86,744 + -0.4
86,765 + -0.3
86,815 + -0.9
86,860 - -0.9
86,866 - -1.4
86,866 - -1.1
86,868 + +0.6
86,949 + -0.9
86,949 + -0.1
86,949 + -0.6
86,950 - +0.1
86,950 - +0.9
86,951 + +0.6
86,951 + -0.9
86,999 - -0.9
86,999 - -1.0
87,016 + GFF77 0.11 +0.6
87,016 + GFF77 0.11 +0.4
87,016 + GFF77 0.11 -1.4
87,016 + GFF77 0.11 -1.6
87,017 - GFF77 0.11 -0.1
87,017 - GFF77 0.11 -0.2
87,017 - GFF77 0.11 -1.9
87,017 - GFF77 0.11 -1.4
87,017 - GFF77 0.11 -1.5
87,017 - GFF77 0.11 +0.2
87,017 - GFF77 0.11 +0.5
87,078 + GFF77 0.17 -1.6
87,079 - GFF77 0.17 -1.4
87,095 + GFF77 0.18 -0.4
87,095 + GFF77 0.18 -0.8
87,096 - GFF77 0.19 +0.5
87,096 - GFF77 0.19 -0.1
87,096 - GFF77 0.19 -1.9
87,096 - GFF77 0.19 -0.1
87,136 + GFF77 0.22 -1.2
87,136 + GFF77 0.22 +0.2
87,362 + GFF77 0.43 -1.0
87,457 + GFF77 0.52 -1.1
87,457 + GFF77 0.52 -0.1
87,458 - GFF77 0.52 -0.3
87,458 - GFF77 0.52 -1.1
87,543 - GFF77 0.60 -0.4
87,592 + GFF77 0.64 +1.5
87,592 + GFF77 0.64 -0.6
87,592 + GFF77 0.64 -1.4
87,593 - GFF77 0.64 +0.5

Or see this region's nucleotide sequence