Strain Fitness in Methylophilus sp. DMC18 around GFF696

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF695 and GFF696 are separated by 136 nucleotidesGFF696 and GFF697 are separated by 36 nucleotides GFF695 - D-inositol-3-phosphate glycosyltransferase, at 773,336 to 774,430 GFF695 GFF696 - hypothetical protein, at 774,567 to 775,625 GFF696 GFF697 - Lipid II flippase MurJ, at 775,662 to 777,173 GFF697 Position (kb) 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 774.437 kb on + strandat 774.437 kb on + strandat 774.438 kb on - strandat 774.446 kb on + strandat 774.447 kb on - strandat 774.448 kb on + strandat 774.448 kb on + strandat 774.448 kb on + strandat 774.448 kb on + strandat 774.457 kb on - strandat 774.463 kb on + strandat 774.483 kb on - strandat 774.491 kb on + strandat 774.491 kb on + strandat 774.492 kb on - strandat 774.492 kb on - strandat 774.492 kb on - strandat 774.525 kb on + strandat 774.525 kb on + strandat 774.528 kb on + strandat 774.566 kb on + strandat 774.566 kb on + strandat 774.566 kb on + strandat 774.587 kb on + strandat 774.587 kb on + strandat 774.588 kb on - strandat 774.588 kb on - strandat 774.601 kb on + strandat 774.608 kb on - strandat 774.633 kb on + strandat 774.633 kb on + strandat 774.633 kb on + strandat 774.634 kb on - strandat 774.634 kb on - strandat 774.662 kb on + strandat 774.672 kb on + strandat 774.672 kb on + strandat 774.673 kb on - strand, within GFF696at 774.749 kb on + strand, within GFF696at 774.803 kb on - strand, within GFF696at 774.803 kb on - strand, within GFF696at 774.823 kb on + strand, within GFF696at 774.823 kb on + strand, within GFF696at 774.823 kb on + strand, within GFF696at 774.824 kb on - strand, within GFF696at 774.849 kb on - strand, within GFF696at 774.849 kb on - strand, within GFF696at 774.849 kb on - strand, within GFF696at 774.849 kb on - strand, within GFF696at 774.855 kb on - strand, within GFF696at 774.881 kb on + strand, within GFF696at 774.881 kb on + strand, within GFF696at 774.882 kb on - strand, within GFF696at 774.882 kb on - strand, within GFF696at 774.882 kb on - strand, within GFF696at 774.882 kb on - strand, within GFF696at 774.888 kb on + strand, within GFF696at 774.888 kb on + strand, within GFF696at 774.888 kb on + strand, within GFF696at 774.888 kb on + strand, within GFF696at 774.897 kb on + strand, within GFF696at 774.897 kb on + strand, within GFF696at 774.898 kb on - strand, within GFF696at 774.898 kb on - strand, within GFF696at 774.920 kb on + strand, within GFF696at 774.920 kb on + strand, within GFF696at 774.929 kb on + strand, within GFF696at 774.929 kb on + strand, within GFF696at 774.929 kb on + strand, within GFF696at 774.929 kb on + strand, within GFF696at 774.929 kb on + strand, within GFF696at 774.930 kb on - strand, within GFF696at 774.930 kb on - strand, within GFF696at 774.946 kb on + strand, within GFF696at 774.947 kb on - strand, within GFF696at 774.977 kb on + strand, within GFF696at 774.977 kb on + strand, within GFF696at 774.978 kb on - strand, within GFF696at 774.993 kb on + strand, within GFF696at 774.993 kb on + strand, within GFF696at 774.993 kb on + strand, within GFF696at 774.993 kb on + strand, within GFF696at 774.994 kb on - strand, within GFF696at 774.994 kb on - strand, within GFF696at 774.994 kb on - strand, within GFF696at 775.011 kb on + strand, within GFF696at 775.012 kb on - strand, within GFF696at 775.012 kb on - strand, within GFF696at 775.015 kb on + strand, within GFF696at 775.016 kb on - strand, within GFF696at 775.033 kb on - strand, within GFF696at 775.033 kb on - strand, within GFF696at 775.035 kb on + strand, within GFF696at 775.047 kb on - strand, within GFF696at 775.054 kb on - strand, within GFF696at 775.057 kb on + strand, within GFF696at 775.058 kb on - strand, within GFF696at 775.066 kb on + strand, within GFF696at 775.079 kb on - strand, within GFF696at 775.082 kb on + strand, within GFF696at 775.083 kb on - strand, within GFF696at 775.083 kb on - strand, within GFF696at 775.083 kb on - strand, within GFF696at 775.083 kb on - strand, within GFF696at 775.085 kb on + strand, within GFF696at 775.086 kb on - strand, within GFF696at 775.105 kb on + strand, within GFF696at 775.106 kb on - strand, within GFF696at 775.144 kb on + strand, within GFF696at 775.145 kb on - strand, within GFF696at 775.151 kb on + strand, within GFF696at 775.151 kb on + strand, within GFF696at 775.152 kb on - strand, within GFF696at 775.162 kb on + strand, within GFF696at 775.201 kb on + strand, within GFF696at 775.201 kb on + strand, within GFF696at 775.207 kb on - strand, within GFF696at 775.212 kb on + strand, within GFF696at 775.212 kb on + strand, within GFF696at 775.212 kb on + strand, within GFF696at 775.213 kb on - strand, within GFF696at 775.213 kb on - strand, within GFF696at 775.213 kb on - strand, within GFF696at 775.213 kb on - strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.215 kb on + strand, within GFF696at 775.216 kb on - strand, within GFF696at 775.216 kb on - strand, within GFF696at 775.216 kb on - strand, within GFF696at 775.216 kb on - strand, within GFF696at 775.224 kb on - strand, within GFF696at 775.230 kb on - strand, within GFF696at 775.236 kb on + strand, within GFF696at 775.236 kb on + strand, within GFF696at 775.236 kb on + strand, within GFF696at 775.236 kb on + strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.237 kb on - strand, within GFF696at 775.240 kb on + strand, within GFF696at 775.242 kb on + strand, within GFF696at 775.242 kb on + strand, within GFF696at 775.252 kb on + strand, within GFF696at 775.295 kb on - strand, within GFF696at 775.301 kb on - strand, within GFF696at 775.310 kb on + strand, within GFF696at 775.311 kb on - strand, within GFF696at 775.333 kb on + strand, within GFF696at 775.336 kb on + strand, within GFF696at 775.336 kb on + strand, within GFF696at 775.393 kb on + strand, within GFF696at 775.393 kb on + strand, within GFF696at 775.393 kb on + strand, within GFF696at 775.394 kb on - strand, within GFF696at 775.409 kb on + strand, within GFF696at 775.412 kb on + strand, within GFF696at 775.413 kb on - strand, within GFF696at 775.413 kb on - strand, within GFF696at 775.417 kb on - strand, within GFF696at 775.423 kb on + strand, within GFF696at 775.423 kb on + strand, within GFF696at 775.424 kb on - strand, within GFF696at 775.426 kb on - strand, within GFF696at 775.433 kb on - strand, within GFF696at 775.433 kb on - strand, within GFF696at 775.462 kb on + strand, within GFF696at 775.463 kb on - strand, within GFF696at 775.474 kb on + strand, within GFF696at 775.477 kb on + strand, within GFF696at 775.486 kb on - strand, within GFF696at 775.486 kb on - strand, within GFF696at 775.508 kb on + strand, within GFF696at 775.508 kb on + strand, within GFF696at 775.508 kb on + strand, within GFF696at 775.509 kb on - strand, within GFF696at 775.509 kb on - strand, within GFF696at 775.509 kb on - strand, within GFF696at 775.532 kb on + strandat 775.532 kb on + strandat 775.532 kb on + strandat 775.542 kb on + strandat 775.542 kb on + strandat 775.542 kb on + strandat 775.543 kb on - strandat 775.553 kb on + strandat 775.553 kb on + strandat 775.554 kb on - strandat 775.557 kb on + strandat 775.611 kb on + strandat 775.611 kb on + strandat 775.611 kb on + strandat 775.611 kb on + strandat 775.611 kb on + strandat 775.611 kb on + strandat 775.612 kb on - strandat 775.615 kb on + strandat 775.615 kb on + strandat 775.624 kb on - strandat 775.628 kb on + strandat 775.638 kb on + strandat 775.638 kb on + strandat 775.638 kb on + strandat 775.638 kb on + strandat 775.638 kb on + strandat 775.638 kb on + strandat 775.639 kb on - strandat 775.642 kb on + strandat 775.642 kb on + strandat 775.642 kb on + strandat 775.642 kb on + strandat 775.642 kb on + strandat 775.642 kb on + strandat 775.642 kb on + strandat 775.643 kb on - strandat 775.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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774,437 + -0.9
774,437 + -0.4
774,438 - +0.1
774,446 + +0.0
774,447 - -1.3
774,448 + +0.0
774,448 + -3.0
774,448 + -1.3
774,448 + -0.9
774,457 - -0.7
774,463 + +0.2
774,483 - -0.5
774,491 + -1.5
774,491 + -0.3
774,492 - -1.1
774,492 - +0.2
774,492 - -1.0
774,525 + -0.7
774,525 + +1.2
774,528 + +0.2
774,566 + -0.1
774,566 + -1.0
774,566 + -2.1
774,587 + -1.3
774,587 + -0.5
774,588 - -1.3
774,588 - -1.3
774,601 + -1.7
774,608 - +0.9
774,633 + -0.1
774,633 + +1.1
774,633 + +0.1
774,634 - -1.4
774,634 - -0.9
774,662 + -1.1
774,672 + -0.7
774,672 + -1.7
774,673 - GFF696 0.10 -1.1
774,749 + GFF696 0.17 +0.2
774,803 - GFF696 0.22 -0.5
774,803 - GFF696 0.22 -0.3
774,823 + GFF696 0.24 +0.4
774,823 + GFF696 0.24 -1.2
774,823 + GFF696 0.24 +0.0
774,824 - GFF696 0.24 +0.9
774,849 - GFF696 0.27 -0.4
774,849 - GFF696 0.27 -1.0
774,849 - GFF696 0.27 -0.9
774,849 - GFF696 0.27 -0.4
774,855 - GFF696 0.27 -0.7
774,881 + GFF696 0.30 -0.1
774,881 + GFF696 0.30 -1.1
774,882 - GFF696 0.30 -0.2
774,882 - GFF696 0.30 -0.7
774,882 - GFF696 0.30 -1.9
774,882 - GFF696 0.30 -0.2
774,888 + GFF696 0.30 -1.4
774,888 + GFF696 0.30 -0.5
774,888 + GFF696 0.30 +0.5
774,888 + GFF696 0.30 +0.2
774,897 + GFF696 0.31 -0.9
774,897 + GFF696 0.31 -1.7
774,898 - GFF696 0.31 -0.7
774,898 - GFF696 0.31 -0.2
774,920 + GFF696 0.33 +0.5
774,920 + GFF696 0.33 -0.4
774,929 + GFF696 0.34 -0.5
774,929 + GFF696 0.34 -0.1
774,929 + GFF696 0.34 -0.4
774,929 + GFF696 0.34 -1.9
774,929 + GFF696 0.34 -1.7
774,930 - GFF696 0.34 +0.5
774,930 - GFF696 0.34 -1.1
774,946 + GFF696 0.36 -2.0
774,947 - GFF696 0.36 +1.9
774,977 + GFF696 0.39 -1.9
774,977 + GFF696 0.39 +1.0
774,978 - GFF696 0.39 -0.7
774,993 + GFF696 0.40 -0.4
774,993 + GFF696 0.40 -0.2
774,993 + GFF696 0.40 -1.7
774,993 + GFF696 0.40 -0.2
774,994 - GFF696 0.40 -0.1
774,994 - GFF696 0.40 +1.3
774,994 - GFF696 0.40 -1.7
775,011 + GFF696 0.42 +0.9
775,012 - GFF696 0.42 -0.2
775,012 - GFF696 0.42 +0.1
775,015 + GFF696 0.42 -1.1
775,016 - GFF696 0.42 -0.1
775,033 - GFF696 0.44 -0.1
775,033 - GFF696 0.44 +0.4
775,035 + GFF696 0.44 -0.3
775,047 - GFF696 0.45 -1.1
775,054 - GFF696 0.46 -0.1
775,057 + GFF696 0.46 +0.9
775,058 - GFF696 0.46 +0.2
775,066 + GFF696 0.47 -1.4
775,079 - GFF696 0.48 +0.4
775,082 + GFF696 0.49 +0.9
775,083 - GFF696 0.49 -1.1
775,083 - GFF696 0.49 -0.8
775,083 - GFF696 0.49 -0.9
775,083 - GFF696 0.49 -0.5
775,085 + GFF696 0.49 -1.3
775,086 - GFF696 0.49 +0.6
775,105 + GFF696 0.51 -0.3
775,106 - GFF696 0.51 -0.6
775,144 + GFF696 0.54 +0.7
775,145 - GFF696 0.55 -0.4
775,151 + GFF696 0.55 -1.4
775,151 + GFF696 0.55 -0.4
775,152 - GFF696 0.55 +0.2
775,162 + GFF696 0.56 -1.0
775,201 + GFF696 0.60 -0.3
775,201 + GFF696 0.60 +0.3
775,207 - GFF696 0.60 -1.7
775,212 + GFF696 0.61 -1.1
775,212 + GFF696 0.61 -0.1
775,212 + GFF696 0.61 -0.5
775,213 - GFF696 0.61 -1.6
775,213 - GFF696 0.61 -0.2
775,213 - GFF696 0.61 -1.3
775,213 - GFF696 0.61 +0.1
775,215 + GFF696 0.61 -2.1
775,215 + GFF696 0.61 -0.4
775,215 + GFF696 0.61 -0.6
775,215 + GFF696 0.61 -0.6
775,215 + GFF696 0.61 -1.1
775,215 + GFF696 0.61 -0.1
775,215 + GFF696 0.61 -1.9
775,215 + GFF696 0.61 +0.9
775,215 + GFF696 0.61 -0.5
775,216 - GFF696 0.61 -1.0
775,216 - GFF696 0.61 -0.4
775,216 - GFF696 0.61 -1.7
775,216 - GFF696 0.61 -0.0
775,224 - GFF696 0.62 -1.2
775,230 - GFF696 0.63 -0.8
775,236 + GFF696 0.63 -1.4
775,236 + GFF696 0.63 -0.4
775,236 + GFF696 0.63 -0.7
775,236 + GFF696 0.63 -0.4
775,237 - GFF696 0.63 -1.7
775,237 - GFF696 0.63 -0.1
775,237 - GFF696 0.63 +0.5
775,237 - GFF696 0.63 -0.1
775,237 - GFF696 0.63 -0.6
775,237 - GFF696 0.63 -0.8
775,237 - GFF696 0.63 +0.0
775,240 + GFF696 0.64 -0.9
775,242 + GFF696 0.64 -0.1
775,242 + GFF696 0.64 -1.1
775,252 + GFF696 0.65 -1.0
775,295 - GFF696 0.69 -1.3
775,301 - GFF696 0.69 -0.6
775,310 + GFF696 0.70 -0.1
775,311 - GFF696 0.70 +0.3
775,333 + GFF696 0.72 +0.5
775,336 + GFF696 0.73 -0.2
775,336 + GFF696 0.73 -0.7
775,393 + GFF696 0.78 -0.1
775,393 + GFF696 0.78 +0.0
775,393 + GFF696 0.78 +1.1
775,394 - GFF696 0.78 -2.6
775,409 + GFF696 0.80 -0.2
775,412 + GFF696 0.80 -0.5
775,413 - GFF696 0.80 +0.0
775,413 - GFF696 0.80 -0.5
775,417 - GFF696 0.80 -0.2
775,423 + GFF696 0.81 +0.1
775,423 + GFF696 0.81 -0.3
775,424 - GFF696 0.81 +0.3
775,426 - GFF696 0.81 -1.4
775,433 - GFF696 0.82 -0.7
775,433 - GFF696 0.82 +0.7
775,462 + GFF696 0.85 -0.5
775,463 - GFF696 0.85 +0.5
775,474 + GFF696 0.86 -1.7
775,477 + GFF696 0.86 +0.4
775,486 - GFF696 0.87 +0.1
775,486 - GFF696 0.87 +0.0
775,508 + GFF696 0.89 -0.4
775,508 + GFF696 0.89 +0.3
775,508 + GFF696 0.89 -1.2
775,509 - GFF696 0.89 -1.1
775,509 - GFF696 0.89 -1.9
775,509 - GFF696 0.89 +1.2
775,532 + -0.2
775,532 + -0.3
775,532 + -0.9
775,542 + +0.9
775,542 + -0.7
775,542 + -0.7
775,543 - -0.1
775,553 + -0.8
775,553 + -1.1
775,554 - +0.9
775,557 + -0.3
775,611 + -0.1
775,611 + +0.5
775,611 + -0.5
775,611 + -0.4
775,611 + -1.1
775,611 + -1.0
775,612 - -0.9
775,615 + +0.2
775,615 + -0.1
775,624 - -0.2
775,628 + -0.6
775,638 + -1.4
775,638 + -1.0
775,638 + +0.6
775,638 + -0.4
775,638 + +0.9
775,638 + -0.4
775,639 - -1.4
775,642 + -1.3
775,642 + +0.9
775,642 + -0.7
775,642 + -0.1
775,642 + -0.7
775,642 + -1.2
775,642 + -0.3
775,643 - +0.2
775,643 - -0.7

Or see this region's nucleotide sequence