Strain Fitness in Methylophilus sp. DMC18 around GFF6

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5 and GFF6 overlap by 4 nucleotidesGFF6 and GFF7 overlap by 20 nucleotidesGFF7 and GFF8 overlap by 17 nucleotides GFF5 - Putative type II secretion system protein F, at 4,063 to 5,235 GFF5 GFF6 - Type II secretion system protein E, at 5,232 to 6,944 GFF6 GFF7 - hypothetical protein, at 6,925 to 7,767 GFF7 GFF8 - hypothetical protein, at 7,751 to 8,329 GFF8 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 4.320 kb on + strand, within GFF5at 4.321 kb on - strand, within GFF5at 4.321 kb on - strand, within GFF5at 4.366 kb on - strand, within GFF5at 4.386 kb on - strand, within GFF5at 4.404 kb on - strand, within GFF5at 4.417 kb on + strand, within GFF5at 4.417 kb on + strand, within GFF5at 4.418 kb on - strand, within GFF5at 4.418 kb on - strand, within GFF5at 4.418 kb on - strand, within GFF5at 4.418 kb on - strand, within GFF5at 4.478 kb on - strand, within GFF5at 4.480 kb on - strand, within GFF5at 4.506 kb on - strand, within GFF5at 4.619 kb on - strand, within GFF5at 4.724 kb on + strand, within GFF5at 4.724 kb on + strand, within GFF5at 4.724 kb on + strand, within GFF5at 4.725 kb on - strand, within GFF5at 4.725 kb on - strand, within GFF5at 4.725 kb on - strand, within GFF5at 4.746 kb on - strand, within GFF5at 4.778 kb on + strand, within GFF5at 4.824 kb on + strand, within GFF5at 4.825 kb on + strand, within GFF5at 4.844 kb on - strand, within GFF5at 4.920 kb on + strand, within GFF5at 4.963 kb on - strand, within GFF5at 5.092 kb on + strand, within GFF5at 5.094 kb on - strand, within GFF5at 5.118 kb on - strandat 5.156 kb on + strandat 5.156 kb on + strandat 5.157 kb on - strandat 5.161 kb on - strandat 5.161 kb on - strandat 5.161 kb on - strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.197 kb on + strandat 5.198 kb on - strandat 5.198 kb on - strandat 5.198 kb on - strandat 5.199 kb on + strandat 5.200 kb on - strandat 5.275 kb on + strandat 5.276 kb on - strandat 5.276 kb on - strandat 5.296 kb on + strandat 5.296 kb on + strandat 5.297 kb on - strandat 5.297 kb on - strandat 5.297 kb on - strandat 5.297 kb on - strandat 5.439 kb on - strand, within GFF6at 5.455 kb on + strand, within GFF6at 5.476 kb on - strand, within GFF6at 5.477 kb on + strand, within GFF6at 5.477 kb on + strand, within GFF6at 5.511 kb on + strand, within GFF6at 5.511 kb on + strand, within GFF6at 5.578 kb on + strand, within GFF6at 5.684 kb on - strand, within GFF6at 5.787 kb on - strand, within GFF6at 5.787 kb on - strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.797 kb on + strand, within GFF6at 5.798 kb on - strand, within GFF6at 5.798 kb on - strand, within GFF6at 5.798 kb on - strand, within GFF6at 5.798 kb on - strand, within GFF6at 5.798 kb on - strand, within GFF6at 5.798 kb on - strand, within GFF6at 5.799 kb on + strand, within GFF6at 5.799 kb on + strand, within GFF6at 5.799 kb on + strand, within GFF6at 5.799 kb on + strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 5.800 kb on - strand, within GFF6at 6.045 kb on - strand, within GFF6at 6.076 kb on + strand, within GFF6at 6.179 kb on - strand, within GFF6at 6.179 kb on - strand, within GFF6at 6.244 kb on + strand, within GFF6at 6.244 kb on + strand, within GFF6at 6.244 kb on + strand, within GFF6at 6.244 kb on + strand, within GFF6at 6.244 kb on + strand, within GFF6at 6.244 kb on + strand, within GFF6at 6.245 kb on - strand, within GFF6at 6.245 kb on - strand, within GFF6at 6.246 kb on + strand, within GFF6at 6.247 kb on - strand, within GFF6at 6.312 kb on + strand, within GFF6at 6.319 kb on + strand, within GFF6at 6.319 kb on + strand, within GFF6at 6.320 kb on - strand, within GFF6at 6.492 kb on - strand, within GFF6at 6.539 kb on + strand, within GFF6at 6.540 kb on - strand, within GFF6at 6.540 kb on - strand, within GFF6at 6.540 kb on - strand, within GFF6at 6.540 kb on - strand, within GFF6at 6.585 kb on - strand, within GFF6at 6.652 kb on + strand, within GFF6at 6.652 kb on + strand, within GFF6at 6.653 kb on - strand, within GFF6at 6.670 kb on + strand, within GFF6at 6.671 kb on - strand, within GFF6at 6.701 kb on + strand, within GFF6at 6.702 kb on - strand, within GFF6at 6.702 kb on - strand, within GFF6at 6.770 kb on - strand, within GFF6at 6.790 kb on + strandat 6.854 kb on + strandat 6.854 kb on + strandat 6.860 kb on + strandat 6.953 kb on + strandat 6.953 kb on + strandat 6.953 kb on + strandat 6.953 kb on + strandat 6.954 kb on - strandat 6.954 kb on - strandat 7.005 kb on + strandat 7.006 kb on - strandat 7.088 kb on + strand, within GFF7at 7.089 kb on - strand, within GFF7at 7.133 kb on + strand, within GFF7at 7.141 kb on + strand, within GFF7at 7.141 kb on + strand, within GFF7at 7.234 kb on + strand, within GFF7at 7.235 kb on - strand, within GFF7at 7.235 kb on - strand, within GFF7at 7.235 kb on - strand, within GFF7at 7.235 kb on - strand, within GFF7at 7.251 kb on + strand, within GFF7at 7.251 kb on + strand, within GFF7at 7.252 kb on - strand, within GFF7at 7.262 kb on - strand, within GFF7at 7.278 kb on + strand, within GFF7at 7.279 kb on - strand, within GFF7at 7.279 kb on - strand, within GFF7at 7.321 kb on - strand, within GFF7at 7.374 kb on - strand, within GFF7at 7.408 kb on + strand, within GFF7at 7.408 kb on + strand, within GFF7at 7.408 kb on + strand, within GFF7at 7.408 kb on + strand, within GFF7at 7.409 kb on - strand, within GFF7at 7.584 kb on + strand, within GFF7at 7.616 kb on - strand, within GFF7at 7.649 kb on + strand, within GFF7at 7.650 kb on - strand, within GFF7at 7.650 kb on - strand, within GFF7at 7.774 kb on + strandat 7.775 kb on - strandat 7.794 kb on + strandat 7.845 kb on + strand, within GFF8at 7.846 kb on - strand, within GFF8at 7.846 kb on - strand, within GFF8at 7.868 kb on + strand, within GFF8

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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4,320 + GFF5 0.22 -0.3
4,321 - GFF5 0.22 +0.9
4,321 - GFF5 0.22 -1.2
4,366 - GFF5 0.26 -1.9
4,386 - GFF5 0.28 +0.6
4,404 - GFF5 0.29 -1.1
4,417 + GFF5 0.30 +0.5
4,417 + GFF5 0.30 -1.4
4,418 - GFF5 0.30 +0.9
4,418 - GFF5 0.30 -0.9
4,418 - GFF5 0.30 -0.6
4,418 - GFF5 0.30 +0.6
4,478 - GFF5 0.35 -0.2
4,480 - GFF5 0.36 -0.8
4,506 - GFF5 0.38 -0.3
4,619 - GFF5 0.47 -1.1
4,724 + GFF5 0.56 +0.1
4,724 + GFF5 0.56 -0.1
4,724 + GFF5 0.56 -1.4
4,725 - GFF5 0.56 +0.8
4,725 - GFF5 0.56 -1.1
4,725 - GFF5 0.56 -1.1
4,746 - GFF5 0.58 -0.9
4,778 + GFF5 0.61 -0.7
4,824 + GFF5 0.65 -1.6
4,825 + GFF5 0.65 -0.6
4,844 - GFF5 0.67 -0.8
4,920 + GFF5 0.73 -1.0
4,963 - GFF5 0.77 -0.3
5,092 + GFF5 0.88 +0.7
5,094 - GFF5 0.88 -1.9
5,118 - -0.4
5,156 + -1.3
5,156 + -1.1
5,157 - -0.4
5,161 - +0.3
5,161 - -0.4
5,161 - +0.4
5,197 + +0.5
5,197 + -0.7
5,197 + -0.4
5,197 + -0.4
5,197 + -0.7
5,197 + +0.9
5,197 + +0.0
5,197 + +0.1
5,198 - -0.4
5,198 - -0.3
5,198 - -0.5
5,199 + +0.5
5,200 - +0.2
5,275 + +0.6
5,276 - +0.3
5,276 - +0.8
5,296 + -0.7
5,296 + -0.4
5,297 - -1.6
5,297 - -1.8
5,297 - -1.4
5,297 - -1.2
5,439 - GFF6 0.12 -0.6
5,455 + GFF6 0.13 -0.4
5,476 - GFF6 0.14 -0.1
5,477 + GFF6 0.14 -1.1
5,477 + GFF6 0.14 +0.3
5,511 + GFF6 0.16 -1.9
5,511 + GFF6 0.16 -2.1
5,578 + GFF6 0.20 -1.8
5,684 - GFF6 0.26 +0.4
5,787 - GFF6 0.32 -0.8
5,787 - GFF6 0.32 +0.1
5,797 + GFF6 0.33 -1.8
5,797 + GFF6 0.33 +0.1
5,797 + GFF6 0.33 +0.9
5,797 + GFF6 0.33 -0.4
5,797 + GFF6 0.33 +0.1
5,797 + GFF6 0.33 -2.5
5,797 + GFF6 0.33 -0.4
5,798 - GFF6 0.33 -0.1
5,798 - GFF6 0.33 -0.1
5,798 - GFF6 0.33 -2.1
5,798 - GFF6 0.33 -0.5
5,798 - GFF6 0.33 -1.4
5,798 - GFF6 0.33 -0.1
5,799 + GFF6 0.33 -0.1
5,799 + GFF6 0.33 -1.9
5,799 + GFF6 0.33 -1.4
5,799 + GFF6 0.33 +0.2
5,800 - GFF6 0.33 -0.6
5,800 - GFF6 0.33 +0.4
5,800 - GFF6 0.33 +0.1
5,800 - GFF6 0.33 -2.1
5,800 - GFF6 0.33 -0.6
5,800 - GFF6 0.33 -1.1
5,800 - GFF6 0.33 -1.4
5,800 - GFF6 0.33 -0.2
5,800 - GFF6 0.33 -1.8
5,800 - GFF6 0.33 -1.6
6,045 - GFF6 0.47 -0.6
6,076 + GFF6 0.49 -0.3
6,179 - GFF6 0.55 -0.1
6,179 - GFF6 0.55 -2.4
6,244 + GFF6 0.59 -0.5
6,244 + GFF6 0.59 -0.9
6,244 + GFF6 0.59 -1.2
6,244 + GFF6 0.59 -2.2
6,244 + GFF6 0.59 -1.4
6,244 + GFF6 0.59 -0.5
6,245 - GFF6 0.59 -1.5
6,245 - GFF6 0.59 -0.5
6,246 + GFF6 0.59 +0.1
6,247 - GFF6 0.59 -0.4
6,312 + GFF6 0.63 -1.1
6,319 + GFF6 0.63 -0.1
6,319 + GFF6 0.63 -0.1
6,320 - GFF6 0.64 -1.1
6,492 - GFF6 0.74 -0.2
6,539 + GFF6 0.76 -0.1
6,540 - GFF6 0.76 -1.4
6,540 - GFF6 0.76 -0.1
6,540 - GFF6 0.76 -1.0
6,540 - GFF6 0.76 +0.4
6,585 - GFF6 0.79 -1.1
6,652 + GFF6 0.83 -1.1
6,652 + GFF6 0.83 -1.3
6,653 - GFF6 0.83 +0.3
6,670 + GFF6 0.84 -2.4
6,671 - GFF6 0.84 -0.2
6,701 + GFF6 0.86 -1.1
6,702 - GFF6 0.86 +0.1
6,702 - GFF6 0.86 -0.4
6,770 - GFF6 0.90 -0.2
6,790 + -1.3
6,854 + -1.4
6,854 + -0.1
6,860 + -2.2
6,953 + -0.3
6,953 + +0.7
6,953 + -0.1
6,953 + +0.9
6,954 - +0.5
6,954 - +0.5
7,005 + -1.4
7,006 - -0.1
7,088 + GFF7 0.19 -1.4
7,089 - GFF7 0.19 -1.1
7,133 + GFF7 0.25 -0.9
7,141 + GFF7 0.26 -0.4
7,141 + GFF7 0.26 -0.1
7,234 + GFF7 0.37 -0.1
7,235 - GFF7 0.37 -0.3
7,235 - GFF7 0.37 -0.6
7,235 - GFF7 0.37 +0.6
7,235 - GFF7 0.37 -0.4
7,251 + GFF7 0.39 -0.5
7,251 + GFF7 0.39 -1.4
7,252 - GFF7 0.39 -2.2
7,262 - GFF7 0.40 -0.8
7,278 + GFF7 0.42 +0.3
7,279 - GFF7 0.42 -0.4
7,279 - GFF7 0.42 -1.2
7,321 - GFF7 0.47 -0.1
7,374 - GFF7 0.53 -1.4
7,408 + GFF7 0.57 -0.4
7,408 + GFF7 0.57 -1.1
7,408 + GFF7 0.57 -0.5
7,408 + GFF7 0.57 -0.9
7,409 - GFF7 0.57 -0.1
7,584 + GFF7 0.78 -1.1
7,616 - GFF7 0.82 -1.1
7,649 + GFF7 0.86 +0.2
7,650 - GFF7 0.86 -1.5
7,650 - GFF7 0.86 -1.0
7,774 + -0.1
7,775 - -0.6
7,794 + -1.5
7,845 + GFF8 0.16 +0.4
7,846 - GFF8 0.16 +0.4
7,846 - GFF8 0.16 -0.1
7,868 + GFF8 0.20 +0.1

Or see this region's nucleotide sequence