Strain Fitness in Methylophilus sp. DMC18 around GFF2008

Experiment: dNMS no carbon

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	dNMS no carbon
44,436	-				-0.7
44,436	-				-1.3
44,445	+				-0.5
44,453	+				-1.3
44,453	+				-0.4
44,453	+				-0.3
44,453	+				-0.9
44,454	-				-1.3
44,454	-				-0.8
44,454	-				-0.9
44,454	-				+0.7
44,455	+				-0.4
44,486	+				-1.1
44,486	+				-0.2
44,486	+				-0.8
44,618	+				-0.6
44,618	+				+0.7
44,625	+				-0.1
44,625	+				-1.9
44,625	+				-1.5
44,625	+				-1.3
44,625	+				-0.5
44,625	+				-0.8
44,625	+				-0.7
44,625	+				-1.3
44,625	+				-0.9
44,625	+				-1.9
44,625	+				+0.3
44,625	+				-1.9
44,625	+				-1.0
44,626	-				-0.9
44,626	-				-1.1
44,626	-				+0.4
44,626	-				-0.5
44,626	-				-0.5
44,626	-				-0.4
44,646	+				+0.6
44,647	-				-0.2
44,659	+				-0.3
44,667	+				-0.4
44,668	+				-0.1
44,668	-				-1.5
44,668	-				+0.3
44,668	-				-0.1
44,808	+		GFF2008	0.11	-1.1
44,808	+		GFF2008	0.11	-0.1
44,809	-		GFF2008	0.11	-0.7
44,809	-		GFF2008	0.11	+0.6
44,809	-		GFF2008	0.11	+0.4
44,809	-		GFF2008	0.11	-1.2
44,809	-		GFF2008	0.11	+0.1
44,823	+		GFF2008	0.12	-0.3
44,823	+		GFF2008	0.12	-1.8
44,823	+		GFF2008	0.12	-0.0
44,823	+		GFF2008	0.12	-1.2
44,823	+		GFF2008	0.12	-1.5
44,823	+		GFF2008	0.12	-0.9
44,824	-		GFF2008	0.12	-2.2
44,958	-		GFF2008	0.17	-1.1
45,039	+		GFF2008	0.19	-0.6
45,039	+		GFF2008	0.19	-1.2
45,088	+		GFF2008	0.21	-0.8
45,089	-		GFF2008	0.21	-1.3
45,110	+		GFF2008	0.22	-0.9
45,111	-		GFF2008	0.22	+1.4
45,111	-		GFF2008	0.22	-0.6
45,127	+		GFF2008	0.23	-1.1
45,128	-		GFF2008	0.23	+0.1
45,255	+		GFF2008	0.27	-0.5
45,256	-		GFF2008	0.27	+0.1
45,256	-		GFF2008	0.27	-0.9
45,283	+		GFF2008	0.28	-1.9
45,293	+		GFF2008	0.28	-0.3
45,382	+		GFF2008	0.32	-1.1
45,382	+		GFF2008	0.32	-0.5
45,382	+		GFF2008	0.32	-0.6
45,382	+		GFF2008	0.32	+0.2
45,465	+		GFF2008	0.34	-1.4
45,465	+		GFF2008	0.34	-0.9
45,465	+		GFF2008	0.34	-1.6
45,465	+		GFF2008	0.34	-0.3
45,466	-		GFF2008	0.34	-1.7
45,466	-		GFF2008	0.34	-0.3
45,466	-		GFF2008	0.34	-0.9
45,528	+		GFF2008	0.37	-1.3
45,528	+		GFF2008	0.37	-0.2
45,528	+		GFF2008	0.37	-0.3
45,528	+		GFF2008	0.37	-0.9
45,528	+		GFF2008	0.37	-0.9
45,528	+		GFF2008	0.37	-0.6
45,529	-		GFF2008	0.37	+0.1
45,529	-		GFF2008	0.37	-1.9
45,529	-		GFF2008	0.37	-1.4
45,557	+		GFF2008	0.38	+0.4
45,557	+		GFF2008	0.38	-0.7
45,561	+		GFF2008	0.38	-0.4
45,561	+		GFF2008	0.38	-1.1
45,562	-		GFF2008	0.38	+0.1
45,562	-		GFF2008	0.38	+1.1
45,600	-		GFF2008	0.39	-0.3
45,615	-		GFF2008	0.40	+0.1
45,681	+		GFF2008	0.42	-1.3
45,681	+		GFF2008	0.42	-1.6
45,682	-		GFF2008	0.42	-2.3
45,683	+		GFF2008	0.42	+0.1
45,684	-		GFF2008	0.42	-0.1
45,684	-		GFF2008	0.42	-0.5
45,912	+		GFF2008	0.50	-0.0
45,912	+		GFF2008	0.50	-1.9
45,912	+		GFF2008	0.50	-0.3
45,912	+		GFF2008	0.50	-0.6
45,913	-		GFF2008	0.50	+0.1
45,913	-		GFF2008	0.50	+0.3
45,913	-		GFF2008	0.50	+0.8
46,011	+		GFF2008	0.54	-0.9
46,011	+		GFF2008	0.54	-1.1
46,011	+		GFF2008	0.54	-0.5
46,011	+		GFF2008	0.54	-0.7
46,011	+		GFF2008	0.54	+0.2
46,011	+		GFF2008	0.54	+0.8
46,011	+		GFF2008	0.54	-1.0
46,011	+		GFF2008	0.54	-0.6
46,011	+		GFF2008	0.54	-0.9
46,011	+		GFF2008	0.54	-0.4
46,011	+		GFF2008	0.54	-1.0
46,011	+		GFF2008	0.54	+0.2
46,011	+		GFF2008	0.54	-0.3
46,011	+		GFF2008	0.54	-1.0
46,011	+		GFF2008	0.54	-0.4
46,011	+		GFF2008	0.54	-1.3
46,011	+		GFF2008	0.54	-0.6
46,011	+		GFF2008	0.54	-0.7
46,011	+		GFF2008	0.54	+0.6
46,012	-		GFF2008	0.54	-0.8
46,012	-		GFF2008	0.54	+0.1
46,012	-		GFF2008	0.54	+0.2
46,012	-		GFF2008	0.54	-0.9
46,012	-		GFF2008	0.54	-1.6
46,012	-		GFF2008	0.54	-0.7
46,012	-		GFF2008	0.54	-1.9
46,097	+		GFF2008	0.57	-1.7
46,097	+		GFF2008	0.57	-1.3
46,097	+		GFF2008	0.57	-0.8
46,097	+		GFF2008	0.57	-0.4
46,097	+		GFF2008	0.57	-1.4
46,097	+		GFF2008	0.57	-2.0
46,098	-		GFF2008	0.57	+0.6
46,098	-		GFF2008	0.57	-0.0
46,098	-		GFF2008	0.57	-1.4
46,151	+		GFF2008	0.59	+0.6
46,151	+		GFF2008	0.59	+0.1
46,151	+		GFF2008	0.59	-1.5
46,152	-		GFF2008	0.59	+0.6
46,193	+		GFF2008	0.60	-0.3
46,193	+		GFF2008	0.60	-1.6
46,193	+		GFF2008	0.60	-0.9
46,193	+		GFF2008	0.60	+0.6
46,193	+		GFF2008	0.60	-2.1
46,193	+		GFF2008	0.60	-0.8
46,194	-		GFF2008	0.60	-0.9
46,254	+		GFF2008	0.62	-1.9
46,254	+		GFF2008	0.62	-0.8
46,254	+		GFF2008	0.62	+0.2
46,255	-		GFF2008	0.62	-1.5
46,255	-		GFF2008	0.62	-0.1
46,255	-		GFF2008	0.62	-1.1
46,255	-		GFF2008	0.62	-1.4
46,256	+		GFF2008	0.62	-1.3
46,256	+		GFF2008	0.62	-1.3
46,256	+		GFF2008	0.62	-0.3
46,256	+		GFF2008	0.62	-0.2
46,256	+		GFF2008	0.62	-1.3
46,256	+		GFF2008	0.62	+0.3
46,256	+		GFF2008	0.62	-0.7
46,257	-		GFF2008	0.62	-1.0
46,257	-		GFF2008	0.62	-0.9
46,257	-		GFF2008	0.62	-0.8
46,277	+		GFF2008	0.63	-0.4
46,278	-		GFF2008	0.63	-1.0
46,470	+		GFF2008	0.70	-0.3
46,470	+		GFF2008	0.70	-1.5
46,470	+		GFF2008	0.70	+0.2
46,470	+		GFF2008	0.70	-1.4
46,590	+		GFF2008	0.74	-0.8
46,590	+		GFF2008	0.74	-0.1
46,590	+		GFF2008	0.74	+0.4
46,590	+		GFF2008	0.74	-0.6
46,590	+		GFF2008	0.74	-0.3
46,590	+		GFF2008	0.74	-0.6
46,590	+		GFF2008	0.74	-0.9
46,590	+		GFF2008	0.74	-0.7
46,591	-		GFF2008	0.74	-0.4
46,591	-		GFF2008	0.74	+0.1
46,604	+		GFF2008	0.75	-0.4
46,679	+		GFF2008	0.77	-0.9
46,758	+		GFF2008	0.80	-0.8
46,758	+		GFF2008	0.80	-1.3
46,758	+		GFF2008	0.80	-1.5
46,758	+		GFF2008	0.80	-2.1
46,758	+		GFF2008	0.80	-1.8
46,758	+		GFF2008	0.80	-0.3
46,758	+		GFF2008	0.80	-0.6
46,758	+		GFF2008	0.80	-0.7
46,758	+		GFF2008	0.80	-1.5
46,758	+		GFF2008	0.80	+0.4
46,759	-		GFF2008	0.80	-1.3
46,759	-		GFF2008	0.80	-0.6
46,759	-		GFF2008	0.80	-0.0
46,759	-		GFF2008	0.80	-0.6
46,759	-		GFF2008	0.80	-1.3
46,759	-		GFF2008	0.80	-0.8
46,759	-		GFF2008	0.80	-0.7
46,759	-		GFF2008	0.80	-0.3
46,759	-		GFF2008	0.80	-0.3
46,759	-		GFF2008	0.80	+0.6
46,759	-		GFF2008	0.80	+0.1
46,759	-		GFF2008	0.80	-0.1
46,791	+		GFF2008	0.81	-0.5
46,791	+		GFF2008	0.81	-1.4
46,791	+		GFF2008	0.81	-0.6
46,791	+		GFF2008	0.81	+0.9
46,792	-		GFF2008	0.81	-1.5
46,792	-		GFF2008	0.81	+0.6
46,843	+		GFF2008	0.83	-0.4
46,843	+		GFF2008	0.83	-0.6
46,844	-		GFF2008	0.83	-0.9
46,880	+		GFF2008	0.84	-0.5
46,938	+		GFF2008	0.87	-0.7
46,938	+		GFF2008	0.87	-0.9
46,938	+		GFF2008	0.87	+0.1
46,938	+		GFF2008	0.87	-2.6
46,938	+		GFF2008	0.87	-1.3
46,939	-		GFF2008	0.87	-0.9
46,940	+		GFF2008	0.87	-1.1
46,941	-		GFF2008	0.87	-0.1
47,040	+				+0.1
47,040	+				-0.5
47,040	+				-1.1
47,040	+				-0.8
47,040	+				+0.2
47,040	+				+0.5
47,040	+				-1.9
47,040	+				-0.3
47,040	+				-0.5
47,040	+				+0.3
47,041	-				+0.6
47,041	-				-0.7
47,041	-				-0.2
47,041	-				-1.3
47,041	-				-1.5
47,041	-				-0.1
47,041	-				-0.8
47,041	-				-1.6
47,041	-				-0.9
47,041	-				-1.0
47,041	-				-0.9
47,043	-				+0.5
47,043	-				+1.2
47,047	+				-0.8
47,047	+				-1.3
47,047	+				-0.2
47,047	+				-1.2
47,047	+				+1.1
47,048	-				-1.1
47,089	+				-2.4
47,089	+				-0.7
47,089	+				-0.7
47,090	-				-0.6
47,090	-				-0.7
47,271	+				+1.4
47,299	+				-1.0
47,321	+				-0.4
47,322	-				+0.1
47,395	+				-1.2
47,422	+				-0.2
47,422	+				+0.1
47,423	-				-0.8
47,429	-				-0.8
47,443	-				-0.9
47,451	+				-0.8
47,451	+				-0.8
47,455	+				-1.5
47,455	+				-1.4
47,455	+				-1.3
47,456	-				+1.1
47,456	-				-1.9
47,456	-				-1.9
47,494	-				+0.7
47,554	+				-0.2
47,554	+				-1.5
47,554	+				-0.7
47,554	+				+0.6
47,555	-				-0.3
47,555	-				-0.3
47,555	-				-1.3
47,555	-				-2.5
47,555	-				+0.1
47,556	+				-1.1
47,556	+				-0.7
47,556	+				-1.3
47,556	+				-1.1
47,556	+				-0.3
47,556	+				-1.2
47,557	-				+0.0
47,637	+				-1.7
47,637	+				-0.6
47,637	+				-0.9
47,637	+				-0.7
47,637	+				-1.3
47,637	+				+0.2
47,638	-				-0.5
47,641	+				-1.9
47,641	+				-0.0
47,685	+		GFF2009	0.14	-1.4
47,685	+		GFF2009	0.14	-0.5
47,697	+		GFF2009	0.15	-0.7
47,826	+		GFF2009	0.27	-0.1
47,826	+		GFF2009	0.27	+0.1
47,826	+		GFF2009	0.27	+1.6
47,827	-		GFF2009	0.27	-0.9
47,827	-		GFF2009	0.27	-0.4
47,864	-		GFF2009	0.31	-0.5
47,917	+		GFF2009	0.36	+0.3
48,171	+		GFF2009	0.59	+0.3
48,172	-		GFF2009	0.59	-1.7
48,172	-		GFF2009	0.59	-1.1
48,186	+		GFF2009	0.61	+2.4
48,186	+		GFF2009	0.61	-1.7
48,186	+		GFF2009	0.61	-2.1
48,187	-		GFF2009	0.61	-2.6
48,187	-		GFF2009	0.61	-0.9
48,187	-		GFF2009	0.61	+0.1
48,187	-		GFF2009	0.61	+0.5
48,187	-		GFF2009	0.61	-1.5
48,187	-		GFF2009	0.61	-0.9
48,228	-		GFF2009	0.64	+0.1
48,251	-		GFF2009	0.67	-0.9
48,265	+		GFF2009	0.68	+0.3
48,284	+		GFF2009	0.70	+1.2
48,284	+		GFF2009	0.70	+0.5
48,285	-		GFF2009	0.70	+0.8
48,285	-		GFF2009	0.70	-1.1
48,297	+		GFF2009	0.71	-0.7
48,306	+		GFF2009	0.72	+0.1
48,306	-		GFF2009	0.72	-0.3
48,306	-		GFF2009	0.72	-0.9
48,306	-		GFF2009	0.72	-0.5
48,306	-		GFF2009	0.72	-0.9
48,307	+		GFF2009	0.72	-0.3
48,308	-		GFF2009	0.72	-1.1
48,308	-		GFF2009	0.72	-0.6
48,308	-		GFF2009	0.72	-1.4