Strain Fitness in Methylophilus sp. DMC18 around GFF1348

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1347 and GFF1348 are separated by 96 nucleotidesGFF1348 and GFF1349 are separated by 44 nucleotidesGFF1349 and GFF1350 are separated by 30 nucleotides GFF1347 - Motility protein B, at 612,397 to 613,341 GFF1347 GFF1348 - hypothetical protein, at 613,438 to 613,980 GFF1348 GFF1349 - Phosphate regulon transcriptional regulatory protein PhoB, at 614,025 to 614,393 GFF1349 GFF1350 - hypothetical protein, at 614,424 to 616,838 GFF1350 Position (kb) 613 614Strain fitness (log2 ratio) -2 -1 0 1at 612.485 kb on - strandat 612.485 kb on - strandat 612.549 kb on + strand, within GFF1347at 612.550 kb on - strand, within GFF1347at 612.578 kb on - strand, within GFF1347at 612.582 kb on + strand, within GFF1347at 612.583 kb on - strand, within GFF1347at 612.672 kb on + strand, within GFF1347at 612.672 kb on + strand, within GFF1347at 612.673 kb on - strand, within GFF1347at 612.673 kb on - strand, within GFF1347at 612.673 kb on - strand, within GFF1347at 612.727 kb on - strand, within GFF1347at 612.727 kb on - strand, within GFF1347at 612.740 kb on + strand, within GFF1347at 612.848 kb on + strand, within GFF1347at 612.881 kb on + strand, within GFF1347at 612.943 kb on + strand, within GFF1347at 612.994 kb on - strand, within GFF1347at 613.033 kb on + strand, within GFF1347at 613.034 kb on - strand, within GFF1347at 613.054 kb on + strand, within GFF1347at 613.060 kb on - strand, within GFF1347at 613.136 kb on + strand, within GFF1347at 613.136 kb on + strand, within GFF1347at 613.250 kb on + strandat 613.250 kb on + strandat 613.251 kb on - strandat 613.251 kb on - strandat 613.357 kb on + strandat 613.384 kb on - strandat 613.392 kb on + strandat 613.393 kb on - strandat 613.393 kb on - strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.428 kb on + strandat 613.429 kb on - strandat 613.429 kb on - strandat 613.429 kb on - strandat 613.437 kb on + strandat 613.437 kb on + strandat 613.455 kb on - strandat 613.463 kb on + strandat 613.463 kb on + strandat 613.463 kb on + strandat 613.464 kb on - strandat 613.464 kb on - strandat 613.464 kb on - strandat 613.472 kb on + strandat 613.472 kb on + strandat 613.594 kb on + strand, within GFF1348at 613.594 kb on + strand, within GFF1348at 613.594 kb on + strand, within GFF1348at 613.594 kb on + strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.595 kb on - strand, within GFF1348at 613.604 kb on + strand, within GFF1348at 613.631 kb on + strand, within GFF1348at 613.696 kb on - strand, within GFF1348at 613.790 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.802 kb on + strand, within GFF1348at 613.803 kb on - strand, within GFF1348at 613.803 kb on - strand, within GFF1348at 613.812 kb on - strand, within GFF1348at 613.974 kb on - strandat 613.978 kb on + strandat 614.041 kb on + strandat 614.041 kb on + strandat 614.048 kb on - strandat 614.103 kb on + strand, within GFF1349at 614.104 kb on - strand, within GFF1349at 614.113 kb on + strand, within GFF1349at 614.114 kb on - strand, within GFF1349at 614.231 kb on + strand, within GFF1349at 614.231 kb on + strand, within GFF1349at 614.232 kb on - strand, within GFF1349at 614.245 kb on - strand, within GFF1349at 614.258 kb on + strand, within GFF1349at 614.371 kb on + strandat 614.371 kb on + strandat 614.380 kb on + strandat 614.391 kb on + strandat 614.436 kb on - strandat 614.448 kb on + strandat 614.479 kb on + strandat 614.479 kb on + strandat 614.479 kb on + strandat 614.479 kb on + strandat 614.518 kb on + strandat 614.519 kb on - strandat 614.519 kb on - strandat 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.738 kb on + strand, within GFF1350at 614.739 kb on - strand, within GFF1350at 614.739 kb on - strand, within GFF1350at 614.739 kb on - strand, within GFF1350at 614.755 kb on + strand, within GFF1350at 614.755 kb on + strand, within GFF1350at 614.756 kb on - strand, within GFF1350at 614.756 kb on - strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.935 kb on + strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.936 kb on - strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.937 kb on + strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.938 kb on - strand, within GFF1350at 614.938 kb on - strand, within GFF1350

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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612,485 - +0.2
612,485 - +0.5
612,549 + GFF1347 0.16 +0.6
612,550 - GFF1347 0.16 -0.1
612,578 - GFF1347 0.19 +0.2
612,582 + GFF1347 0.20 +0.2
612,583 - GFF1347 0.20 +0.7
612,672 + GFF1347 0.29 -0.2
612,672 + GFF1347 0.29 +0.3
612,673 - GFF1347 0.29 -0.7
612,673 - GFF1347 0.29 -0.5
612,673 - GFF1347 0.29 -0.1
612,727 - GFF1347 0.35 +1.2
612,727 - GFF1347 0.35 +0.5
612,740 + GFF1347 0.36 +0.1
612,848 + GFF1347 0.48 +0.6
612,881 + GFF1347 0.51 +0.1
612,943 + GFF1347 0.58 -1.9
612,994 - GFF1347 0.63 +0.2
613,033 + GFF1347 0.67 +0.2
613,034 - GFF1347 0.67 +0.0
613,054 + GFF1347 0.70 +0.1
613,060 - GFF1347 0.70 -0.4
613,136 + GFF1347 0.78 +0.1
613,136 + GFF1347 0.78 -0.1
613,250 + -0.5
613,250 + -0.7
613,251 - +0.9
613,251 - -0.1
613,357 + -1.7
613,384 - -0.1
613,392 + -0.1
613,393 - -1.7
613,393 - +0.4
613,428 + -0.7
613,428 + -0.9
613,428 + -0.7
613,428 + -0.9
613,428 + -2.4
613,428 + -0.9
613,429 - -0.4
613,429 - +0.3
613,429 - -0.4
613,437 + -0.1
613,437 + -0.0
613,455 - -0.8
613,463 + -1.3
613,463 + -0.3
613,463 + -0.3
613,464 - -0.8
613,464 - -0.7
613,464 - -0.3
613,472 + -1.7
613,472 + +0.1
613,594 + GFF1348 0.29 -1.9
613,594 + GFF1348 0.29 -1.9
613,594 + GFF1348 0.29 -1.2
613,594 + GFF1348 0.29 -0.8
613,595 - GFF1348 0.29 +0.3
613,595 - GFF1348 0.29 -0.9
613,595 - GFF1348 0.29 +0.5
613,595 - GFF1348 0.29 -0.3
613,595 - GFF1348 0.29 -0.1
613,604 + GFF1348 0.31 -1.6
613,631 + GFF1348 0.36 -0.2
613,696 - GFF1348 0.48 -0.1
613,790 + GFF1348 0.65 -1.4
613,802 + GFF1348 0.67 -0.3
613,802 + GFF1348 0.67 -0.1
613,802 + GFF1348 0.67 -1.9
613,802 + GFF1348 0.67 -0.2
613,803 - GFF1348 0.67 -0.7
613,803 - GFF1348 0.67 +0.6
613,812 - GFF1348 0.69 -1.7
613,974 - -0.8
613,978 + -1.7
614,041 + -0.9
614,041 + +0.9
614,048 - +0.2
614,103 + GFF1349 0.21 -0.5
614,104 - GFF1349 0.21 -0.1
614,113 + GFF1349 0.24 -0.7
614,114 - GFF1349 0.24 -1.4
614,231 + GFF1349 0.56 -1.4
614,231 + GFF1349 0.56 -0.1
614,232 - GFF1349 0.56 +0.5
614,245 - GFF1349 0.60 -0.2
614,258 + GFF1349 0.63 -1.1
614,371 + -1.2
614,371 + +0.3
614,380 + -1.7
614,391 + -1.4
614,436 - -0.7
614,448 + +0.9
614,479 + -1.1
614,479 + +0.1
614,479 + +0.1
614,479 + -0.3
614,518 + -2.4
614,519 - -0.7
614,519 - -1.1
614,738 + GFF1350 0.13 -1.3
614,738 + GFF1350 0.13 +0.2
614,738 + GFF1350 0.13 -2.2
614,738 + GFF1350 0.13 +0.2
614,738 + GFF1350 0.13 -0.8
614,739 - GFF1350 0.13 -0.5
614,739 - GFF1350 0.13 -1.2
614,739 - GFF1350 0.13 -1.4
614,755 + GFF1350 0.14 -0.8
614,755 + GFF1350 0.14 -1.8
614,756 - GFF1350 0.14 -1.1
614,756 - GFF1350 0.14 -0.7
614,935 + GFF1350 0.21 -1.2
614,935 + GFF1350 0.21 -0.4
614,935 + GFF1350 0.21 -0.8
614,935 + GFF1350 0.21 +0.3
614,935 + GFF1350 0.21 -1.1
614,935 + GFF1350 0.21 -1.4
614,935 + GFF1350 0.21 -0.1
614,935 + GFF1350 0.21 -0.1
614,935 + GFF1350 0.21 +0.7
614,935 + GFF1350 0.21 -0.2
614,936 - GFF1350 0.21 -0.1
614,936 - GFF1350 0.21 -0.1
614,936 - GFF1350 0.21 -1.4
614,936 - GFF1350 0.21 -0.7
614,937 + GFF1350 0.21 -0.2
614,937 + GFF1350 0.21 -0.3
614,937 + GFF1350 0.21 -1.1
614,937 + GFF1350 0.21 -0.8
614,937 + GFF1350 0.21 +0.5
614,937 + GFF1350 0.21 -0.8
614,938 - GFF1350 0.21 -1.7
614,938 - GFF1350 0.21 +0.3
614,938 - GFF1350 0.21 -1.1
614,938 - GFF1350 0.21 -0.1

Or see this region's nucleotide sequence