Experiment: dNMS no carbon
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1342 and GFF1343 are separated by 573 nucleotides GFF1343 and GFF1344 are separated by 49 nucleotides GFF1344 and GFF1345 are separated by 46 nucleotides
GFF1342 - Flagellar biosynthetic protein FlhB, at 607,684 to 608,892
GFF1342
GFF1343 - Flagellar transcriptional regulator FlhD, at 609,466 to 609,786
GFF1343
GFF1344 - Flagellar transcriptional regulator FlhC, at 609,836 to 610,402
GFF1344
GFF1345 - hypothetical protein, at 610,449 to 611,297
GFF1345
Position (kb) 609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 608.605 kb on + strand, within GFF1342 at 608.606 kb on - strand, within GFF1342 at 608.606 kb on - strand, within GFF1342 at 608.674 kb on + strand, within GFF1342 at 608.674 kb on + strand, within GFF1342 at 608.674 kb on + strand, within GFF1342 at 608.675 kb on - strand, within GFF1342 at 608.921 kb on + strand at 608.926 kb on - strand at 608.926 kb on - strand at 608.926 kb on - strand at 608.931 kb on + strand at 608.931 kb on + strand at 608.931 kb on + strand at 608.937 kb on + strand at 608.937 kb on + strand at 609.086 kb on + strand at 609.086 kb on + strand at 609.123 kb on + strand at 609.124 kb on - strand at 609.171 kb on + strand at 609.178 kb on + strand at 609.241 kb on + strand at 609.241 kb on + strand at 609.252 kb on + strand at 609.287 kb on + strand at 609.304 kb on - strand at 609.304 kb on - strand at 609.359 kb on + strand at 609.366 kb on + strand at 609.367 kb on - strand at 609.412 kb on + strand at 609.412 kb on + strand at 609.413 kb on - strand at 609.413 kb on - strand at 609.413 kb on - strand at 609.413 kb on - strand at 609.413 kb on - strand at 609.435 kb on + strand at 609.517 kb on + strand, within GFF1343 at 609.517 kb on + strand, within GFF1343 at 609.517 kb on + strand, within GFF1343 at 609.517 kb on + strand, within GFF1343 at 609.517 kb on + strand, within GFF1343 at 609.517 kb on + strand, within GFF1343 at 609.518 kb on - strand, within GFF1343 at 609.518 kb on - strand, within GFF1343 at 609.518 kb on - strand, within GFF1343 at 609.583 kb on - strand, within GFF1343 at 609.629 kb on + strand, within GFF1343 at 609.630 kb on - strand, within GFF1343 at 609.630 kb on - strand, within GFF1343 at 609.642 kb on + strand, within GFF1343 at 609.643 kb on - strand, within GFF1343 at 609.681 kb on + strand, within GFF1343 at 609.709 kb on + strand, within GFF1343 at 609.709 kb on + strand, within GFF1343 at 609.710 kb on - strand, within GFF1343 at 609.710 kb on - strand, within GFF1343 at 609.710 kb on - strand, within GFF1343 at 609.710 kb on - strand, within GFF1343 at 609.741 kb on + strand, within GFF1343 at 609.741 kb on + strand, within GFF1343 at 609.752 kb on + strand, within GFF1343 at 609.752 kb on + strand, within GFF1343 at 609.752 kb on + strand, within GFF1343 at 609.752 kb on + strand, within GFF1343 at 609.753 kb on - strand, within GFF1343 at 609.753 kb on - strand, within GFF1343 at 609.753 kb on - strand, within GFF1343 at 609.782 kb on + strand at 609.782 kb on + strand at 609.782 kb on + strand at 609.782 kb on + strand at 609.782 kb on + strand at 609.782 kb on + strand at 609.783 kb on - strand at 609.783 kb on - strand at 609.783 kb on - strand at 609.783 kb on - strand at 609.783 kb on - strand at 609.784 kb on + strand at 609.784 kb on + strand at 609.784 kb on + strand at 609.784 kb on + strand at 609.784 kb on + strand at 609.784 kb on + strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.785 kb on - strand at 609.793 kb on + strand at 609.793 kb on + strand at 609.794 kb on - strand at 609.794 kb on - strand at 609.794 kb on - strand at 609.794 kb on - strand at 609.833 kb on - strand at 609.852 kb on + strand at 609.852 kb on + strand at 609.852 kb on + strand at 609.852 kb on + strand at 609.852 kb on + strand at 609.853 kb on - strand at 609.853 kb on - strand at 609.853 kb on - strand at 609.855 kb on + strand at 609.965 kb on + strand, within GFF1344 at 609.965 kb on + strand, within GFF1344 at 609.966 kb on - strand, within GFF1344 at 610.015 kb on + strand, within GFF1344 at 610.065 kb on - strand, within GFF1344 at 610.073 kb on + strand, within GFF1344 at 610.073 kb on + strand, within GFF1344 at 610.081 kb on + strand, within GFF1344 at 610.081 kb on + strand, within GFF1344 at 610.081 kb on + strand, within GFF1344 at 610.082 kb on - strand, within GFF1344 at 610.082 kb on - strand, within GFF1344 at 610.082 kb on - strand, within GFF1344 at 610.082 kb on - strand, within GFF1344 at 610.091 kb on + strand, within GFF1344 at 610.092 kb on - strand, within GFF1344 at 610.130 kb on + strand, within GFF1344 at 610.130 kb on + strand, within GFF1344 at 610.130 kb on + strand, within GFF1344 at 610.130 kb on + strand, within GFF1344 at 610.130 kb on + strand, within GFF1344 at 610.132 kb on + strand, within GFF1344 at 610.132 kb on + strand, within GFF1344 at 610.132 kb on + strand, within GFF1344 at 610.132 kb on + strand, within GFF1344 at 610.133 kb on - strand, within GFF1344 at 610.133 kb on - strand, within GFF1344 at 610.133 kb on - strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.139 kb on + strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.140 kb on - strand, within GFF1344 at 610.141 kb on + strand, within GFF1344 at 610.141 kb on + strand, within GFF1344 at 610.141 kb on + strand, within GFF1344 at 610.142 kb on - strand, within GFF1344 at 610.142 kb on - strand, within GFF1344 at 610.142 kb on - strand, within GFF1344 at 610.152 kb on + strand, within GFF1344 at 610.152 kb on + strand, within GFF1344 at 610.152 kb on + strand, within GFF1344 at 610.152 kb on + strand, within GFF1344 at 610.152 kb on + strand, within GFF1344 at 610.153 kb on - strand, within GFF1344 at 610.153 kb on - strand, within GFF1344 at 610.218 kb on + strand, within GFF1344 at 610.218 kb on + strand, within GFF1344 at 610.218 kb on + strand, within GFF1344 at 610.219 kb on - strand, within GFF1344 at 610.219 kb on - strand, within GFF1344 at 610.225 kb on + strand, within GFF1344 at 610.249 kb on + strand, within GFF1344 at 610.249 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.277 kb on + strand, within GFF1344 at 610.278 kb on - strand, within GFF1344 at 610.278 kb on - strand, within GFF1344 at 610.278 kb on - strand, within GFF1344 at 610.278 kb on - strand, within GFF1344 at 610.278 kb on - strand, within GFF1344 at 610.278 kb on - strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.288 kb on + strand, within GFF1344 at 610.289 kb on - strand, within GFF1344 at 610.289 kb on - strand, within GFF1344 at 610.289 kb on - strand, within GFF1344 at 610.289 kb on - strand, within GFF1344 at 610.292 kb on + strand, within GFF1344 at 610.293 kb on - strand, within GFF1344 at 610.293 kb on - strand, within GFF1344 at 610.293 kb on - strand, within GFF1344 at 610.293 kb on - strand, within GFF1344 at 610.293 kb on - strand, within GFF1344 at 610.310 kb on + strand, within GFF1344 at 610.310 kb on + strand, within GFF1344 at 610.310 kb on + strand, within GFF1344 at 610.310 kb on + strand, within GFF1344 at 610.310 kb on + strand, within GFF1344 at 610.311 kb on - strand, within GFF1344 at 610.311 kb on - strand, within GFF1344 at 610.311 kb on - strand, within GFF1344 at 610.311 kb on - strand, within GFF1344 at 610.311 kb on - strand, within GFF1344 at 610.311 kb on - strand, within GFF1344 at 610.376 kb on + strand at 610.377 kb on - strand at 610.377 kb on - strand at 610.510 kb on + strand at 610.537 kb on + strand, within GFF1345 at 610.538 kb on - strand, within GFF1345 at 610.556 kb on + strand, within GFF1345 at 610.556 kb on + strand, within GFF1345 at 610.556 kb on + strand, within GFF1345 at 610.556 kb on + strand, within GFF1345 at 610.558 kb on + strand, within GFF1345 at 610.558 kb on + strand, within GFF1345 at 610.558 kb on + strand, within GFF1345 at 610.558 kb on + strand, within GFF1345 at 610.558 kb on + strand, within GFF1345 at 610.558 kb on + strand, within GFF1345 at 610.559 kb on - strand, within GFF1345 at 610.559 kb on - strand, within GFF1345 at 610.559 kb on - strand, within GFF1345 at 610.600 kb on + strand, within GFF1345 at 610.601 kb on - strand, within GFF1345 at 610.615 kb on + strand, within GFF1345 at 610.616 kb on - strand, within GFF1345 at 610.667 kb on + strand, within GFF1345 at 610.667 kb on + strand, within GFF1345 at 610.667 kb on + strand, within GFF1345 at 610.668 kb on - strand, within GFF1345 at 610.766 kb on + strand, within GFF1345 at 610.766 kb on + strand, within GFF1345 at 610.766 kb on + strand, within GFF1345 at 610.766 kb on + strand, within GFF1345 at 610.767 kb on - strand, within GFF1345 at 610.767 kb on - strand, within GFF1345 at 610.767 kb on - strand, within GFF1345 at 610.767 kb on - strand, within GFF1345 at 610.767 kb on - strand, within GFF1345 at 610.769 kb on + strand, within GFF1345 at 610.769 kb on + strand, within GFF1345 at 610.770 kb on - strand, within GFF1345 at 610.770 kb on - strand, within GFF1345 at 610.770 kb on - strand, within GFF1345 at 610.770 kb on - strand, within GFF1345
Per-strain Table
Position Strand Gene LocusTag Fraction dNMS no carbon remove 608,605 + GFF1342 0.76 -0.9 608,606 - GFF1342 0.76 -0.1 608,606 - GFF1342 0.76 -1.3 608,674 + GFF1342 0.82 +0.1 608,674 + GFF1342 0.82 -0.8 608,674 + GFF1342 0.82 -1.9 608,675 - GFF1342 0.82 -0.2 608,921 + -1.4 608,926 - -0.5 608,926 - +1.5 608,926 - -0.1 608,931 + -0.8 608,931 + -0.1 608,931 + -0.9 608,937 + -0.7 608,937 + -1.1 609,086 + -0.4 609,086 + +1.8 609,123 + +0.6 609,124 - -0.9 609,171 + -0.4 609,178 + -0.3 609,241 + +0.6 609,241 + -0.4 609,252 + -1.2 609,287 + -1.4 609,304 - -1.7 609,304 - +0.9 609,359 + -0.4 609,366 + +0.1 609,367 - -0.6 609,412 + -1.4 609,412 + -0.4 609,413 - -0.5 609,413 - +0.6 609,413 - -1.2 609,413 - -0.9 609,413 - -0.5 609,435 + -0.7 609,517 + GFF1343 0.16 +0.5 609,517 + GFF1343 0.16 -0.2 609,517 + GFF1343 0.16 -1.1 609,517 + GFF1343 0.16 -0.5 609,517 + GFF1343 0.16 -2.1 609,517 + GFF1343 0.16 -1.1 609,518 - GFF1343 0.16 -0.7 609,518 - GFF1343 0.16 -1.1 609,518 - GFF1343 0.16 -0.9 609,583 - GFF1343 0.36 -1.7 609,629 + GFF1343 0.51 -0.9 609,630 - GFF1343 0.51 -0.7 609,630 - GFF1343 0.51 -1.4 609,642 + GFF1343 0.55 -1.7 609,643 - GFF1343 0.55 -1.8 609,681 + GFF1343 0.67 -1.0 609,709 + GFF1343 0.76 -1.0 609,709 + GFF1343 0.76 -0.8 609,710 - GFF1343 0.76 -1.1 609,710 - GFF1343 0.76 +0.9 609,710 - GFF1343 0.76 -0.9 609,710 - GFF1343 0.76 +0.3 609,741 + GFF1343 0.86 -2.1 609,741 + GFF1343 0.86 -0.7 609,752 + GFF1343 0.89 -0.8 609,752 + GFF1343 0.89 +0.3 609,752 + GFF1343 0.89 -1.1 609,752 + GFF1343 0.89 -0.1 609,753 - GFF1343 0.89 -0.2 609,753 - GFF1343 0.89 -1.0 609,753 - GFF1343 0.89 -2.4 609,782 + -1.6 609,782 + +0.5 609,782 + -0.3 609,782 + +0.2 609,782 + -0.4 609,782 + -0.4 609,783 - -1.1 609,783 - -0.4 609,783 - -0.7 609,783 - -1.1 609,783 - -0.7 609,784 + -1.7 609,784 + -0.1 609,784 + +0.5 609,784 + -0.1 609,784 + -0.1 609,784 + -0.1 609,785 - -1.1 609,785 - -1.0 609,785 - -0.4 609,785 - -1.6 609,785 - -0.7 609,785 - -0.3 609,785 - -1.2 609,785 - -0.7 609,793 + -0.7 609,793 + -0.8 609,794 - -0.7 609,794 - +0.8 609,794 - -0.8 609,794 - -1.4 609,833 - -0.3 609,852 + -0.5 609,852 + -0.9 609,852 + +0.3 609,852 + -0.6 609,852 + -0.4 609,853 - -0.1 609,853 - +0.5 609,853 - -0.1 609,855 + -1.1 609,965 + GFF1344 0.23 -1.6 609,965 + GFF1344 0.23 -0.5 609,966 - GFF1344 0.23 -1.6 610,015 + GFF1344 0.32 -0.1 610,065 - GFF1344 0.40 -1.2 610,073 + GFF1344 0.42 -0.9 610,073 + GFF1344 0.42 -1.5 610,081 + GFF1344 0.43 -1.0 610,081 + GFF1344 0.43 -1.0 610,081 + GFF1344 0.43 +0.2 610,082 - GFF1344 0.43 -1.1 610,082 - GFF1344 0.43 -0.9 610,082 - GFF1344 0.43 -1.4 610,082 - GFF1344 0.43 +0.5 610,091 + GFF1344 0.45 -1.1 610,092 - GFF1344 0.45 -1.7 610,130 + GFF1344 0.52 -0.1 610,130 + GFF1344 0.52 -1.7 610,130 + GFF1344 0.52 -2.4 610,130 + GFF1344 0.52 -1.9 610,130 + GFF1344 0.52 +0.7 610,132 + GFF1344 0.52 -0.7 610,132 + GFF1344 0.52 -0.9 610,132 + GFF1344 0.52 -0.7 610,132 + GFF1344 0.52 -1.5 610,133 - GFF1344 0.52 -0.5 610,133 - GFF1344 0.52 -1.5 610,133 - GFF1344 0.52 -1.7 610,139 + GFF1344 0.53 -0.7 610,139 + GFF1344 0.53 -1.1 610,139 + GFF1344 0.53 -0.3 610,139 + GFF1344 0.53 -0.2 610,139 + GFF1344 0.53 -0.6 610,139 + GFF1344 0.53 -0.9 610,139 + GFF1344 0.53 -0.6 610,139 + GFF1344 0.53 +0.2 610,139 + GFF1344 0.53 -1.7 610,139 + GFF1344 0.53 -0.5 610,139 + GFF1344 0.53 -0.1 610,139 + GFF1344 0.53 -1.0 610,139 + GFF1344 0.53 -0.4 610,140 - GFF1344 0.54 +0.3 610,140 - GFF1344 0.54 -0.1 610,140 - GFF1344 0.54 -1.2 610,140 - GFF1344 0.54 -0.6 610,140 - GFF1344 0.54 -0.9 610,140 - GFF1344 0.54 +0.3 610,140 - GFF1344 0.54 -0.1 610,140 - GFF1344 0.54 -1.2 610,141 + GFF1344 0.54 -0.3 610,141 + GFF1344 0.54 -1.4 610,141 + GFF1344 0.54 -0.3 610,142 - GFF1344 0.54 -2.5 610,142 - GFF1344 0.54 -0.1 610,142 - GFF1344 0.54 -0.9 610,152 + GFF1344 0.56 -1.2 610,152 + GFF1344 0.56 -3.0 610,152 + GFF1344 0.56 -0.7 610,152 + GFF1344 0.56 -1.4 610,152 + GFF1344 0.56 -1.1 610,153 - GFF1344 0.56 -0.7 610,153 - GFF1344 0.56 -0.7 610,218 + GFF1344 0.67 +0.1 610,218 + GFF1344 0.67 -1.7 610,218 + GFF1344 0.67 -1.7 610,219 - GFF1344 0.68 -1.2 610,219 - GFF1344 0.68 -0.5 610,225 + GFF1344 0.69 -0.9 610,249 + GFF1344 0.73 -0.8 610,249 + GFF1344 0.73 -2.6 610,277 + GFF1344 0.78 -1.4 610,277 + GFF1344 0.78 -1.3 610,277 + GFF1344 0.78 -1.0 610,277 + GFF1344 0.78 -0.6 610,277 + GFF1344 0.78 -1.1 610,277 + GFF1344 0.78 -0.3 610,277 + GFF1344 0.78 -1.5 610,277 + GFF1344 0.78 +0.1 610,277 + GFF1344 0.78 -1.0 610,277 + GFF1344 0.78 -0.9 610,277 + GFF1344 0.78 -0.6 610,278 - GFF1344 0.78 -1.9 610,278 - GFF1344 0.78 -0.4 610,278 - GFF1344 0.78 -0.7 610,278 - GFF1344 0.78 -0.1 610,278 - GFF1344 0.78 -0.7 610,278 - GFF1344 0.78 -0.1 610,288 + GFF1344 0.80 -1.4 610,288 + GFF1344 0.80 -0.3 610,288 + GFF1344 0.80 -1.3 610,288 + GFF1344 0.80 -2.2 610,288 + GFF1344 0.80 -0.3 610,288 + GFF1344 0.80 -1.1 610,288 + GFF1344 0.80 -0.9 610,289 - GFF1344 0.80 -1.8 610,289 - GFF1344 0.80 -0.7 610,289 - GFF1344 0.80 +0.3 610,289 - GFF1344 0.80 -0.6 610,292 + GFF1344 0.80 +0.7 610,293 - GFF1344 0.81 -0.8 610,293 - GFF1344 0.81 -0.7 610,293 - GFF1344 0.81 -2.9 610,293 - GFF1344 0.81 -1.3 610,293 - GFF1344 0.81 -2.1 610,310 + GFF1344 0.84 -1.6 610,310 + GFF1344 0.84 -0.6 610,310 + GFF1344 0.84 -2.4 610,310 + GFF1344 0.84 -0.8 610,310 + GFF1344 0.84 -0.5 610,311 - GFF1344 0.84 -2.2 610,311 - GFF1344 0.84 -1.0 610,311 - GFF1344 0.84 -0.5 610,311 - GFF1344 0.84 -0.7 610,311 - GFF1344 0.84 -0.3 610,311 - GFF1344 0.84 -1.4 610,376 + +0.9 610,377 - -0.3 610,377 - -0.1 610,510 + -1.5 610,537 + GFF1345 0.10 +0.5 610,538 - GFF1345 0.10 -0.7 610,556 + GFF1345 0.13 -0.3 610,556 + GFF1345 0.13 -0.9 610,556 + GFF1345 0.13 -0.9 610,556 + GFF1345 0.13 -1.1 610,558 + GFF1345 0.13 -0.9 610,558 + GFF1345 0.13 +0.2 610,558 + GFF1345 0.13 +0.1 610,558 + GFF1345 0.13 -0.8 610,558 + GFF1345 0.13 -1.9 610,558 + GFF1345 0.13 +0.1 610,559 - GFF1345 0.13 -0.1 610,559 - GFF1345 0.13 +0.9 610,559 - GFF1345 0.13 -1.9 610,600 + GFF1345 0.18 +0.1 610,601 - GFF1345 0.18 -1.1 610,615 + GFF1345 0.20 -0.3 610,616 - GFF1345 0.20 -0.9 610,667 + GFF1345 0.26 -1.3 610,667 + GFF1345 0.26 -0.9 610,667 + GFF1345 0.26 -1.1 610,668 - GFF1345 0.26 -1.5 610,766 + GFF1345 0.37 +0.0 610,766 + GFF1345 0.37 +0.2 610,766 + GFF1345 0.37 -1.9 610,766 + GFF1345 0.37 -1.1 610,767 - GFF1345 0.37 -1.1 610,767 - GFF1345 0.37 -1.3 610,767 - GFF1345 0.37 -1.7 610,767 - GFF1345 0.37 -2.1 610,767 - GFF1345 0.37 -0.3 610,769 + GFF1345 0.38 -1.1 610,769 + GFF1345 0.38 -1.5 610,770 - GFF1345 0.38 -0.1 610,770 - GFF1345 0.38 -0.2 610,770 - GFF1345 0.38 -0.2 610,770 - GFF1345 0.38 -1.4
Or see this region's nucleotide sequence