Strain Fitness in Methylophilus sp. DMC18 around GFF1195

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1194 and GFF1195 are separated by 2 nucleotidesGFF1195 and GFF1196 overlap by 4 nucleotidesGFF1196 and GFF1197 are separated by 105 nucleotides GFF1194 - Formyltransferase/hydrolase complex Fhc subunit A, at 445,834 to 447,498 GFF1194 GFF1195 - Formyltransferase/hydrolase complex subunit D, at 447,501 to 448,427 GFF1195 GFF1196 - Formyltransferase/hydrolase complex Fhc subunit C, at 448,424 to 449,095 GFF1196 GFF1197 - hypothetical protein, at 449,201 to 450,127 GFF1197 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1at 446.501 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.522 kb on + strand, within GFF1194at 446.523 kb on - strand, within GFF1194at 446.526 kb on + strand, within GFF1194at 446.526 kb on + strand, within GFF1194at 446.526 kb on + strand, within GFF1194at 446.527 kb on - strand, within GFF1194at 446.527 kb on - strand, within GFF1194at 446.553 kb on + strand, within GFF1194at 446.553 kb on + strand, within GFF1194at 446.553 kb on + strand, within GFF1194at 446.554 kb on - strand, within GFF1194at 446.556 kb on + strand, within GFF1194at 446.556 kb on + strand, within GFF1194at 446.557 kb on - strand, within GFF1194at 446.637 kb on + strand, within GFF1194at 446.654 kb on - strand, within GFF1194at 446.801 kb on + strand, within GFF1194at 446.899 kb on + strand, within GFF1194at 446.900 kb on - strand, within GFF1194at 446.936 kb on + strand, within GFF1194at 446.936 kb on + strand, within GFF1194at 446.937 kb on - strand, within GFF1194at 446.948 kb on + strand, within GFF1194at 446.948 kb on + strand, within GFF1194at 446.949 kb on - strand, within GFF1194at 447.010 kb on + strand, within GFF1194at 447.010 kb on + strand, within GFF1194at 447.131 kb on - strand, within GFF1194at 447.220 kb on - strand, within GFF1194at 447.220 kb on - strand, within GFF1194at 447.283 kb on - strand, within GFF1194at 447.432 kb on + strandat 447.480 kb on + strandat 447.486 kb on + strandat 447.500 kb on + strandat 447.501 kb on - strandat 447.508 kb on + strandat 447.508 kb on + strandat 447.509 kb on - strandat 447.509 kb on - strandat 447.523 kb on + strandat 447.548 kb on + strandat 447.548 kb on + strandat 447.548 kb on + strandat 447.548 kb on + strandat 447.549 kb on - strandat 447.549 kb on - strandat 447.551 kb on + strandat 447.566 kb on + strandat 447.575 kb on + strandat 447.600 kb on + strand, within GFF1195at 447.600 kb on + strand, within GFF1195at 447.600 kb on + strand, within GFF1195at 447.600 kb on + strand, within GFF1195at 447.602 kb on + strand, within GFF1195at 447.602 kb on + strand, within GFF1195at 447.603 kb on - strand, within GFF1195at 447.716 kb on + strand, within GFF1195at 447.717 kb on - strand, within GFF1195at 447.717 kb on - strand, within GFF1195at 447.936 kb on - strand, within GFF1195at 447.961 kb on + strand, within GFF1195at 448.094 kb on + strand, within GFF1195at 448.094 kb on + strand, within GFF1195at 448.166 kb on + strand, within GFF1195at 448.193 kb on + strand, within GFF1195at 448.343 kb on + strandat 448.344 kb on - strandat 448.344 kb on - strandat 448.356 kb on - strandat 448.359 kb on + strandat 448.437 kb on + strandat 448.437 kb on + strandat 448.437 kb on + strandat 448.438 kb on - strandat 448.438 kb on - strandat 448.438 kb on - strandat 448.600 kb on + strand, within GFF1196at 448.600 kb on + strand, within GFF1196at 448.600 kb on + strand, within GFF1196at 448.601 kb on - strand, within GFF1196at 448.601 kb on - strand, within GFF1196at 448.637 kb on + strand, within GFF1196at 448.637 kb on + strand, within GFF1196at 448.637 kb on + strand, within GFF1196at 448.637 kb on + strand, within GFF1196at 448.638 kb on - strand, within GFF1196at 448.638 kb on - strand, within GFF1196at 448.765 kb on + strand, within GFF1196at 448.808 kb on + strand, within GFF1196at 448.808 kb on + strand, within GFF1196at 448.809 kb on - strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.863 kb on + strand, within GFF1196at 448.864 kb on - strand, within GFF1196at 448.864 kb on - strand, within GFF1196at 448.864 kb on - strand, within GFF1196at 448.865 kb on + strand, within GFF1196at 448.865 kb on + strand, within GFF1196at 448.865 kb on + strand, within GFF1196at 448.896 kb on + strand, within GFF1196at 448.969 kb on + strand, within GFF1196at 448.970 kb on - strand, within GFF1196at 448.970 kb on - strand, within GFF1196at 448.978 kb on + strand, within GFF1196at 449.065 kb on + strandat 449.077 kb on - strandat 449.094 kb on - strandat 449.158 kb on + strandat 449.159 kb on - strandat 449.210 kb on + strandat 449.210 kb on + strandat 449.210 kb on + strandat 449.210 kb on + strandat 449.211 kb on - strandat 449.229 kb on - strandat 449.248 kb on + strandat 449.249 kb on - strandat 449.252 kb on + strandat 449.253 kb on - strandat 449.253 kb on - strandat 449.253 kb on - strandat 449.278 kb on - strandat 449.365 kb on + strand, within GFF1197at 449.366 kb on - strand, within GFF1197at 449.384 kb on + strand, within GFF1197at 449.384 kb on + strand, within GFF1197at 449.384 kb on + strand, within GFF1197at 449.384 kb on + strand, within GFF1197at 449.385 kb on - strand, within GFF1197at 449.385 kb on - strand, within GFF1197

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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446,501 + GFF1194 0.40 -0.1
446,522 + GFF1194 0.41 -1.1
446,522 + GFF1194 0.41 +0.3
446,522 + GFF1194 0.41 -2.2
446,522 + GFF1194 0.41 -0.1
446,522 + GFF1194 0.41 -1.8
446,523 - GFF1194 0.41 -1.4
446,526 + GFF1194 0.42 -1.4
446,526 + GFF1194 0.42 -0.7
446,526 + GFF1194 0.42 -0.4
446,527 - GFF1194 0.42 -0.9
446,527 - GFF1194 0.42 -0.4
446,553 + GFF1194 0.43 -2.2
446,553 + GFF1194 0.43 -0.7
446,553 + GFF1194 0.43 -0.1
446,554 - GFF1194 0.43 -0.7
446,556 + GFF1194 0.43 -1.5
446,556 + GFF1194 0.43 -2.1
446,557 - GFF1194 0.43 -1.1
446,637 + GFF1194 0.48 -1.5
446,654 - GFF1194 0.49 -0.9
446,801 + GFF1194 0.58 -1.9
446,899 + GFF1194 0.64 +0.3
446,900 - GFF1194 0.64 +0.5
446,936 + GFF1194 0.66 +0.2
446,936 + GFF1194 0.66 -1.1
446,937 - GFF1194 0.66 -0.7
446,948 + GFF1194 0.67 -2.2
446,948 + GFF1194 0.67 -0.5
446,949 - GFF1194 0.67 -0.7
447,010 + GFF1194 0.71 +0.1
447,010 + GFF1194 0.71 -1.9
447,131 - GFF1194 0.78 -0.7
447,220 - GFF1194 0.83 -1.7
447,220 - GFF1194 0.83 +0.6
447,283 - GFF1194 0.87 -1.9
447,432 + -0.8
447,480 + -0.8
447,486 + -0.5
447,500 + -1.4
447,501 - -2.0
447,508 + -1.1
447,508 + +1.5
447,509 - -1.2
447,509 - +0.3
447,523 + -2.5
447,548 + -0.6
447,548 + -0.7
447,548 + +0.3
447,548 + -1.4
447,549 - -1.5
447,549 - -0.9
447,551 + +0.5
447,566 + -0.1
447,575 + -1.1
447,600 + GFF1195 0.11 -1.4
447,600 + GFF1195 0.11 +0.3
447,600 + GFF1195 0.11 -0.1
447,600 + GFF1195 0.11 -0.2
447,602 + GFF1195 0.11 -0.1
447,602 + GFF1195 0.11 -0.1
447,603 - GFF1195 0.11 +0.3
447,716 + GFF1195 0.23 -2.1
447,717 - GFF1195 0.23 -0.1
447,717 - GFF1195 0.23 -0.4
447,936 - GFF1195 0.47 +0.1
447,961 + GFF1195 0.50 -0.4
448,094 + GFF1195 0.64 -0.4
448,094 + GFF1195 0.64 -1.9
448,166 + GFF1195 0.72 -1.7
448,193 + GFF1195 0.75 -1.3
448,343 + -1.2
448,344 - +0.5
448,344 - -0.1
448,356 - -1.2
448,359 + -1.1
448,437 + -1.1
448,437 + -0.1
448,437 + -0.4
448,438 - -1.4
448,438 - +0.3
448,438 - -1.9
448,600 + GFF1196 0.26 -0.1
448,600 + GFF1196 0.26 -1.5
448,600 + GFF1196 0.26 -1.1
448,601 - GFF1196 0.26 -1.1
448,601 - GFF1196 0.26 -0.9
448,637 + GFF1196 0.32 -1.8
448,637 + GFF1196 0.32 +0.9
448,637 + GFF1196 0.32 -1.1
448,637 + GFF1196 0.32 -1.9
448,638 - GFF1196 0.32 +1.2
448,638 - GFF1196 0.32 -1.1
448,765 + GFF1196 0.51 -0.7
448,808 + GFF1196 0.57 +0.1
448,808 + GFF1196 0.57 -1.5
448,809 - GFF1196 0.57 -2.0
448,863 + GFF1196 0.65 -1.7
448,863 + GFF1196 0.65 -1.7
448,863 + GFF1196 0.65 -1.8
448,863 + GFF1196 0.65 -1.2
448,863 + GFF1196 0.65 -1.8
448,863 + GFF1196 0.65 -1.9
448,863 + GFF1196 0.65 -0.5
448,863 + GFF1196 0.65 -0.7
448,863 + GFF1196 0.65 +0.1
448,863 + GFF1196 0.65 -0.7
448,863 + GFF1196 0.65 -0.9
448,863 + GFF1196 0.65 -1.4
448,863 + GFF1196 0.65 -0.5
448,864 - GFF1196 0.65 -1.3
448,864 - GFF1196 0.65 -1.7
448,864 - GFF1196 0.65 -0.1
448,865 + GFF1196 0.66 -0.1
448,865 + GFF1196 0.66 -1.4
448,865 + GFF1196 0.66 -0.7
448,896 + GFF1196 0.70 -0.7
448,969 + GFF1196 0.81 -0.7
448,970 - GFF1196 0.81 -1.1
448,970 - GFF1196 0.81 -1.1
448,978 + GFF1196 0.82 -1.1
449,065 + -1.9
449,077 - -1.2
449,094 - -0.4
449,158 + -1.2
449,159 - -1.9
449,210 + -0.5
449,210 + -1.9
449,210 + -0.4
449,210 + +0.1
449,211 - -0.4
449,229 - -1.1
449,248 + -0.3
449,249 - -1.9
449,252 + -0.5
449,253 - -1.7
449,253 - -0.1
449,253 - +0.3
449,278 - -1.5
449,365 + GFF1197 0.18 -0.5
449,366 - GFF1197 0.18 -2.5
449,384 + GFF1197 0.20 +0.2
449,384 + GFF1197 0.20 -0.4
449,384 + GFF1197 0.20 -0.2
449,384 + GFF1197 0.20 -1.7
449,385 - GFF1197 0.20 -2.0
449,385 - GFF1197 0.20 -0.2

Or see this region's nucleotide sequence