Experiment: MHII; 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS04060 and RR41_RS04065 are separated by 14 nucleotides RR41_RS04065 and RR41_RS19205 are separated by 424 nucleotides
RR41_RS04060: RR41_RS04060 - ADP-forming succinate--CoA ligase subunit beta, at 832,811 to 833,977
_RS04060
RR41_RS04065: RR41_RS04065 - succinate--CoA ligase subunit alpha, at 833,992 to 834,882
_RS04065
RR41_RS19205: RR41_RS19205 - IS4-like element ISAba1 family transposase, at 835,307 to 836,397
_RS19205
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 833.055 kb on + strand, within RR41_RS04060 at 833.061 kb on - strand, within RR41_RS04060 at 833.089 kb on - strand, within RR41_RS04060 at 833.115 kb on + strand, within RR41_RS04060 at 833.115 kb on + strand, within RR41_RS04060 at 833.155 kb on - strand, within RR41_RS04060 at 833.191 kb on + strand, within RR41_RS04060 at 833.278 kb on - strand, within RR41_RS04060 at 833.408 kb on - strand, within RR41_RS04060 at 833.443 kb on - strand, within RR41_RS04060 at 833.448 kb on + strand, within RR41_RS04060 at 833.460 kb on + strand, within RR41_RS04060 at 833.461 kb on - strand, within RR41_RS04060 at 833.461 kb on - strand, within RR41_RS04060 at 833.474 kb on - strand, within RR41_RS04060 at 833.564 kb on - strand, within RR41_RS04060 at 833.567 kb on + strand, within RR41_RS04060 at 833.568 kb on - strand, within RR41_RS04060 at 833.577 kb on + strand, within RR41_RS04060 at 833.578 kb on - strand, within RR41_RS04060 at 833.584 kb on + strand, within RR41_RS04060 at 833.630 kb on - strand, within RR41_RS04060 at 833.738 kb on - strand, within RR41_RS04060 at 833.866 kb on + strand at 833.881 kb on - strand at 834.003 kb on - strand at 834.023 kb on + strand at 834.109 kb on - strand, within RR41_RS04065 at 834.144 kb on - strand, within RR41_RS04065 at 834.200 kb on + strand, within RR41_RS04065 at 834.205 kb on + strand, within RR41_RS04065 at 834.209 kb on + strand, within RR41_RS04065 at 834.326 kb on + strand, within RR41_RS04065 at 834.396 kb on + strand, within RR41_RS04065 at 834.409 kb on - strand, within RR41_RS04065 at 834.496 kb on - strand, within RR41_RS04065 at 834.496 kb on - strand, within RR41_RS04065 at 834.552 kb on + strand, within RR41_RS04065 at 834.553 kb on - strand, within RR41_RS04065 at 834.679 kb on - strand, within RR41_RS04065 at 834.687 kb on - strand, within RR41_RS04065 at 834.689 kb on + strand, within RR41_RS04065 at 834.689 kb on + strand, within RR41_RS04065 at 834.695 kb on - strand, within RR41_RS04065 at 834.708 kb on - strand, within RR41_RS04065 at 834.730 kb on - strand, within RR41_RS04065 at 834.769 kb on - strand, within RR41_RS04065 at 834.814 kb on + strand at 834.857 kb on + strand at 834.880 kb on + strand at 834.881 kb on - strand at 834.968 kb on + strand at 834.969 kb on - strand at 834.970 kb on + strand at 834.978 kb on - strand at 835.031 kb on + strand at 835.098 kb on - strand at 835.108 kb on + strand at 835.126 kb on - strand at 835.152 kb on + strand at 835.201 kb on - strand at 835.203 kb on - strand at 835.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII; 37C remove 833,055 + RR41_RS04060 0.21 +0.3 833,061 - RR41_RS04060 0.21 -1.4 833,089 - RR41_RS04060 0.24 -0.1 833,115 + RR41_RS04060 0.26 -1.1 833,115 + RR41_RS04060 0.26 -1.6 833,155 - RR41_RS04060 0.29 +1.0 833,191 + RR41_RS04060 0.33 -1.2 833,278 - RR41_RS04060 0.40 -0.1 833,408 - RR41_RS04060 0.51 +0.9 833,443 - RR41_RS04060 0.54 -2.1 833,448 + RR41_RS04060 0.55 -0.2 833,460 + RR41_RS04060 0.56 -2.1 833,461 - RR41_RS04060 0.56 -1.7 833,461 - RR41_RS04060 0.56 +0.5 833,474 - RR41_RS04060 0.57 -1.9 833,564 - RR41_RS04060 0.65 +0.0 833,567 + RR41_RS04060 0.65 -2.1 833,568 - RR41_RS04060 0.65 -1.9 833,577 + RR41_RS04060 0.66 +0.3 833,578 - RR41_RS04060 0.66 -1.9 833,584 + RR41_RS04060 0.66 -0.2 833,630 - RR41_RS04060 0.70 +0.9 833,738 - RR41_RS04060 0.79 +1.3 833,866 + -1.7 833,881 - -0.6 834,003 - -1.9 834,023 + +0.9 834,109 - RR41_RS04065 0.13 +2.9 834,144 - RR41_RS04065 0.17 -0.1 834,200 + RR41_RS04065 0.23 +1.0 834,205 + RR41_RS04065 0.24 -0.7 834,209 + RR41_RS04065 0.24 -0.3 834,326 + RR41_RS04065 0.37 -0.5 834,396 + RR41_RS04065 0.45 -0.8 834,409 - RR41_RS04065 0.47 -0.7 834,496 - RR41_RS04065 0.57 +0.1 834,496 - RR41_RS04065 0.57 -0.8 834,552 + RR41_RS04065 0.63 +0.3 834,553 - RR41_RS04065 0.63 -2.6 834,679 - RR41_RS04065 0.77 -2.3 834,687 - RR41_RS04065 0.78 -1.6 834,689 + RR41_RS04065 0.78 -0.1 834,689 + RR41_RS04065 0.78 +0.4 834,695 - RR41_RS04065 0.79 -2.4 834,708 - RR41_RS04065 0.80 -0.9 834,730 - RR41_RS04065 0.83 -0.2 834,769 - RR41_RS04065 0.87 +1.3 834,814 + -0.3 834,857 + -0.5 834,880 + -1.2 834,881 - -0.0 834,968 + +0.2 834,969 - +0.9 834,970 + -1.3 834,978 - -1.7 835,031 + +1.2 835,098 - -0.8 835,108 + -2.9 835,126 - +0.8 835,152 + -2.1 835,201 - +2.9 835,203 - -0.4 835,280 - +0.9
Or see this region's nucleotide sequence