Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06872

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06871 and MPMX19_06872 are separated by 1 nucleotidesMPMX19_06872 and MPMX19_06873 are separated by 32 nucleotides MPMX19_06871: MPMX19_06871 - Long-chain-fatty-acid--CoA ligase FadD15, at 141,628 to 143,538 _06871 MPMX19_06872: MPMX19_06872 - Short-chain-enoyl-CoA hydratase, at 143,540 to 144,328 _06872 MPMX19_06873: MPMX19_06873 - F420-dependent glucose-6-phosphate dehydrogenase, at 144,361 to 145,500 _06873 Position (kb) 143 144 145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 142.634 kb on + strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.634 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.643 kb on + strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.644 kb on - strand, within MPMX19_06871at 142.667 kb on + strand, within MPMX19_06871at 142.667 kb on + strand, within MPMX19_06871at 142.667 kb on + strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.668 kb on - strand, within MPMX19_06871at 142.725 kb on - strand, within MPMX19_06871at 142.725 kb on - strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.922 kb on + strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 142.923 kb on - strand, within MPMX19_06871at 143.165 kb on + strand, within MPMX19_06871at 143.165 kb on + strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.166 kb on - strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.195 kb on + strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.196 kb on - strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.237 kb on + strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.238 kb on - strand, within MPMX19_06871at 143.460 kb on - strandat 143.460 kb on - strandat 143.460 kb on - strandat 143.691 kb on + strand, within MPMX19_06872at 143.691 kb on + strand, within MPMX19_06872at 143.691 kb on + strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 144.310 kb on + strandat 144.310 kb on + strandat 144.311 kb on - strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.461 kb on + strandat 144.461 kb on + strandat 144.461 kb on + strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.620 kb on + strand, within MPMX19_06873at 144.620 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.678 kb on - strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.732 kb on - strand, within MPMX19_06873at 144.732 kb on - strand, within MPMX19_06873at 144.752 kb on + strand, within MPMX19_06873at 144.752 kb on + strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.986 kb on + strand, within MPMX19_06873at 145.034 kb on + strand, within MPMX19_06873at 145.175 kb on + strand, within MPMX19_06873at 145.175 kb on + strand, within MPMX19_06873at 145.176 kb on - strand, within MPMX19_06873at 145.176 kb on - strand, within MPMX19_06873at 145.311 kb on - strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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142,634 + MPMX19_06871 0.53 -0.4
142,634 + MPMX19_06871 0.53 +0.7
142,634 + MPMX19_06871 0.53 -0.4
142,634 + MPMX19_06871 0.53 -2.2
142,643 + MPMX19_06871 0.53 -1.4
142,643 + MPMX19_06871 0.53 +1.0
142,643 + MPMX19_06871 0.53 -0.6
142,643 + MPMX19_06871 0.53 -1.0
142,644 - MPMX19_06871 0.53 -1.0
142,644 - MPMX19_06871 0.53 -2.1
142,644 - MPMX19_06871 0.53 +0.6
142,644 - MPMX19_06871 0.53 -0.5
142,644 - MPMX19_06871 0.53 -1.6
142,644 - MPMX19_06871 0.53 -0.3
142,644 - MPMX19_06871 0.53 -0.6
142,644 - MPMX19_06871 0.53 -0.8
142,644 - MPMX19_06871 0.53 -1.1
142,644 - MPMX19_06871 0.53 -0.6
142,644 - MPMX19_06871 0.53 +0.9
142,667 + MPMX19_06871 0.54 -1.4
142,667 + MPMX19_06871 0.54 -1.3
142,667 + MPMX19_06871 0.54 +0.1
142,668 - MPMX19_06871 0.54 -2.9
142,668 - MPMX19_06871 0.54 +0.4
142,668 - MPMX19_06871 0.54 -0.4
142,668 - MPMX19_06871 0.54 +0.1
142,668 - MPMX19_06871 0.54 -3.9
142,725 - MPMX19_06871 0.57 -1.0
142,725 - MPMX19_06871 0.57 +0.0
142,922 + MPMX19_06871 0.68 -0.2
142,922 + MPMX19_06871 0.68 +0.1
142,922 + MPMX19_06871 0.68 -0.4
142,922 + MPMX19_06871 0.68 -0.5
142,923 - MPMX19_06871 0.68 -1.3
142,923 - MPMX19_06871 0.68 +1.6
142,923 - MPMX19_06871 0.68 -0.6
142,923 - MPMX19_06871 0.68 +0.1
143,165 + MPMX19_06871 0.80 -0.5
143,165 + MPMX19_06871 0.80 -1.1
143,166 - MPMX19_06871 0.80 +0.3
143,166 - MPMX19_06871 0.80 -1.0
143,166 - MPMX19_06871 0.80 -0.1
143,166 - MPMX19_06871 0.80 -2.2
143,195 + MPMX19_06871 0.82 -0.4
143,195 + MPMX19_06871 0.82 -1.6
143,195 + MPMX19_06871 0.82 -0.8
143,195 + MPMX19_06871 0.82 -1.3
143,196 - MPMX19_06871 0.82 +0.2
143,196 - MPMX19_06871 0.82 -0.7
143,196 - MPMX19_06871 0.82 -2.6
143,196 - MPMX19_06871 0.82 -0.5
143,237 + MPMX19_06871 0.84 +0.2
143,237 + MPMX19_06871 0.84 -1.7
143,237 + MPMX19_06871 0.84 +0.4
143,237 + MPMX19_06871 0.84 -1.1
143,237 + MPMX19_06871 0.84 -0.3
143,238 - MPMX19_06871 0.84 -2.5
143,238 - MPMX19_06871 0.84 -0.6
143,238 - MPMX19_06871 0.84 -1.0
143,238 - MPMX19_06871 0.84 -0.3
143,238 - MPMX19_06871 0.84 +0.4
143,238 - MPMX19_06871 0.84 +0.7
143,238 - MPMX19_06871 0.84 -1.4
143,238 - MPMX19_06871 0.84 -1.4
143,460 - -0.5
143,460 - +0.3
143,460 - +0.4
143,691 + MPMX19_06872 0.19 -1.0
143,691 + MPMX19_06872 0.19 -0.0
143,691 + MPMX19_06872 0.19 -0.5
143,692 - MPMX19_06872 0.19 +0.6
143,692 - MPMX19_06872 0.19 +0.9
143,692 - MPMX19_06872 0.19 -0.1
143,692 - MPMX19_06872 0.19 -1.6
143,692 - MPMX19_06872 0.19 -0.0
143,844 + MPMX19_06872 0.39 +0.9
143,844 + MPMX19_06872 0.39 -0.4
143,844 + MPMX19_06872 0.39 -0.0
143,844 + MPMX19_06872 0.39 -1.0
143,845 - MPMX19_06872 0.39 -2.0
143,845 - MPMX19_06872 0.39 +0.1
143,845 - MPMX19_06872 0.39 +0.1
143,845 - MPMX19_06872 0.39 -0.4
143,845 - MPMX19_06872 0.39 +0.9
143,845 - MPMX19_06872 0.39 -1.1
144,310 + -0.7
144,310 + -0.0
144,311 - +0.3
144,312 + -0.6
144,312 + -0.5
144,312 + +0.4
144,312 + -1.5
144,313 - -1.4
144,313 - -0.6
144,313 - -1.9
144,313 - +0.0
144,313 - +0.6
144,461 + +0.1
144,461 + +0.9
144,461 + -1.5
144,462 - -1.6
144,462 - -2.8
144,462 - -0.4
144,462 - -0.5
144,620 + MPMX19_06873 0.23 +0.3
144,620 + MPMX19_06873 0.23 +0.8
144,671 + MPMX19_06873 0.27 +0.3
144,671 + MPMX19_06873 0.27 -1.0
144,671 + MPMX19_06873 0.27 -1.1
144,671 + MPMX19_06873 0.27 +0.3
144,671 + MPMX19_06873 0.27 +0.6
144,671 + MPMX19_06873 0.27 -1.0
144,672 - MPMX19_06873 0.27 +0.9
144,672 - MPMX19_06873 0.27 +0.1
144,672 - MPMX19_06873 0.27 -1.2
144,672 - MPMX19_06873 0.27 -0.7
144,672 - MPMX19_06873 0.27 -0.1
144,672 - MPMX19_06873 0.27 -0.3
144,672 - MPMX19_06873 0.27 +0.3
144,677 + MPMX19_06873 0.28 +0.4
144,677 + MPMX19_06873 0.28 -0.1
144,677 + MPMX19_06873 0.28 -0.5
144,677 + MPMX19_06873 0.28 +1.4
144,678 - MPMX19_06873 0.28 -0.7
144,731 + MPMX19_06873 0.32 -0.6
144,731 + MPMX19_06873 0.32 +0.6
144,731 + MPMX19_06873 0.32 +0.1
144,731 + MPMX19_06873 0.32 -0.9
144,732 - MPMX19_06873 0.33 -0.2
144,732 - MPMX19_06873 0.33 +0.3
144,752 + MPMX19_06873 0.34 +0.4
144,752 + MPMX19_06873 0.34 -1.0
144,753 - MPMX19_06873 0.34 +0.6
144,753 - MPMX19_06873 0.34 -1.2
144,753 - MPMX19_06873 0.34 -1.8
144,753 - MPMX19_06873 0.34 +0.1
144,900 - MPMX19_06873 0.47 -0.4
144,900 - MPMX19_06873 0.47 -1.0
144,900 - MPMX19_06873 0.47 -0.1
144,986 + MPMX19_06873 0.55 +0.4
145,034 + MPMX19_06873 0.59 +0.1
145,175 + MPMX19_06873 0.71 -0.0
145,175 + MPMX19_06873 0.71 -0.6
145,176 - MPMX19_06873 0.71 +0.0
145,176 - MPMX19_06873 0.71 -0.8
145,311 - MPMX19_06873 0.83 -2.6
145,316 + MPMX19_06873 0.84 -1.1
145,316 + MPMX19_06873 0.84 -0.4
145,316 + MPMX19_06873 0.84 -0.3
145,317 - MPMX19_06873 0.84 -1.0
145,317 - MPMX19_06873 0.84 +0.6
145,317 - MPMX19_06873 0.84 -0.1
145,317 - MPMX19_06873 0.84 +0.3

Or see this region's nucleotide sequence