Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06746

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06745 and MPMX19_06746 are separated by 82 nucleotidesMPMX19_06746 and MPMX19_06747 overlap by 4 nucleotidesMPMX19_06747 and MPMX19_06748 are separated by 3 nucleotides MPMX19_06745: MPMX19_06745 - hypothetical protein, at 9,382 to 11,610 _06745 MPMX19_06746: MPMX19_06746 - Chemotaxis protein CheW, at 11,693 to 12,223 _06746 MPMX19_06747: MPMX19_06747 - Chemotaxis protein methyltransferase, at 12,220 to 13,107 _06747 MPMX19_06748: MPMX19_06748 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 13,111 to 14,235 _06748 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1at 11.368 kb on + strand, within MPMX19_06745at 11.369 kb on - strand, within MPMX19_06745at 11.369 kb on - strand, within MPMX19_06745at 11.369 kb on - strand, within MPMX19_06745at 11.369 kb on - strand, within MPMX19_06745at 11.597 kb on - strandat 11.729 kb on + strandat 11.729 kb on + strandat 11.729 kb on + strandat 11.729 kb on + strandat 11.729 kb on + strandat 11.730 kb on - strandat 11.730 kb on - strandat 11.730 kb on - strandat 11.766 kb on + strand, within MPMX19_06746at 11.766 kb on + strand, within MPMX19_06746at 11.767 kb on - strand, within MPMX19_06746at 12.421 kb on + strand, within MPMX19_06747at 12.421 kb on + strand, within MPMX19_06747at 12.422 kb on - strand, within MPMX19_06747at 12.422 kb on - strand, within MPMX19_06747at 12.422 kb on - strand, within MPMX19_06747at 12.422 kb on - strand, within MPMX19_06747at 12.640 kb on + strand, within MPMX19_06747at 12.640 kb on + strand, within MPMX19_06747at 12.640 kb on + strand, within MPMX19_06747at 12.640 kb on + strand, within MPMX19_06747at 12.641 kb on - strand, within MPMX19_06747at 12.641 kb on - strand, within MPMX19_06747at 12.641 kb on - strand, within MPMX19_06747at 12.641 kb on - strand, within MPMX19_06747at 12.715 kb on - strand, within MPMX19_06747at 12.715 kb on - strand, within MPMX19_06747at 12.715 kb on - strand, within MPMX19_06747at 12.802 kb on + strand, within MPMX19_06747at 12.803 kb on - strand, within MPMX19_06747at 12.803 kb on - strand, within MPMX19_06747at 12.803 kb on - strand, within MPMX19_06747at 12.904 kb on + strand, within MPMX19_06747at 12.955 kb on + strand, within MPMX19_06747at 12.956 kb on - strand, within MPMX19_06747at 12.956 kb on - strand, within MPMX19_06747

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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11,368 + MPMX19_06745 0.89 -0.6
11,369 - MPMX19_06745 0.89 -0.9
11,369 - MPMX19_06745 0.89 -0.5
11,369 - MPMX19_06745 0.89 -2.0
11,369 - MPMX19_06745 0.89 -0.6
11,597 - +0.4
11,729 + +0.4
11,729 + +0.4
11,729 + +0.6
11,729 + -1.5
11,729 + -0.6
11,730 - -0.7
11,730 - -1.1
11,730 - -1.5
11,766 + MPMX19_06746 0.14 -0.8
11,766 + MPMX19_06746 0.14 +0.4
11,767 - MPMX19_06746 0.14 -1.3
12,421 + MPMX19_06747 0.23 -1.5
12,421 + MPMX19_06747 0.23 +0.6
12,422 - MPMX19_06747 0.23 -0.9
12,422 - MPMX19_06747 0.23 -1.1
12,422 - MPMX19_06747 0.23 +1.4
12,422 - MPMX19_06747 0.23 +0.9
12,640 + MPMX19_06747 0.47 -0.5
12,640 + MPMX19_06747 0.47 -0.8
12,640 + MPMX19_06747 0.47 -0.5
12,640 + MPMX19_06747 0.47 +1.2
12,641 - MPMX19_06747 0.47 -0.9
12,641 - MPMX19_06747 0.47 -1.6
12,641 - MPMX19_06747 0.47 -0.7
12,641 - MPMX19_06747 0.47 -0.8
12,715 - MPMX19_06747 0.56 +0.4
12,715 - MPMX19_06747 0.56 -0.8
12,715 - MPMX19_06747 0.56 -0.6
12,802 + MPMX19_06747 0.66 +1.3
12,803 - MPMX19_06747 0.66 +0.4
12,803 - MPMX19_06747 0.66 +0.0
12,803 - MPMX19_06747 0.66 +0.4
12,904 + MPMX19_06747 0.77 -1.0
12,955 + MPMX19_06747 0.83 -0.6
12,956 - MPMX19_06747 0.83 -0.1
12,956 - MPMX19_06747 0.83 +0.6

Or see this region's nucleotide sequence