Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06075

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06074 and MPMX19_06075 are separated by 211 nucleotidesMPMX19_06075 and MPMX19_06076 overlap by 1 nucleotidesMPMX19_06076 and MPMX19_06077 are separated by 35 nucleotides MPMX19_06074: MPMX19_06074 - Ureidoglycolate lyase, at 243,308 to 244,150 _06074 MPMX19_06075: MPMX19_06075 - HTH-type transcriptional regulator HexR, at 244,362 to 245,288 _06075 MPMX19_06076: MPMX19_06076 - KHG/KDPG aldolase, at 245,288 to 245,941 _06076 MPMX19_06077: MPMX19_06077 - Sensor histidine kinase RcsC, at 245,977 to 249,438 _06077 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.474 kb on + strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.475 kb on - strand, within MPMX19_06074at 243.486 kb on + strand, within MPMX19_06074at 243.486 kb on + strand, within MPMX19_06074at 243.498 kb on + strand, within MPMX19_06074at 243.498 kb on + strand, within MPMX19_06074at 243.499 kb on - strand, within MPMX19_06074at 243.499 kb on - strand, within MPMX19_06074at 243.499 kb on - strand, within MPMX19_06074at 243.528 kb on + strand, within MPMX19_06074at 243.702 kb on + strand, within MPMX19_06074at 243.703 kb on - strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.741 kb on + strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 243.742 kb on - strand, within MPMX19_06074at 244.167 kb on + strandat 244.168 kb on - strandat 244.168 kb on - strandat 244.229 kb on + strandat 244.229 kb on + strandat 244.229 kb on + strandat 244.229 kb on + strandat 244.252 kb on + strandat 244.252 kb on + strandat 244.252 kb on + strandat 244.253 kb on - strandat 244.317 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
243,474 + MPMX19_06074 0.20 -1.7
243,474 + MPMX19_06074 0.20 +0.0
243,474 + MPMX19_06074 0.20 -0.7
243,474 + MPMX19_06074 0.20 -1.0
243,474 + MPMX19_06074 0.20 -0.8
243,474 + MPMX19_06074 0.20 -0.7
243,474 + MPMX19_06074 0.20 +0.3
243,474 + MPMX19_06074 0.20 -1.1
243,474 + MPMX19_06074 0.20 -2.7
243,474 + MPMX19_06074 0.20 -1.2
243,475 - MPMX19_06074 0.20 -1.4
243,475 - MPMX19_06074 0.20 -1.5
243,475 - MPMX19_06074 0.20 +0.0
243,475 - MPMX19_06074 0.20 -1.7
243,475 - MPMX19_06074 0.20 -2.3
243,475 - MPMX19_06074 0.20 -0.6
243,475 - MPMX19_06074 0.20 -1.4
243,475 - MPMX19_06074 0.20 -0.8
243,475 - MPMX19_06074 0.20 -1.4
243,475 - MPMX19_06074 0.20 -0.8
243,475 - MPMX19_06074 0.20 -1.8
243,486 + MPMX19_06074 0.21 +0.5
243,486 + MPMX19_06074 0.21 -0.8
243,498 + MPMX19_06074 0.23 +0.0
243,498 + MPMX19_06074 0.23 -0.7
243,499 - MPMX19_06074 0.23 -0.6
243,499 - MPMX19_06074 0.23 -1.7
243,499 - MPMX19_06074 0.23 -0.5
243,528 + MPMX19_06074 0.26 +0.0
243,702 + MPMX19_06074 0.47 +0.9
243,703 - MPMX19_06074 0.47 -1.3
243,741 + MPMX19_06074 0.51 -1.8
243,741 + MPMX19_06074 0.51 -1.6
243,741 + MPMX19_06074 0.51 -0.3
243,741 + MPMX19_06074 0.51 -1.0
243,741 + MPMX19_06074 0.51 -1.0
243,741 + MPMX19_06074 0.51 -0.3
243,741 + MPMX19_06074 0.51 -2.1
243,741 + MPMX19_06074 0.51 -1.3
243,741 + MPMX19_06074 0.51 -1.8
243,741 + MPMX19_06074 0.51 -1.1
243,741 + MPMX19_06074 0.51 -1.0
243,741 + MPMX19_06074 0.51 -1.0
243,741 + MPMX19_06074 0.51 -2.3
243,741 + MPMX19_06074 0.51 +1.0
243,741 + MPMX19_06074 0.51 -0.1
243,741 + MPMX19_06074 0.51 -0.7
243,741 + MPMX19_06074 0.51 -0.8
243,741 + MPMX19_06074 0.51 -0.5
243,742 - MPMX19_06074 0.51 -1.0
243,742 - MPMX19_06074 0.51 -1.4
243,742 - MPMX19_06074 0.51 -1.7
243,742 - MPMX19_06074 0.51 -1.0
243,742 - MPMX19_06074 0.51 -1.8
243,742 - MPMX19_06074 0.51 -2.2
243,742 - MPMX19_06074 0.51 +0.3
243,742 - MPMX19_06074 0.51 +0.8
243,742 - MPMX19_06074 0.51 -1.1
243,742 - MPMX19_06074 0.51 -1.0
243,742 - MPMX19_06074 0.51 -0.8
243,742 - MPMX19_06074 0.51 -0.7
243,742 - MPMX19_06074 0.51 -1.8
243,742 - MPMX19_06074 0.51 -0.3
243,742 - MPMX19_06074 0.51 +0.2
243,742 - MPMX19_06074 0.51 -1.7
243,742 - MPMX19_06074 0.51 -0.9
244,167 + -0.3
244,168 - -2.0
244,168 - +1.7
244,229 + -1.5
244,229 + -0.8
244,229 + -0.1
244,229 + +0.3
244,252 + -1.8
244,252 + -0.8
244,252 + -0.3
244,253 - +0.7
244,317 + -1.0

Or see this region's nucleotide sequence