Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05721

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05720 and MPMX19_05721 are separated by 75 nucleotidesMPMX19_05721 and MPMX19_05722 are separated by 16 nucleotidesMPMX19_05722 and MPMX19_05723 are separated by 46 nucleotides MPMX19_05720: MPMX19_05720 - hypothetical protein, at 438,737 to 439,891 _05720 MPMX19_05721: MPMX19_05721 - Hydrogenase maturation factor HypB, at 439,967 to 441,019 _05721 MPMX19_05722: MPMX19_05722 - hypothetical protein, at 441,036 to 441,266 _05722 MPMX19_05723: MPMX19_05723 - Carbamoyl dehydratase HypE, at 441,313 to 442,359 _05723 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1at 439.113 kb on - strand, within MPMX19_05720at 439.113 kb on - strand, within MPMX19_05720at 439.875 kb on + strandat 439.875 kb on + strandat 439.875 kb on + strandat 439.875 kb on + strandat 439.875 kb on + strandat 439.875 kb on + strandat 439.875 kb on + strandat 439.875 kb on + strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.876 kb on - strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.881 kb on + strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 439.882 kb on - strandat 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.215 kb on + strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.216 kb on - strand, within MPMX19_05721at 440.786 kb on + strand, within MPMX19_05721at 440.880 kb on - strand, within MPMX19_05721at 440.954 kb on + strandat 440.954 kb on + strandat 440.954 kb on + strandat 440.954 kb on + strandat 440.954 kb on + strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.955 kb on - strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.998 kb on + strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 440.999 kb on - strandat 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.159 kb on + strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.160 kb on - strand, within MPMX19_05722at 441.181 kb on - strand, within MPMX19_05722at 441.181 kb on - strand, within MPMX19_05722at 441.765 kb on + strand, within MPMX19_05723at 441.765 kb on + strand, within MPMX19_05723at 441.765 kb on + strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.766 kb on - strand, within MPMX19_05723at 441.797 kb on + strand, within MPMX19_05723at 441.798 kb on - strand, within MPMX19_05723

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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439,113 - MPMX19_05720 0.33 -0.3
439,113 - MPMX19_05720 0.33 +0.7
439,875 + -0.7
439,875 + -0.7
439,875 + -0.3
439,875 + -0.9
439,875 + -0.3
439,875 + -1.5
439,875 + -2.0
439,875 + -1.5
439,876 - +0.3
439,876 - -0.6
439,876 - +1.6
439,876 - -0.5
439,876 - -0.2
439,876 - +0.9
439,876 - +0.3
439,876 - -0.6
439,876 - -0.9
439,881 + +0.5
439,881 + -0.5
439,881 + +0.2
439,881 + -1.7
439,881 + +0.5
439,881 + +0.0
439,881 + -1.1
439,881 + -2.1
439,881 + -0.0
439,881 + -0.0
439,882 - -1.9
439,882 - -2.9
439,882 - -2.0
439,882 - -0.9
439,882 - -0.5
439,882 - -0.3
439,882 - -0.3
439,882 - -0.2
439,882 - +0.4
439,882 - -0.5
439,882 - -0.2
439,882 - -0.5
439,882 - -0.9
439,882 - -0.7
439,882 - +0.2
439,882 - -0.2
439,882 - -1.0
439,882 - -0.4
440,215 + MPMX19_05721 0.24 -0.0
440,215 + MPMX19_05721 0.24 -1.8
440,215 + MPMX19_05721 0.24 -0.3
440,215 + MPMX19_05721 0.24 -1.4
440,215 + MPMX19_05721 0.24 -0.5
440,215 + MPMX19_05721 0.24 +0.5
440,215 + MPMX19_05721 0.24 -0.5
440,215 + MPMX19_05721 0.24 +0.7
440,215 + MPMX19_05721 0.24 -0.0
440,215 + MPMX19_05721 0.24 +0.7
440,215 + MPMX19_05721 0.24 -0.0
440,215 + MPMX19_05721 0.24 -1.2
440,215 + MPMX19_05721 0.24 +0.1
440,215 + MPMX19_05721 0.24 -0.5
440,215 + MPMX19_05721 0.24 -0.6
440,216 - MPMX19_05721 0.24 -0.3
440,216 - MPMX19_05721 0.24 -1.1
440,216 - MPMX19_05721 0.24 -0.5
440,216 - MPMX19_05721 0.24 -0.2
440,216 - MPMX19_05721 0.24 +0.3
440,216 - MPMX19_05721 0.24 -0.6
440,216 - MPMX19_05721 0.24 -1.1
440,216 - MPMX19_05721 0.24 -1.2
440,216 - MPMX19_05721 0.24 -0.1
440,216 - MPMX19_05721 0.24 -1.2
440,216 - MPMX19_05721 0.24 +0.5
440,216 - MPMX19_05721 0.24 -0.3
440,216 - MPMX19_05721 0.24 -0.9
440,216 - MPMX19_05721 0.24 +1.0
440,216 - MPMX19_05721 0.24 -1.9
440,216 - MPMX19_05721 0.24 -1.0
440,786 + MPMX19_05721 0.78 +0.3
440,880 - MPMX19_05721 0.87 +0.3
440,954 + +0.1
440,954 + -2.8
440,954 + -1.7
440,954 + -1.0
440,954 + +0.3
440,955 - -0.3
440,955 - -1.3
440,955 - -0.0
440,955 - -1.6
440,955 - -0.5
440,955 - +0.4
440,955 - +0.9
440,998 + -0.9
440,998 + +1.1
440,998 + -1.3
440,998 + -1.8
440,998 + -1.5
440,998 + -2.2
440,998 + -0.6
440,998 + +1.5
440,998 + -1.0
440,999 - -1.0
440,999 - +1.3
440,999 - -0.3
440,999 - -1.2
440,999 - +0.3
440,999 - -0.6
440,999 - -0.3
440,999 - -1.0
440,999 - +0.7
440,999 - -0.3
441,159 + MPMX19_05722 0.53 +0.4
441,159 + MPMX19_05722 0.53 -2.1
441,159 + MPMX19_05722 0.53 -0.6
441,159 + MPMX19_05722 0.53 -2.5
441,159 + MPMX19_05722 0.53 -0.3
441,159 + MPMX19_05722 0.53 -1.9
441,159 + MPMX19_05722 0.53 -0.2
441,160 - MPMX19_05722 0.54 +0.4
441,160 - MPMX19_05722 0.54 -1.6
441,160 - MPMX19_05722 0.54 -1.3
441,160 - MPMX19_05722 0.54 -1.9
441,160 - MPMX19_05722 0.54 +0.1
441,160 - MPMX19_05722 0.54 -1.1
441,160 - MPMX19_05722 0.54 -1.2
441,181 - MPMX19_05722 0.63 -1.0
441,181 - MPMX19_05722 0.63 -0.7
441,765 + MPMX19_05723 0.43 -0.3
441,765 + MPMX19_05723 0.43 +0.3
441,765 + MPMX19_05723 0.43 -1.3
441,766 - MPMX19_05723 0.43 -1.2
441,766 - MPMX19_05723 0.43 -1.8
441,766 - MPMX19_05723 0.43 +0.2
441,766 - MPMX19_05723 0.43 -2.7
441,766 - MPMX19_05723 0.43 -1.4
441,797 + MPMX19_05723 0.46 -0.7
441,798 - MPMX19_05723 0.46 -1.1

Or see this region's nucleotide sequence