Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05345 and MPMX19_05346 are separated by 98 nucleotides MPMX19_05346 and MPMX19_05347 are separated by 68 nucleotides MPMX19_05347 and MPMX19_05348 are separated by 344 nucleotides
MPMX19_05345: MPMX19_05345 - hypothetical protein, at 17,210 to 17,923
_05345
MPMX19_05346: MPMX19_05346 - hypothetical protein, at 18,022 to 18,654
_05346
MPMX19_05347: MPMX19_05347 - hypothetical protein, at 18,723 to 19,607
_05347
MPMX19_05348: MPMX19_05348 - hypothetical protein, at 19,952 to 21,628
_05348
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.871 kb on + strand at 17.871 kb on + strand at 17.871 kb on + strand at 17.871 kb on + strand at 17.872 kb on - strand at 17.872 kb on - strand at 17.872 kb on - strand at 17.872 kb on - strand at 17.913 kb on + strand at 17.986 kb on - strand at 18.196 kb on + strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.197 kb on - strand, within MPMX19_05346 at 18.352 kb on - strand, within MPMX19_05346 at 18.352 kb on - strand, within MPMX19_05346 at 18.352 kb on - strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.424 kb on + strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.425 kb on - strand, within MPMX19_05346 at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.650 kb on + strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.651 kb on - strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.652 kb on + strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.653 kb on - strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.669 kb on + strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.670 kb on - strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.790 kb on + strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.791 kb on - strand at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.967 kb on + strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 18.968 kb on - strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.249 kb on + strand, within MPMX19_05347 at 19.337 kb on - strand, within MPMX19_05347 at 19.337 kb on - strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.369 kb on + strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.370 kb on - strand, within MPMX19_05347 at 19.646 kb on + strand at 19.647 kb on - strand at 19.700 kb on + strand at 19.789 kb on - strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.864 kb on + strand at 19.913 kb on + strand at 19.913 kb on + strand at 19.919 kb on + strand at 20.016 kb on + strand at 20.016 kb on + strand at 20.016 kb on + strand at 20.017 kb on - strand at 20.301 kb on + strand, within MPMX19_05348 at 20.301 kb on + strand, within MPMX19_05348 at 20.301 kb on + strand, within MPMX19_05348
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 17,871 + -1.6 17,871 + +0.3 17,871 + -2.1 17,871 + -0.5 17,872 - -0.1 17,872 - -1.2 17,872 - -1.3 17,872 - -0.6 17,913 + -1.7 17,986 - -2.0 18,196 + MPMX19_05346 0.27 -1.8 18,197 - MPMX19_05346 0.28 -1.6 18,197 - MPMX19_05346 0.28 -0.1 18,197 - MPMX19_05346 0.28 -0.8 18,197 - MPMX19_05346 0.28 +0.3 18,352 - MPMX19_05346 0.52 -0.7 18,352 - MPMX19_05346 0.52 -0.7 18,352 - MPMX19_05346 0.52 +1.2 18,424 + MPMX19_05346 0.64 -0.7 18,424 + MPMX19_05346 0.64 -2.4 18,424 + MPMX19_05346 0.64 -1.3 18,424 + MPMX19_05346 0.64 -0.0 18,424 + MPMX19_05346 0.64 -2.2 18,424 + MPMX19_05346 0.64 -0.8 18,424 + MPMX19_05346 0.64 +0.0 18,425 - MPMX19_05346 0.64 +0.3 18,425 - MPMX19_05346 0.64 -0.1 18,425 - MPMX19_05346 0.64 -0.7 18,425 - MPMX19_05346 0.64 -2.3 18,650 + -1.5 18,650 + -1.5 18,650 + -1.0 18,650 + -1.7 18,650 + -0.4 18,650 + +1.3 18,650 + +0.3 18,650 + +0.3 18,650 + -2.2 18,650 + -1.0 18,650 + -0.3 18,650 + -1.4 18,651 - -1.7 18,651 - -1.2 18,651 - -0.1 18,651 - +0.5 18,651 - +1.1 18,651 - -0.3 18,651 - +0.2 18,651 - -0.2 18,651 - -0.8 18,651 - -0.7 18,651 - -1.8 18,651 - -0.1 18,652 + -1.1 18,652 + -0.1 18,652 + -0.3 18,652 + -0.5 18,652 + -0.7 18,652 + -0.7 18,652 + +0.6 18,652 + -1.6 18,653 - -0.2 18,653 - -0.6 18,653 - -1.2 18,653 - -0.2 18,653 - -1.8 18,669 + -0.7 18,669 + -0.7 18,669 + -1.6 18,669 + +0.5 18,669 + -1.2 18,669 + -0.2 18,670 - -1.8 18,670 - -0.7 18,670 - -0.6 18,670 - -0.6 18,670 - -1.6 18,670 - -0.5 18,670 - -1.4 18,670 - -0.9 18,670 - +1.1 18,670 - -0.2 18,670 - -0.9 18,670 - -1.3 18,670 - -0.5 18,790 + -0.5 18,790 + -0.3 18,790 + +0.5 18,790 + -0.1 18,790 + -1.2 18,790 + +0.5 18,790 + -1.0 18,790 + +0.0 18,790 + -0.7 18,790 + -2.5 18,790 + -0.7 18,790 + -1.8 18,790 + -0.1 18,790 + -0.5 18,790 + +0.2 18,790 + -1.6 18,790 + +0.4 18,791 - -0.7 18,791 - -1.4 18,791 - -1.5 18,791 - -1.6 18,791 - -0.2 18,791 - -0.8 18,791 - -0.1 18,791 - -1.0 18,791 - -1.2 18,791 - -1.6 18,791 - -0.9 18,791 - +0.5 18,791 - -3.1 18,791 - -0.2 18,791 - -0.6 18,791 - -0.1 18,791 - -1.7 18,791 - +1.5 18,791 - -1.8 18,791 - -0.5 18,791 - -0.3 18,791 - -0.1 18,791 - -1.5 18,791 - -1.8 18,791 - +1.2 18,791 - +0.6 18,791 - -1.1 18,967 + MPMX19_05347 0.28 +0.2 18,967 + MPMX19_05347 0.28 -0.9 18,967 + MPMX19_05347 0.28 +1.1 18,967 + MPMX19_05347 0.28 +1.3 18,967 + MPMX19_05347 0.28 +0.9 18,968 - MPMX19_05347 0.28 +0.5 18,968 - MPMX19_05347 0.28 +0.0 18,968 - MPMX19_05347 0.28 +0.0 18,968 - MPMX19_05347 0.28 -0.9 19,249 + MPMX19_05347 0.59 -0.6 19,249 + MPMX19_05347 0.59 -0.2 19,249 + MPMX19_05347 0.59 -0.7 19,249 + MPMX19_05347 0.59 -1.0 19,249 + MPMX19_05347 0.59 +0.3 19,337 - MPMX19_05347 0.69 -0.2 19,337 - MPMX19_05347 0.69 -0.2 19,369 + MPMX19_05347 0.73 -1.5 19,369 + MPMX19_05347 0.73 -0.7 19,369 + MPMX19_05347 0.73 -0.8 19,369 + MPMX19_05347 0.73 +0.5 19,369 + MPMX19_05347 0.73 +0.1 19,369 + MPMX19_05347 0.73 -0.5 19,369 + MPMX19_05347 0.73 -0.2 19,369 + MPMX19_05347 0.73 -1.1 19,369 + MPMX19_05347 0.73 +1.9 19,369 + MPMX19_05347 0.73 -0.7 19,369 + MPMX19_05347 0.73 +0.8 19,369 + MPMX19_05347 0.73 -2.7 19,369 + MPMX19_05347 0.73 -1.0 19,369 + MPMX19_05347 0.73 +0.2 19,370 - MPMX19_05347 0.73 -0.9 19,370 - MPMX19_05347 0.73 -1.7 19,370 - MPMX19_05347 0.73 -0.1 19,370 - MPMX19_05347 0.73 +0.5 19,370 - MPMX19_05347 0.73 -0.7 19,370 - MPMX19_05347 0.73 -0.2 19,370 - MPMX19_05347 0.73 +0.4 19,370 - MPMX19_05347 0.73 +0.0 19,370 - MPMX19_05347 0.73 -1.2 19,370 - MPMX19_05347 0.73 -0.8 19,370 - MPMX19_05347 0.73 +1.0 19,646 + -1.6 19,647 - -1.7 19,700 + -0.2 19,789 - -0.7 19,864 + -0.5 19,864 + +0.8 19,864 + +0.3 19,864 + -0.5 19,864 + -0.9 19,864 + -2.1 19,864 + +0.1 19,864 + -1.4 19,864 + -0.7 19,864 + +0.2 19,913 + +1.3 19,913 + -0.2 19,919 + -0.5 20,016 + -0.5 20,016 + +0.3 20,016 + +0.9 20,017 - -0.1 20,301 + MPMX19_05348 0.21 -1.0 20,301 + MPMX19_05348 0.21 -1.7 20,301 + MPMX19_05348 0.21 -0.5
Or see this region's nucleotide sequence