Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05179 and MPMX19_05180 are separated by 26 nucleotides MPMX19_05180 and MPMX19_05181 are separated by 6 nucleotides MPMX19_05181 and MPMX19_05182 are separated by 130 nucleotides
MPMX19_05179: MPMX19_05179 - Putative aliphatic sulfonates-binding protein, at 682,516 to 683,529
_05179
MPMX19_05180: MPMX19_05180 - Vitamin B12 import ATP-binding protein BtuD, at 683,556 to 684,461
_05180
MPMX19_05181: MPMX19_05181 - Putative aliphatic sulfonates transport permease protein SsuC, at 684,468 to 685,295
_05181
MPMX19_05182: MPMX19_05182 - HTH-type transcriptional regulator HdfR, at 685,426 to 686,331
_05182
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1 at 683.517 kb on + strand at 684.479 kb on + strand at 684.479 kb on + strand at 684.829 kb on + strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 684.830 kb on - strand, within MPMX19_05181 at 686.112 kb on - strand, within MPMX19_05182 at 686.112 kb on - strand, within MPMX19_05182
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 683,517 + -1.5 684,479 + -2.0 684,479 + -0.6 684,829 + MPMX19_05181 0.44 -0.9 684,830 - MPMX19_05181 0.44 +0.1 684,830 - MPMX19_05181 0.44 -0.5 684,830 - MPMX19_05181 0.44 -2.2 684,830 - MPMX19_05181 0.44 -0.4 686,112 - MPMX19_05182 0.76 -2.0 686,112 - MPMX19_05182 0.76 -0.6
Or see this region's nucleotide sequence