Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05081 and MPMX19_05082 are separated by 66 nucleotides MPMX19_05082 and MPMX19_05083 are separated by 85 nucleotides MPMX19_05083 and MPMX19_05084 overlap by 1 nucleotides MPMX19_05084 and MPMX19_05085 are separated by 22 nucleotides
MPMX19_05081: MPMX19_05081 - Sensor histidine kinase RcsC, at 570,409 to 572,814
_05081
MPMX19_05082: MPMX19_05082 - hypothetical protein, at 572,881 to 573,255
_05082
MPMX19_05083: MPMX19_05083 - hypothetical protein, at 573,341 to 573,610
_05083
MPMX19_05084: MPMX19_05084 - hypothetical protein, at 573,610 to 573,885
_05084
MPMX19_05085: MPMX19_05085 - hypothetical protein, at 573,908 to 574,333
_05085
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.077 kb on + strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.078 kb on - strand, within MPMX19_05081 at 572.079 kb on + strand, within MPMX19_05081 at 572.079 kb on + strand, within MPMX19_05081 at 572.079 kb on + strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.080 kb on - strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.278 kb on + strand, within MPMX19_05081 at 572.279 kb on - strand, within MPMX19_05081 at 572.279 kb on - strand, within MPMX19_05081 at 572.279 kb on - strand, within MPMX19_05081 at 572.434 kb on + strand, within MPMX19_05081 at 572.605 kb on + strand at 572.606 kb on - strand at 572.728 kb on + strand at 572.860 kb on + strand at 572.860 kb on + strand at 572.860 kb on + strand at 572.861 kb on - strand at 572.861 kb on - strand at 572.904 kb on + strand at 572.904 kb on + strand at 573.154 kb on + strand, within MPMX19_05082 at 573.154 kb on + strand, within MPMX19_05082 at 573.154 kb on + strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.155 kb on - strand, within MPMX19_05082 at 573.286 kb on + strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.287 kb on - strand at 573.365 kb on + strand at 573.366 kb on - strand at 573.366 kb on - strand at 573.366 kb on - strand at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.419 kb on + strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.420 kb on - strand, within MPMX19_05083 at 573.584 kb on + strand at 573.584 kb on + strand at 573.658 kb on + strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.659 kb on - strand, within MPMX19_05084 at 573.720 kb on + strand, within MPMX19_05084 at 573.720 kb on + strand, within MPMX19_05084 at 573.721 kb on - strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.808 kb on + strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.809 kb on - strand, within MPMX19_05084 at 573.890 kb on + strand at 573.891 kb on - strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.909 kb on + strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 573.910 kb on - strand at 574.020 kb on + strand, within MPMX19_05085 at 574.020 kb on + strand, within MPMX19_05085 at 574.021 kb on - strand, within MPMX19_05085 at 574.047 kb on + strand, within MPMX19_05085 at 574.048 kb on - strand, within MPMX19_05085 at 574.048 kb on - strand, within MPMX19_05085 at 574.059 kb on + strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.060 kb on - strand, within MPMX19_05085 at 574.072 kb on - strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.074 kb on + strand, within MPMX19_05085 at 574.075 kb on - strand, within MPMX19_05085 at 574.075 kb on - strand, within MPMX19_05085 at 574.089 kb on + strand, within MPMX19_05085 at 574.090 kb on - strand, within MPMX19_05085
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 572,077 + MPMX19_05081 0.69 -0.8 572,077 + MPMX19_05081 0.69 +0.9 572,077 + MPMX19_05081 0.69 -0.8 572,077 + MPMX19_05081 0.69 -1.2 572,077 + MPMX19_05081 0.69 -0.4 572,077 + MPMX19_05081 0.69 -1.8 572,077 + MPMX19_05081 0.69 -0.4 572,077 + MPMX19_05081 0.69 +1.9 572,077 + MPMX19_05081 0.69 -1.6 572,077 + MPMX19_05081 0.69 -1.8 572,077 + MPMX19_05081 0.69 +0.4 572,077 + MPMX19_05081 0.69 -0.8 572,077 + MPMX19_05081 0.69 +0.9 572,077 + MPMX19_05081 0.69 -0.6 572,077 + MPMX19_05081 0.69 -0.1 572,078 - MPMX19_05081 0.69 -1.6 572,078 - MPMX19_05081 0.69 +0.1 572,078 - MPMX19_05081 0.69 +0.1 572,078 - MPMX19_05081 0.69 -0.1 572,078 - MPMX19_05081 0.69 +0.1 572,078 - MPMX19_05081 0.69 -1.7 572,078 - MPMX19_05081 0.69 +0.4 572,078 - MPMX19_05081 0.69 -0.6 572,078 - MPMX19_05081 0.69 -0.2 572,078 - MPMX19_05081 0.69 +0.6 572,078 - MPMX19_05081 0.69 -0.1 572,078 - MPMX19_05081 0.69 -1.4 572,078 - MPMX19_05081 0.69 -0.1 572,078 - MPMX19_05081 0.69 -1.5 572,079 + MPMX19_05081 0.69 -0.5 572,079 + MPMX19_05081 0.69 -2.6 572,079 + MPMX19_05081 0.69 -1.3 572,080 - MPMX19_05081 0.69 -0.6 572,080 - MPMX19_05081 0.69 -0.6 572,080 - MPMX19_05081 0.69 +0.2 572,080 - MPMX19_05081 0.69 -0.1 572,278 + MPMX19_05081 0.78 -1.6 572,278 + MPMX19_05081 0.78 +0.2 572,278 + MPMX19_05081 0.78 -0.1 572,278 + MPMX19_05081 0.78 -1.8 572,278 + MPMX19_05081 0.78 -0.1 572,278 + MPMX19_05081 0.78 +0.7 572,279 - MPMX19_05081 0.78 -0.4 572,279 - MPMX19_05081 0.78 -0.4 572,279 - MPMX19_05081 0.78 -0.7 572,434 + MPMX19_05081 0.84 +0.9 572,605 + -0.4 572,606 - -2.2 572,728 + -0.3 572,860 + -0.9 572,860 + -0.9 572,860 + -0.9 572,861 - -1.4 572,861 - -1.2 572,904 + -2.3 572,904 + -0.7 573,154 + MPMX19_05082 0.73 +0.9 573,154 + MPMX19_05082 0.73 -1.1 573,154 + MPMX19_05082 0.73 +0.4 573,155 - MPMX19_05082 0.73 -1.4 573,155 - MPMX19_05082 0.73 -0.9 573,155 - MPMX19_05082 0.73 +0.2 573,155 - MPMX19_05082 0.73 +0.9 573,286 + -2.2 573,287 - +0.3 573,287 - +0.4 573,287 - -0.7 573,287 - -1.3 573,365 + -1.0 573,366 - -0.4 573,366 - -0.5 573,366 - -1.5 573,419 + MPMX19_05083 0.29 -0.8 573,419 + MPMX19_05083 0.29 -1.5 573,419 + MPMX19_05083 0.29 -1.4 573,419 + MPMX19_05083 0.29 +0.9 573,419 + MPMX19_05083 0.29 -0.7 573,419 + MPMX19_05083 0.29 -1.1 573,419 + MPMX19_05083 0.29 -1.4 573,419 + MPMX19_05083 0.29 -0.7 573,419 + MPMX19_05083 0.29 +0.6 573,419 + MPMX19_05083 0.29 -0.7 573,420 - MPMX19_05083 0.29 -1.1 573,420 - MPMX19_05083 0.29 -0.9 573,420 - MPMX19_05083 0.29 -1.8 573,420 - MPMX19_05083 0.29 -0.9 573,420 - MPMX19_05083 0.29 -0.0 573,420 - MPMX19_05083 0.29 +0.3 573,420 - MPMX19_05083 0.29 -1.8 573,584 + +0.6 573,584 + -2.2 573,658 + MPMX19_05084 0.17 -1.6 573,659 - MPMX19_05084 0.18 -1.4 573,659 - MPMX19_05084 0.18 -0.5 573,659 - MPMX19_05084 0.18 +1.9 573,720 + MPMX19_05084 0.40 -0.5 573,720 + MPMX19_05084 0.40 +0.3 573,721 - MPMX19_05084 0.40 -0.1 573,808 + MPMX19_05084 0.72 -0.8 573,808 + MPMX19_05084 0.72 +0.1 573,808 + MPMX19_05084 0.72 -1.2 573,808 + MPMX19_05084 0.72 -1.3 573,808 + MPMX19_05084 0.72 -0.8 573,808 + MPMX19_05084 0.72 -0.1 573,808 + MPMX19_05084 0.72 -1.0 573,808 + MPMX19_05084 0.72 -0.6 573,808 + MPMX19_05084 0.72 -1.3 573,808 + MPMX19_05084 0.72 -1.0 573,809 - MPMX19_05084 0.72 +0.1 573,809 - MPMX19_05084 0.72 -1.6 573,809 - MPMX19_05084 0.72 +0.3 573,809 - MPMX19_05084 0.72 +1.1 573,809 - MPMX19_05084 0.72 -0.6 573,809 - MPMX19_05084 0.72 -2.1 573,809 - MPMX19_05084 0.72 +0.9 573,809 - MPMX19_05084 0.72 -0.1 573,809 - MPMX19_05084 0.72 -0.6 573,809 - MPMX19_05084 0.72 -0.6 573,809 - MPMX19_05084 0.72 -0.6 573,809 - MPMX19_05084 0.72 -3.1 573,890 + +0.1 573,891 - -0.6 573,909 + -0.9 573,909 + -0.4 573,909 + -1.0 573,909 + +0.3 573,909 + -1.9 573,909 + -0.4 573,909 + +1.9 573,909 + -2.1 573,910 - +0.1 573,910 - -1.5 573,910 - -1.5 573,910 - +0.4 573,910 - +0.1 574,020 + MPMX19_05085 0.26 -2.4 574,020 + MPMX19_05085 0.26 +0.2 574,021 - MPMX19_05085 0.27 -0.5 574,047 + MPMX19_05085 0.33 -1.6 574,048 - MPMX19_05085 0.33 -1.5 574,048 - MPMX19_05085 0.33 -0.6 574,059 + MPMX19_05085 0.35 -0.6 574,060 - MPMX19_05085 0.36 -0.4 574,060 - MPMX19_05085 0.36 -1.4 574,060 - MPMX19_05085 0.36 -0.6 574,072 - MPMX19_05085 0.38 -0.4 574,074 + MPMX19_05085 0.39 -1.6 574,074 + MPMX19_05085 0.39 +0.1 574,074 + MPMX19_05085 0.39 -3.0 574,074 + MPMX19_05085 0.39 -0.5 574,074 + MPMX19_05085 0.39 +0.7 574,075 - MPMX19_05085 0.39 -0.1 574,075 - MPMX19_05085 0.39 +0.6 574,089 + MPMX19_05085 0.42 -0.6 574,090 - MPMX19_05085 0.43 -0.7
Or see this region's nucleotide sequence