Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03917

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03915 and MPMX19_03916 are separated by 74 nucleotidesMPMX19_03916 and MPMX19_03917 overlap by 8 nucleotidesMPMX19_03917 and MPMX19_03918 overlap by 37 nucleotides MPMX19_03915: MPMX19_03915 - hypothetical protein, at 193,386 to 194,351 _03915 MPMX19_03916: MPMX19_03916 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 194,426 to 195,076 _03916 MPMX19_03917: MPMX19_03917 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 195,069 to 196,088 _03917 MPMX19_03918: MPMX19_03918 - DNA-binding transcriptional repressor YiaJ, at 196,052 to 196,906 _03918 Position (kb) 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1at 194.083 kb on + strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.194 kb on + strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.233 kb on + strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.508 kb on + strand, within MPMX19_03916at 194.508 kb on + strand, within MPMX19_03916at 194.508 kb on + strand, within MPMX19_03916at 194.509 kb on - strand, within MPMX19_03916at 194.961 kb on + strand, within MPMX19_03916at 194.962 kb on - strand, within MPMX19_03916at 195.202 kb on + strand, within MPMX19_03917at 195.202 kb on + strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.311 kb on + strand, within MPMX19_03918at 196.311 kb on + strand, within MPMX19_03918at 196.351 kb on + strand, within MPMX19_03918at 196.352 kb on - strand, within MPMX19_03918at 196.352 kb on - strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.659 kb on + strand, within MPMX19_03918at 196.659 kb on + strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.669 kb on - strand, within MPMX19_03918at 196.669 kb on - strand, within MPMX19_03918at 196.686 kb on + strand, within MPMX19_03918at 196.686 kb on + strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.932 kb on + strandat 196.932 kb on + strandat 196.932 kb on + strandat 196.932 kb on + strandat 196.933 kb on - strandat 196.933 kb on - strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.947 kb on - strandat 196.947 kb on - strandat 196.947 kb on - strandat 196.979 kb on + strandat 197.006 kb on - strandat 197.046 kb on + strandat 197.047 kb on - strandat 197.047 kb on - strandat 197.047 kb on - strandat 197.052 kb on + strandat 197.052 kb on + strandat 197.052 kb on + strandat 197.052 kb on + strandat 197.066 kb on + strandat 197.066 kb on + strandat 197.077 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
194,083 + MPMX19_03915 0.72 -1.3
194,084 - MPMX19_03915 0.72 +0.6
194,084 - MPMX19_03915 0.72 -0.3
194,084 - MPMX19_03915 0.72 -0.5
194,194 + MPMX19_03915 0.84 -0.5
194,195 - MPMX19_03915 0.84 +0.5
194,195 - MPMX19_03915 0.84 -2.0
194,233 + MPMX19_03915 0.88 -0.0
194,234 - MPMX19_03915 0.88 -1.2
194,234 - MPMX19_03915 0.88 +0.3
194,234 - MPMX19_03915 0.88 -1.5
194,351 + -0.3
194,351 + -0.2
194,351 + -0.3
194,351 + +0.3
194,351 + -1.4
194,351 - -1.6
194,352 - +0.3
194,352 - -0.9
194,352 - +0.7
194,352 - +0.2
194,508 + MPMX19_03916 0.13 -0.4
194,508 + MPMX19_03916 0.13 -0.0
194,508 + MPMX19_03916 0.13 +1.7
194,509 - MPMX19_03916 0.13 -1.6
194,961 + MPMX19_03916 0.82 +0.4
194,962 - MPMX19_03916 0.82 +0.2
195,202 + MPMX19_03917 0.13 -1.2
195,202 + MPMX19_03917 0.13 -0.6
195,203 - MPMX19_03917 0.13 +0.5
195,203 - MPMX19_03917 0.13 -0.5
195,550 + MPMX19_03917 0.47 -0.9
195,550 + MPMX19_03917 0.47 +0.1
195,550 + MPMX19_03917 0.47 -1.5
195,550 + MPMX19_03917 0.47 -0.0
195,550 + MPMX19_03917 0.47 -1.8
195,550 + MPMX19_03917 0.47 -0.0
195,550 + MPMX19_03917 0.47 -0.0
195,550 + MPMX19_03917 0.47 -0.9
195,550 + MPMX19_03917 0.47 +0.7
195,550 + MPMX19_03917 0.47 -0.5
195,550 + MPMX19_03917 0.47 -0.2
195,550 + MPMX19_03917 0.47 -1.6
195,550 + MPMX19_03917 0.47 -1.2
195,550 + MPMX19_03917 0.47 +1.3
195,550 + MPMX19_03917 0.47 +0.1
195,550 + MPMX19_03917 0.47 +0.0
195,550 + MPMX19_03917 0.47 -0.7
195,550 + MPMX19_03917 0.47 -2.6
195,550 + MPMX19_03917 0.47 -0.2
195,550 + MPMX19_03917 0.47 -1.0
195,550 + MPMX19_03917 0.47 -0.3
195,550 + MPMX19_03917 0.47 -1.7
195,550 + MPMX19_03917 0.47 +0.3
195,551 - MPMX19_03917 0.47 -0.0
195,551 - MPMX19_03917 0.47 -0.7
195,551 - MPMX19_03917 0.47 -1.8
195,551 - MPMX19_03917 0.47 -1.3
195,551 - MPMX19_03917 0.47 -1.0
195,551 - MPMX19_03917 0.47 -0.5
195,551 - MPMX19_03917 0.47 -0.8
195,551 - MPMX19_03917 0.47 +1.5
195,551 - MPMX19_03917 0.47 -2.2
195,551 - MPMX19_03917 0.47 -1.2
195,551 - MPMX19_03917 0.47 -0.2
195,551 - MPMX19_03917 0.47 -0.0
195,551 - MPMX19_03917 0.47 -0.8
195,551 - MPMX19_03917 0.47 -1.5
195,551 - MPMX19_03917 0.47 +0.3
195,551 - MPMX19_03917 0.47 -1.4
195,551 - MPMX19_03917 0.47 -1.6
195,551 - MPMX19_03917 0.47 +0.4
195,551 - MPMX19_03917 0.47 -0.5
195,551 - MPMX19_03917 0.47 -1.7
195,551 - MPMX19_03917 0.47 -0.3
195,551 - MPMX19_03917 0.47 -0.9
195,551 - MPMX19_03917 0.47 -0.7
195,551 - MPMX19_03917 0.47 -1.0
195,551 - MPMX19_03917 0.47 -1.4
195,551 - MPMX19_03917 0.47 -0.3
195,551 - MPMX19_03917 0.47 +0.3
195,551 - MPMX19_03917 0.47 -1.2
195,718 + MPMX19_03917 0.64 -0.4
195,718 + MPMX19_03917 0.64 -0.5
195,718 + MPMX19_03917 0.64 +0.3
195,718 + MPMX19_03917 0.64 -0.6
195,718 + MPMX19_03917 0.64 -0.7
195,718 + MPMX19_03917 0.64 +0.0
195,718 + MPMX19_03917 0.64 +1.3
195,718 + MPMX19_03917 0.64 -1.7
195,718 + MPMX19_03917 0.64 -1.0
195,718 + MPMX19_03917 0.64 -2.5
195,719 - MPMX19_03917 0.64 -0.5
195,719 - MPMX19_03917 0.64 +0.7
195,719 - MPMX19_03917 0.64 -0.3
195,719 - MPMX19_03917 0.64 -0.5
195,719 - MPMX19_03917 0.64 +0.3
195,719 - MPMX19_03917 0.64 -0.7
195,719 - MPMX19_03917 0.64 -0.5
195,719 - MPMX19_03917 0.64 +0.3
195,817 + MPMX19_03917 0.73 -0.5
195,817 + MPMX19_03917 0.73 +0.4
195,817 + MPMX19_03917 0.73 -0.0
195,817 + MPMX19_03917 0.73 -1.0
195,817 + MPMX19_03917 0.73 +0.7
195,817 + MPMX19_03917 0.73 -1.4
195,817 + MPMX19_03917 0.73 +0.7
195,817 + MPMX19_03917 0.73 -1.5
195,817 + MPMX19_03917 0.73 -0.2
195,817 + MPMX19_03917 0.73 -0.9
195,817 + MPMX19_03917 0.73 -1.2
195,817 + MPMX19_03917 0.73 -2.1
195,817 + MPMX19_03917 0.73 -0.7
195,817 + MPMX19_03917 0.73 -0.7
195,818 - MPMX19_03917 0.73 -0.8
195,818 - MPMX19_03917 0.73 +0.7
195,818 - MPMX19_03917 0.73 -1.8
196,164 + MPMX19_03918 0.13 -1.5
196,164 + MPMX19_03918 0.13 -0.7
196,164 + MPMX19_03918 0.13 -0.9
196,164 + MPMX19_03918 0.13 -0.7
196,164 + MPMX19_03918 0.13 +1.1
196,164 + MPMX19_03918 0.13 -1.6
196,164 + MPMX19_03918 0.13 -0.0
196,164 + MPMX19_03918 0.13 -2.2
196,164 + MPMX19_03918 0.13 -0.8
196,164 + MPMX19_03918 0.13 -0.0
196,164 + MPMX19_03918 0.13 -0.9
196,164 + MPMX19_03918 0.13 +0.3
196,164 + MPMX19_03918 0.13 -0.2
196,164 + MPMX19_03918 0.13 -0.3
196,164 + MPMX19_03918 0.13 -0.6
196,164 + MPMX19_03918 0.13 +0.7
196,165 - MPMX19_03918 0.13 -2.0
196,165 - MPMX19_03918 0.13 -0.3
196,165 - MPMX19_03918 0.13 -0.3
196,165 - MPMX19_03918 0.13 +0.7
196,165 - MPMX19_03918 0.13 -3.3
196,165 - MPMX19_03918 0.13 +0.5
196,165 - MPMX19_03918 0.13 -1.9
196,165 - MPMX19_03918 0.13 -1.4
196,165 - MPMX19_03918 0.13 +0.1
196,165 - MPMX19_03918 0.13 -1.0
196,165 - MPMX19_03918 0.13 +0.1
196,311 + MPMX19_03918 0.30 -0.0
196,311 + MPMX19_03918 0.30 -1.2
196,351 + MPMX19_03918 0.35 -0.7
196,352 - MPMX19_03918 0.35 -0.1
196,352 - MPMX19_03918 0.35 -0.7
196,509 + MPMX19_03918 0.53 +0.7
196,509 + MPMX19_03918 0.53 +0.1
196,509 + MPMX19_03918 0.53 +0.7
196,509 + MPMX19_03918 0.53 -0.3
196,509 + MPMX19_03918 0.53 -1.0
196,510 - MPMX19_03918 0.54 -0.3
196,510 - MPMX19_03918 0.54 -0.7
196,510 - MPMX19_03918 0.54 -0.1
196,510 - MPMX19_03918 0.54 -0.8
196,510 - MPMX19_03918 0.54 +1.0
196,510 - MPMX19_03918 0.54 -0.7
196,510 - MPMX19_03918 0.54 +0.1
196,510 - MPMX19_03918 0.54 +0.5
196,659 + MPMX19_03918 0.71 -0.9
196,659 + MPMX19_03918 0.71 -0.3
196,660 - MPMX19_03918 0.71 -0.2
196,660 - MPMX19_03918 0.71 -1.3
196,660 - MPMX19_03918 0.71 -0.5
196,660 - MPMX19_03918 0.71 -1.0
196,660 - MPMX19_03918 0.71 -1.6
196,660 - MPMX19_03918 0.71 -1.4
196,668 + MPMX19_03918 0.72 -0.5
196,668 + MPMX19_03918 0.72 -1.7
196,668 + MPMX19_03918 0.72 -0.2
196,668 + MPMX19_03918 0.72 +0.2
196,668 + MPMX19_03918 0.72 -1.3
196,668 + MPMX19_03918 0.72 -2.2
196,669 - MPMX19_03918 0.72 +0.3
196,669 - MPMX19_03918 0.72 -0.8
196,686 + MPMX19_03918 0.74 -0.3
196,686 + MPMX19_03918 0.74 -1.8
196,687 - MPMX19_03918 0.74 -0.4
196,687 - MPMX19_03918 0.74 -0.2
196,687 - MPMX19_03918 0.74 -0.7
196,687 - MPMX19_03918 0.74 +0.1
196,687 - MPMX19_03918 0.74 +0.7
196,932 + -1.6
196,932 + -1.0
196,932 + -1.0
196,932 + -1.0
196,933 - -0.5
196,933 - +0.7
196,946 + -0.0
196,946 + -0.2
196,946 + -0.2
196,946 + -1.2
196,946 + -1.4
196,946 + -1.7
196,946 + -0.4
196,947 - -1.2
196,947 - -1.4
196,947 - +0.0
196,979 + -1.7
197,006 - +0.5
197,046 + +0.1
197,047 - -0.0
197,047 - -0.0
197,047 - -0.0
197,052 + -0.1
197,052 + -1.0
197,052 + +0.5
197,052 + -0.7
197,066 + -2.2
197,066 + -0.5
197,077 - -0.7

Or see this region's nucleotide sequence