Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03664

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03662 and MPMX19_03663 overlap by 8 nucleotidesMPMX19_03663 and MPMX19_03664 are separated by 34 nucleotidesMPMX19_03664 and MPMX19_03665 overlap by 1 nucleotidesMPMX19_03665 and MPMX19_03666 overlap by 10 nucleotides MPMX19_03662: MPMX19_03662 - hypothetical protein, at 1,100,565 to 1,101,374 _03662 MPMX19_03663: MPMX19_03663 - hypothetical protein, at 1,101,367 to 1,102,176 _03663 MPMX19_03664: MPMX19_03664 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,102,211 to 1,103,380 _03664 MPMX19_03665: MPMX19_03665 - hypothetical protein, at 1,103,380 to 1,104,192 _03665 MPMX19_03666: MPMX19_03666 - hypothetical protein, at 1,104,183 to 1,104,632 _03666 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -2 -1 0 1 2at 1101.415 kb on + strandat 1101.415 kb on + strandat 1101.442 kb on + strandat 1101.442 kb on + strandat 1101.442 kb on + strandat 1101.442 kb on + strandat 1101.443 kb on - strandat 1101.671 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.778 kb on + strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.779 kb on - strand, within MPMX19_03663at 1101.807 kb on - strand, within MPMX19_03663at 1101.807 kb on - strand, within MPMX19_03663at 1101.955 kb on + strand, within MPMX19_03663at 1101.955 kb on + strand, within MPMX19_03663at 1101.956 kb on - strand, within MPMX19_03663at 1101.956 kb on - strand, within MPMX19_03663at 1101.956 kb on - strand, within MPMX19_03663at 1102.119 kb on + strandat 1102.119 kb on + strandat 1102.119 kb on + strandat 1102.119 kb on + strandat 1102.119 kb on + strandat 1102.119 kb on + strandat 1102.120 kb on - strandat 1102.184 kb on - strandat 1102.203 kb on + strandat 1102.309 kb on + strandat 1102.309 kb on + strandat 1102.309 kb on + strandat 1102.310 kb on - strandat 1102.351 kb on + strand, within MPMX19_03664at 1102.420 kb on + strand, within MPMX19_03664at 1102.420 kb on + strand, within MPMX19_03664at 1102.420 kb on + strand, within MPMX19_03664at 1102.421 kb on - strand, within MPMX19_03664at 1102.464 kb on - strand, within MPMX19_03664at 1102.778 kb on + strand, within MPMX19_03664at 1102.778 kb on + strand, within MPMX19_03664at 1102.778 kb on + strand, within MPMX19_03664at 1102.779 kb on - strand, within MPMX19_03664at 1102.779 kb on - strand, within MPMX19_03664at 1103.048 kb on + strand, within MPMX19_03664at 1103.048 kb on + strand, within MPMX19_03664at 1103.048 kb on + strand, within MPMX19_03664at 1103.048 kb on + strand, within MPMX19_03664at 1103.048 kb on + strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.049 kb on - strand, within MPMX19_03664at 1103.078 kb on + strand, within MPMX19_03664at 1103.078 kb on + strand, within MPMX19_03664at 1103.078 kb on + strand, within MPMX19_03664at 1103.078 kb on + strand, within MPMX19_03664at 1103.079 kb on - strand, within MPMX19_03664at 1103.079 kb on - strand, within MPMX19_03664at 1103.079 kb on - strand, within MPMX19_03664at 1103.079 kb on - strand, within MPMX19_03664at 1103.079 kb on - strand, within MPMX19_03664at 1103.079 kb on - strand, within MPMX19_03664at 1103.153 kb on + strand, within MPMX19_03664at 1103.154 kb on - strand, within MPMX19_03664at 1103.154 kb on - strand, within MPMX19_03664at 1103.268 kb on + strandat 1103.269 kb on - strandat 1103.279 kb on + strandat 1103.389 kb on + strandat 1103.389 kb on + strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.613 kb on + strand, within MPMX19_03665at 1103.741 kb on - strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.873 kb on - strand, within MPMX19_03665at 1103.873 kb on - strand, within MPMX19_03665at 1103.913 kb on + strand, within MPMX19_03665at 1104.360 kb on + strand, within MPMX19_03666at 1104.360 kb on + strand, within MPMX19_03666at 1104.360 kb on + strand, within MPMX19_03666

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,101,415 + -1.2
1,101,415 + -1.2
1,101,442 + -0.0
1,101,442 + +0.9
1,101,442 + +0.3
1,101,442 + +0.4
1,101,443 - -1.2
1,101,671 + MPMX19_03663 0.38 -1.4
1,101,778 + MPMX19_03663 0.51 -0.4
1,101,778 + MPMX19_03663 0.51 -0.7
1,101,778 + MPMX19_03663 0.51 -0.5
1,101,778 + MPMX19_03663 0.51 -0.6
1,101,778 + MPMX19_03663 0.51 -1.1
1,101,778 + MPMX19_03663 0.51 +1.0
1,101,778 + MPMX19_03663 0.51 -0.8
1,101,778 + MPMX19_03663 0.51 -0.6
1,101,779 - MPMX19_03663 0.51 -2.3
1,101,779 - MPMX19_03663 0.51 -0.9
1,101,779 - MPMX19_03663 0.51 +0.9
1,101,779 - MPMX19_03663 0.51 -0.6
1,101,779 - MPMX19_03663 0.51 +0.4
1,101,779 - MPMX19_03663 0.51 +0.8
1,101,779 - MPMX19_03663 0.51 -0.5
1,101,807 - MPMX19_03663 0.54 -1.6
1,101,807 - MPMX19_03663 0.54 -1.2
1,101,955 + MPMX19_03663 0.73 -1.4
1,101,955 + MPMX19_03663 0.73 +1.5
1,101,956 - MPMX19_03663 0.73 -1.1
1,101,956 - MPMX19_03663 0.73 -0.0
1,101,956 - MPMX19_03663 0.73 -1.0
1,102,119 + -1.0
1,102,119 + -0.1
1,102,119 + -1.4
1,102,119 + -0.2
1,102,119 + -0.4
1,102,119 + -1.8
1,102,120 - -1.0
1,102,184 - -0.8
1,102,203 + -1.1
1,102,309 + -0.4
1,102,309 + +0.0
1,102,309 + -1.1
1,102,310 - +0.4
1,102,351 + MPMX19_03664 0.12 -1.3
1,102,420 + MPMX19_03664 0.18 +0.4
1,102,420 + MPMX19_03664 0.18 -1.2
1,102,420 + MPMX19_03664 0.18 +0.0
1,102,421 - MPMX19_03664 0.18 -0.6
1,102,464 - MPMX19_03664 0.22 +0.6
1,102,778 + MPMX19_03664 0.48 +0.5
1,102,778 + MPMX19_03664 0.48 +0.8
1,102,778 + MPMX19_03664 0.48 -1.1
1,102,779 - MPMX19_03664 0.49 -0.4
1,102,779 - MPMX19_03664 0.49 -0.8
1,103,048 + MPMX19_03664 0.72 +0.5
1,103,048 + MPMX19_03664 0.72 -0.4
1,103,048 + MPMX19_03664 0.72 -1.2
1,103,048 + MPMX19_03664 0.72 +1.6
1,103,048 + MPMX19_03664 0.72 -1.1
1,103,049 - MPMX19_03664 0.72 -1.1
1,103,049 - MPMX19_03664 0.72 -0.2
1,103,049 - MPMX19_03664 0.72 -0.6
1,103,049 - MPMX19_03664 0.72 -1.0
1,103,049 - MPMX19_03664 0.72 -0.6
1,103,049 - MPMX19_03664 0.72 -1.0
1,103,049 - MPMX19_03664 0.72 +0.2
1,103,049 - MPMX19_03664 0.72 +1.4
1,103,049 - MPMX19_03664 0.72 -0.4
1,103,049 - MPMX19_03664 0.72 -0.1
1,103,049 - MPMX19_03664 0.72 -0.8
1,103,078 + MPMX19_03664 0.74 -0.4
1,103,078 + MPMX19_03664 0.74 +1.2
1,103,078 + MPMX19_03664 0.74 +0.4
1,103,078 + MPMX19_03664 0.74 -0.3
1,103,079 - MPMX19_03664 0.74 -0.8
1,103,079 - MPMX19_03664 0.74 +0.9
1,103,079 - MPMX19_03664 0.74 -0.6
1,103,079 - MPMX19_03664 0.74 +0.4
1,103,079 - MPMX19_03664 0.74 -0.5
1,103,079 - MPMX19_03664 0.74 +0.2
1,103,153 + MPMX19_03664 0.81 +1.1
1,103,154 - MPMX19_03664 0.81 -1.4
1,103,154 - MPMX19_03664 0.81 -0.9
1,103,268 + -0.3
1,103,269 - +0.2
1,103,279 + -1.2
1,103,389 + +1.4
1,103,389 + +0.4
1,103,390 - +0.7
1,103,390 - +0.2
1,103,390 - +0.4
1,103,390 - -1.3
1,103,390 - +0.8
1,103,390 - -1.9
1,103,470 + MPMX19_03665 0.11 -0.2
1,103,470 + MPMX19_03665 0.11 -0.2
1,103,470 + MPMX19_03665 0.11 -2.0
1,103,470 + MPMX19_03665 0.11 -0.9
1,103,470 + MPMX19_03665 0.11 +0.0
1,103,470 + MPMX19_03665 0.11 +0.4
1,103,470 + MPMX19_03665 0.11 +0.1
1,103,470 + MPMX19_03665 0.11 +0.9
1,103,470 + MPMX19_03665 0.11 -1.4
1,103,470 + MPMX19_03665 0.11 -0.2
1,103,470 + MPMX19_03665 0.11 -0.7
1,103,470 + MPMX19_03665 0.11 -0.4
1,103,471 - MPMX19_03665 0.11 -0.8
1,103,471 - MPMX19_03665 0.11 +0.4
1,103,471 - MPMX19_03665 0.11 -0.2
1,103,471 - MPMX19_03665 0.11 -1.1
1,103,471 - MPMX19_03665 0.11 +0.6
1,103,471 - MPMX19_03665 0.11 -1.0
1,103,471 - MPMX19_03665 0.11 -0.6
1,103,471 - MPMX19_03665 0.11 +0.5
1,103,471 - MPMX19_03665 0.11 -1.3
1,103,471 - MPMX19_03665 0.11 -0.2
1,103,471 - MPMX19_03665 0.11 +0.2
1,103,471 - MPMX19_03665 0.11 -0.8
1,103,613 + MPMX19_03665 0.29 -1.0
1,103,741 - MPMX19_03665 0.44 -1.3
1,103,872 + MPMX19_03665 0.61 +0.6
1,103,872 + MPMX19_03665 0.61 -0.9
1,103,872 + MPMX19_03665 0.61 -0.4
1,103,872 + MPMX19_03665 0.61 -0.1
1,103,872 + MPMX19_03665 0.61 +1.9
1,103,872 + MPMX19_03665 0.61 -0.2
1,103,872 + MPMX19_03665 0.61 -0.3
1,103,873 - MPMX19_03665 0.61 -1.0
1,103,873 - MPMX19_03665 0.61 -0.8
1,103,913 + MPMX19_03665 0.66 +0.2
1,104,360 + MPMX19_03666 0.39 +0.4
1,104,360 + MPMX19_03666 0.39 -1.3
1,104,360 + MPMX19_03666 0.39 -0.9

Or see this region's nucleotide sequence