Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03633

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03632 and MPMX19_03633 are separated by 193 nucleotidesMPMX19_03633 and MPMX19_03634 are separated by 19 nucleotides MPMX19_03632: MPMX19_03632 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 1,067,278 to 1,068,882 _03632 MPMX19_03633: MPMX19_03633 - Ornithine cyclodeaminase, at 1,069,076 to 1,070,140 _03633 MPMX19_03634: MPMX19_03634 - Arginase, at 1,070,160 to 1,071,110 _03634 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1068.262 kb on + strand, within MPMX19_03632at 1068.262 kb on + strand, within MPMX19_03632at 1068.262 kb on + strand, within MPMX19_03632at 1068.262 kb on + strand, within MPMX19_03632at 1068.262 kb on + strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.263 kb on - strand, within MPMX19_03632at 1068.308 kb on - strand, within MPMX19_03632at 1068.643 kb on + strand, within MPMX19_03632at 1068.644 kb on - strand, within MPMX19_03632at 1068.644 kb on - strand, within MPMX19_03632at 1068.644 kb on - strand, within MPMX19_03632at 1068.644 kb on - strand, within MPMX19_03632at 1068.881 kb on - strandat 1068.932 kb on - strandat 1069.209 kb on + strand, within MPMX19_03633at 1069.209 kb on + strand, within MPMX19_03633at 1069.209 kb on + strand, within MPMX19_03633at 1069.210 kb on - strand, within MPMX19_03633at 1069.210 kb on - strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.506 kb on + strand, within MPMX19_03633at 1069.507 kb on - strand, within MPMX19_03633at 1069.507 kb on - strand, within MPMX19_03633at 1069.507 kb on - strand, within MPMX19_03633at 1069.645 kb on - strand, within MPMX19_03633at 1069.645 kb on - strand, within MPMX19_03633at 1069.645 kb on - strand, within MPMX19_03633at 1069.830 kb on + strand, within MPMX19_03633at 1069.914 kb on + strand, within MPMX19_03633at 1069.914 kb on + strand, within MPMX19_03633at 1069.915 kb on - strand, within MPMX19_03633at 1069.926 kb on + strand, within MPMX19_03633at 1069.926 kb on + strand, within MPMX19_03633at 1069.927 kb on - strand, within MPMX19_03633at 1069.927 kb on - strand, within MPMX19_03633at 1070.038 kb on - strandat 1070.038 kb on - strandat 1070.038 kb on - strandat 1070.179 kb on + strandat 1070.180 kb on - strandat 1070.614 kb on + strand, within MPMX19_03634at 1070.614 kb on + strand, within MPMX19_03634at 1070.615 kb on - strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.644 kb on + strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.645 kb on - strand, within MPMX19_03634at 1070.845 kb on + strand, within MPMX19_03634at 1070.846 kb on - strand, within MPMX19_03634at 1070.846 kb on - strand, within MPMX19_03634at 1071.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,068,262 + MPMX19_03632 0.61 -0.4
1,068,262 + MPMX19_03632 0.61 +1.2
1,068,262 + MPMX19_03632 0.61 -1.0
1,068,262 + MPMX19_03632 0.61 +0.2
1,068,262 + MPMX19_03632 0.61 -0.1
1,068,263 - MPMX19_03632 0.61 -1.2
1,068,263 - MPMX19_03632 0.61 -0.6
1,068,263 - MPMX19_03632 0.61 +0.0
1,068,263 - MPMX19_03632 0.61 -1.1
1,068,263 - MPMX19_03632 0.61 -0.8
1,068,263 - MPMX19_03632 0.61 +0.8
1,068,263 - MPMX19_03632 0.61 -1.7
1,068,263 - MPMX19_03632 0.61 -0.8
1,068,263 - MPMX19_03632 0.61 -0.3
1,068,263 - MPMX19_03632 0.61 -0.4
1,068,263 - MPMX19_03632 0.61 -1.8
1,068,308 - MPMX19_03632 0.64 -2.0
1,068,643 + MPMX19_03632 0.85 -0.6
1,068,644 - MPMX19_03632 0.85 -0.2
1,068,644 - MPMX19_03632 0.85 -1.8
1,068,644 - MPMX19_03632 0.85 -1.5
1,068,644 - MPMX19_03632 0.85 -2.2
1,068,881 - -0.5
1,068,932 - +0.2
1,069,209 + MPMX19_03633 0.12 +0.2
1,069,209 + MPMX19_03633 0.12 +0.8
1,069,209 + MPMX19_03633 0.12 +1.8
1,069,210 - MPMX19_03633 0.13 -1.0
1,069,210 - MPMX19_03633 0.13 -0.8
1,069,506 + MPMX19_03633 0.40 +0.9
1,069,506 + MPMX19_03633 0.40 +0.2
1,069,506 + MPMX19_03633 0.40 +0.3
1,069,506 + MPMX19_03633 0.40 +0.8
1,069,506 + MPMX19_03633 0.40 +1.8
1,069,506 + MPMX19_03633 0.40 +0.6
1,069,506 + MPMX19_03633 0.40 -1.0
1,069,507 - MPMX19_03633 0.40 -1.0
1,069,507 - MPMX19_03633 0.40 +0.4
1,069,507 - MPMX19_03633 0.40 -0.1
1,069,645 - MPMX19_03633 0.53 -1.3
1,069,645 - MPMX19_03633 0.53 +0.0
1,069,645 - MPMX19_03633 0.53 -1.6
1,069,830 + MPMX19_03633 0.71 -0.1
1,069,914 + MPMX19_03633 0.79 -0.8
1,069,914 + MPMX19_03633 0.79 -1.3
1,069,915 - MPMX19_03633 0.79 -0.2
1,069,926 + MPMX19_03633 0.80 -0.3
1,069,926 + MPMX19_03633 0.80 -0.0
1,069,927 - MPMX19_03633 0.80 -1.0
1,069,927 - MPMX19_03633 0.80 -0.8
1,070,038 - -0.2
1,070,038 - +0.8
1,070,038 - -1.4
1,070,179 + -0.3
1,070,180 - -0.5
1,070,614 + MPMX19_03634 0.48 +1.4
1,070,614 + MPMX19_03634 0.48 +0.9
1,070,615 - MPMX19_03634 0.48 +2.4
1,070,644 + MPMX19_03634 0.51 -0.8
1,070,644 + MPMX19_03634 0.51 -1.9
1,070,644 + MPMX19_03634 0.51 -0.6
1,070,644 + MPMX19_03634 0.51 +0.4
1,070,644 + MPMX19_03634 0.51 -1.5
1,070,645 - MPMX19_03634 0.51 -0.8
1,070,645 - MPMX19_03634 0.51 -1.2
1,070,645 - MPMX19_03634 0.51 -1.2
1,070,645 - MPMX19_03634 0.51 +0.6
1,070,645 - MPMX19_03634 0.51 +3.4
1,070,645 - MPMX19_03634 0.51 -0.2
1,070,645 - MPMX19_03634 0.51 +0.4
1,070,845 + MPMX19_03634 0.72 +0.0
1,070,846 - MPMX19_03634 0.72 -1.1
1,070,846 - MPMX19_03634 0.72 -0.3
1,071,104 - +0.0

Or see this region's nucleotide sequence